Digital Commons Network^™

What Drives Gut Microbial Diversity And Community Structure Among Closely-Related Host Species?, Rylee Jensen

All NMU Master's Theses

The gut microbiome (GMB) of mammals hosts an important community of microbes that perform countless micro-ecosystem services for the host and are influenced by numerous factors including host physiology, environment, and phylogeny. Phylogeny may have a unique effect on GMB diversity and community structure (i.e., a GMB profile) via phylosymbiosis, a theory in which the evolution of hosts matches the evolution of their associated microbiota. Elucidating phylosymbiosis in mammals is difficult because multiple intrinsic and extrinsic factors collectively drive individual GMB variation. Thus, there is a need to simultaneously analyze the role of physiology, environment, and phylogeny on shaping host …

Unlocking Potential: Analyzing The Content, Style, Structure, And Interactivity Of Mesonets As Operational Dashboards, Savannah Olivas, Jeannette Sutton, Michele K. Olson

Emergency Preparedness, Homeland Security, and Cybersecurity Faculty Scholarship

Emergency managers need data and information to make life-saving decisions on behalf of the public. Operational dashboards, if designed appropriately, can provide this information in a central location and reduce cognitive demands during decision-making. Mesonet websites can serve as a type of operational dashboard that has the potential to provide the meteorological data necessary for emergency managers to make decisions. In this study, we use quantitative content analysis to examine the content, style, structure, and interactivity of 18 Mesonet websites from across the contiguous United States. We find that Mesonet websites vary in the type and amount of content they …

Pdgf-Bb Overexpression In P53 Null Oligodendrocyte Progenitors Increases H3k27me3 And Induces Transcriptional Changes Which Favor Proliferation, Dennis Huang, Angeliki Mela, Natarajan V Bhanu, Benjamin A Garcia, Peter Canoll, Patrizia Casaccia

2020-Current year OA Pubs

Proneural gliomas are brain tumors characterized by enrichment of oligodendrocyte progenitor cell (OPC) transcripts and genetic alterations. In this study we sought to identify transcriptional and epigenetic differences between OPCs with Trp53 deletion and PDGF-BB overexpression (BB-p53n) and those carrying only p53 deletion (p53n). In culture, the BB-p53n OPCs display growth characteristics more similar to glioma cells than p53n OPCs. When injected in mouse brains, BB-p53n OPC form tumors, while the p53n OPCs do not. Unbiased histone proteomics and transcriptomic analysis on these OPC populations identified higher levels of the histone H3K27me3 mark and lower levels of the histone H4K20me3. …

Extrapolative Validity Evidence Of The Anastomosis Objective Structured Assessment Of Technical Skill (A-Osats) For Robotic Ileocolic Anastomosis, Tiffany K Brocke, Cory Fox, Julie M Clanahan, Coen L Klos, William C Chapman Jr, Paul E Wise, Michael M Awad, Kerri A Ohman

2020-Current year OA Pubs

OBJECTIVE: To collect validity evidence for the use of the Anastomosis Objective Structured Assessment of Technical Skills (A-OSATS) instrument, which has been developed to evaluate performance of a minimally invasive side-to-side bowel anastomosis with hand-sewn common enterotomy.

DESIGN: Residents performed a robotic ileocolic anastomosis simulation on an ex vivo porcine model. Faculty scored each resident with the A-OSATS and performed a provocative leak test on the completed anastomoses. Residents were reassessed on the sewing sub-score 1 month later. Data were compared with parametric and nonparametric analysis.

SETTING: Single academic general surgery residency PARTICIPANTS: PGY-4 and -5 general surgery residents (n …

Pollination By Birds, Non-Flying Mammals, And European Honeybees In A Heathland Shrub, Banksia Catoglypta (Proteaceae), Stanislaw K. Wawrzyczek, Robert A. Davis, Siegfried L. Krauss, Susan E. Hoebee, Louis M. Ashton, Ryan D. Phillips

Research outputs 2022 to 2026

Vertebrate pollination has evolved in many plant lineages, with pollination by birds the most prevalent strategy. However, in Banksia (Proteaceae) many species are visited by a combination of nectarivorous birds, non-flying mammals (NFMs), and insects, though the relative importance of these pollen vectors for reproduction remains poorly understood. Here, we investigate the contribution to fruit set of birds, NFMs, and insects in Banksia catoglypta—a heathland shrub from south-west Australia. This species flowers in winter and produces large, golden-yellow inflorescences that are typically presented near the ground and consist of rigid, strongly scented flowers with a long stigma-nectary distance—suggesting pollination by …

A Cross-Systems Primer For Synthetic Microbial Communities, Elijah C Mehlferber, Gontran Arnault, Bishnu Joshi, Laila P Partida-Martinez, Kathryn A Patras, Marie Simonin, Britt Koskella

Faculty, Staff and Students Publications

The design and use of synthetic communities, or SynComs, is one of the most promising strategies for disentangling the complex interactions within microbial communities, and between these communities and their hosts. Compared to natural communities, these simplified consortia provide the opportunity to study ecological interactions at tractable scales, as well as facilitating reproducibility and fostering interdisciplinary science. However, the effective implementation of the SynCom approach requires several important considerations regarding the development and application of these model systems. There are also emerging ethical considerations when both designing and deploying SynComs in clinical, agricultural or environmental settings. Here we outline current …

Quantitative Label-Free Digital Holographic Imaging Of Cardiomyocyte Optical Volume, Nucleation, And Cell Division, Herman Huang, Sangsoon Park, Ines Ross, Joseph Moreno, Sheamin Khyeam, Jacquelyn Simmons, Guo N. Huang, Alexander Y. Payumo

Faculty Research, Scholarly, and Creative Activity

Cardiac regeneration in newborn rodents depends on the ability of pre-existing cardiomyocytes to proliferate and divide. This capacity is lost within the first week of postnatal development when these cells rapidly switch from hyperplasia to hypertrophy, withdraw from the cell cycle, become binucleated, and increase in size. How these dynamic changes in cell size and nucleation impact cardiomyocyte proliferative potential is not well understood. In this study, we innovate the application of a commercially available digital holographic imaging microscope, the Holomonitor M4, to evaluate the proliferative responses of mononucleated and binucleated cardiomyocytes after CHIR99021 treatment, a model proliferative stimulus. This …

Taxation’S Limits, Luís C. Calderón Gómez

Articles

Countless pages have been devoted to the question of why everyone should pay tax, yet its opposite has gone largely unnoticed: why should some people and organizations not pay tax? Our tax system exempts from ordinary income taxation a wide and diverse array of people and organizations engaged in significant economic activity—from parents providing childcare services for their family to consular activities and charities operating animal shelters—seemingly without a convincing explanation. Perhaps because of the dizzying diversity of tax-exempt activities, scholars and policymakers have avoided comprehensively or coherently justifying our exemption regimes.

This Article develops a novel normative theory that …

Collectively Advancing Deep Learning For Animal Detection In Drone Imagery: Successes, Challenges, And Research Gaps, Daniel Axford, Ferdous Sohel, Mathew A. Vanderklift, Amanda J. Hodgson

Research outputs 2022 to 2026

Drones have emerged as a powerful tool in animal detection, significantly advancing wildlife monitoring, conservation, and management by capturing high-resolution, real-time imagery over areas often inaccessible or challenging for human observers to reach. However, manual analysis of drone imagery for animal detection is labour-intensive and time-consuming. The application of deep learning methods, particularly convolutional neural networks, in automating animal detection from drone imagery has the potential to revolutionise wildlife monitoring, conservation, and management protocols. This review provides a comprehensive overview of the increasing use and prospects of deep learning in animal detection using drone imagery. It explores successful applications of …

An Exploratory Vector Field Analysis Of Ground Reaction Force During Maximum Sprinting Efforts In Male Soccer Players And Sprinters, Daniel Kadlec, Steffi Colyer, Ryu Nagahara, Sophia Nimphius

Research outputs 2022 to 2026

The ability to accelerate and attain high velocities is essential for both individual and team sport athletes. The purpose of this explorative study was to retrospectively analyze the ground reaction force using Statistical Parametric Mapping (SPM) vector field analysis, as traditional scalar analyses often fail to acknowledge the interdependence of force vector components. The ground reaction force vector and the scalar components (i.e., vertical and horizontal force) were analyzed for 28 male sprinters and 24 male soccer players at 8.0 and 8.5 m·s−1, and between 85%, 90%, 95%, and 100% of their maximum velocity. The ground reaction force vector differed …

Evaluation Of Alkaloid Levels In Commercial And Wild Genotypes Of Narrow-Leafed Lupin, Tawfeek Khedr, Ling Ling Gao, Lars G. Kamphuis, Utpal Bose, Angéla Juhász, Michelle L. Colgrave

Research outputs 2022 to 2026

Lupins are a promising source of protein that can complement soybean-based proteins in food and animal feed. Narrow-leafed lupin (Lupinus angustifolius) is the predominant lupin species cultivated in Australia and Europe. Consumption of lupin products can lead to toxicity in both humans and animals, primarily due to the presence of naturally occurring alkaloid compounds. The aim of the present research was to examine the alkaloid content of commercial narrow-leafed lupin grown in Australia and compare this to wild accessions. Nineteen accessions of narrow-leafed lupin were grown in a growth chamber with a day/night cycle of 18 h of light and …

Bcl-Xl Is Translocated To The Nucleus Via Ctbp2 To Epigenetically Promote Metastasis, Tiantian Zhang, Sha Li, Yingcai Adrian Tan, Xiang Chen, Cheryl Zhang, Zhengming Chen, Bikash Mishra, Joseph Hyungjoon Na, Soyoung Choi, Sandra J Shin, Priyadarshan Damle, Kranthi Kumar Chougoni, Steven R Grossman, Dunrui Wang, Xuejun Jiang, Yi Li, Erika Hissong, Yao-Tseng Chen, Jenny Z Xiang, Yi-Chieh Nancy Du

Faculty, Staff and Students Publications

Nuclear Bcl-xL is found to promote cancer metastasis independently of its mitochondria-based anti-apoptotic activity. How Bcl-xL is translocated into the nucleus and how nuclear Bcl-xL regulates histone H3 trimethyl Lys4 (H3K4me3) modification have yet to be understood. Here, we report that C-terminal Binding Protein 2 (CtBP2) binds to Bcl-xL via its N-terminus and translocates Bcl-xL into the nucleus. Knockdown of CtBP2 by shRNA decreases the nuclear portion of Bcl-xL and reverses Bcl-xL-induced invasion and metastasis in mouse models. Furthermore, knockout of CtBP2 not only reduces the nuclear portion of Bcl-xL but also suppresses Bcl-xL transcription. The binding between Bcl-xL and …

An Ancient Ecospecies Of Helicobacter Pylori, Elise Tourrette, Roberto C Torres, Sarah L Svensson, Takashi Matsumoto, Muhammad Miftahussurur, Kartika Afrida Fauzia, Ricky Indra Alfaray, Ratha-Korn Vilaichone, Vo Phuoc Tuan, Helicobacter Genomics Consortium, Difei Wang, Abbas Yadegar, Lisa M Olsson, Zhemin Zhou, Yoshio Yamaoka, Kaisa Thorell, Daniel Falush

Faculty, Staff and Students Publications

Helicobacter pylori disturbs the stomach lining during long-term colonization of its human host, with sequelae including ulcers and gastric cancer1,2. Numerous H. pylori virulence factors have been identified, showing extensive geographic variation1. Here we identify a ‘Hardy’ ecospecies of H. pylori that shares the ancestry of ‘Ubiquitous’ H. pylori from the same region in most of the genome but has nearly fixed single-nucleotide polymorphism differences in 100 genes, many of which encode outer membrane proteins and host interaction factors. Most Hardy strains have a second urease, which uses iron as a cofactor rather than …

Ai-Powered Pedagogy: Revolutionizing Students’ Learning Experiences Through Integration Of Ai Technologies, Amna Awad Alsaedi

Theses

This research examines the integration of Artificial Intelligence (AI) within the educational sector with the aim of enhancing student learning outcomes. AI offers tailored learning experiences, interactive educational content, prompt feedback, and access to diverse learning resources. Nonetheless, challenges including addiction, costliness, privacy infringement, bias, ethical dilemmas, market competition, and moral considerations require resolution. Research particularly delves into the utilization of chatbots, and algorithms designed to simulate human interactions and generate text resembling human speech. Educational applications powered by AI have the potential to heighten student engagement, comprehension, and academic performance by substituting traditional assignments with concise, information-rich lessons. Furthermore, …

The Effect Of Nerolidol On The Renal Dysfunction Following Bilateral Ureteral Obstruction In The Rat, Harun Rashed Toumi

Theses

This thesis addressed nerolidol’s potential therapeutic and protective effects on bilateral ureteral obstruction-induced uropathy in rats. Obstructive uropathy stands as a notable contributor to acute kidney injury (AKI), accounting for 5-10% of all AKI cases worldwide, with a particularly high prevalence among the elderly, constituting 22% of AKI cases in this age group. Urinary tract obstruction, often attributed to factors such as kidney stones, urinary tract deformities and benign/malignant growths such as benign prostatic hyperplasia (BPH) in older men can lead to detrimental outcomes if left untreated, potentially progressing to kidney failure and even mortality. The severity of the kidney …

Practices And Perceptions Of Uae Residents: Food Safety In Handling And Preparation Of Fish, Consumption, And Nutrition From Fish, Noof Ahmad Al Marzooqi

Theses

Background: UAE is uniquely located with an extensive seafront, which has led to the development of fishing and fisheries in the country. As a result, the UAE's diverse population has become one of the highest fish consumers among the Gulf countries. The high fish consumption in the UAE was a part of the traditional diet; however, a better understanding of UAE residents' practices and perceptions of fish food safety, fish preparation, and nutrition from fish consumption was needed. Objective: This study investigates food safety practices in handling and preparation of fish, consumption trends, and perceptions of nutrition from fish among …

Predicting The Current Habitat Distribution Of Important Halophytes And Their Potential Future Shifts Under Climate Change Using Species Distribution Modeling, Ahlam Mabkhot Bin Suwaidan

Theses

This thesis is concerned with the current habitat distribution of important 15 halophyte species and the impact climate change on their distribution, probability of occurrence and presence for two future temporal points (2050, 2070). The main objective of this thesis is to define the current distribution of important halophytes and to assess the impacts of climate change on their distribution using future climate projections CMIP5 RCP 8.5. This study utilizes multidimensional available data to address the current and to predict the future distribution of Halophyte plant species. To perform this study, the object-oriented and reproducible R package known as SDM, …

Evaluating The Feasibility And Efficacy Of 3d Printing Versus Traditional Construction Techniques: A Study Of Cost, Time And Energy Of A New Lowrise Office Building On The Uaeu Campus, Hala Mohammed Basel

Theses

In line with the forward-looking vision of the United Arab Emirates University (UAEU), this research evaluates the feasibility and effectiveness of 3D printing technology compared to traditional construction methods, focusing on cost, time, and energy efficiency for a new low-rise office building on the UAEU campus. With the growing number of PhD students in the Architectural Engineering Department, expanding office space has become a priority. This study explores how 3D printing technology, known for its sustainability, reduced material waste, and accelerated construction, can address these challenges more efficiently than conventional methods.

Guided by the UAE Vision 2030, which focuses on …

Evaluation Of Opportunities For The Cultivation Of Heterotrophic Plant Root Organ Cultures As Food: Optimization Of Culture Conditions And Carbohydrate Sources, Fatima Mohammed Alkaabi

Theses

All agricultural plant production requires investment of water, energy, and land, especially in the Gulf Region, where environmental conditions are not ideally suitable for crop farming. Currently, less than 40% of agricultural plant biomass production constitutes food, which greatly limits the overall feasibility of food production systems worldwide. Crop residues constitute over half of global agricultural biomass, and food waste and biomass from public parks and gardens further add to the vast pool of non-edible plant material. Existing valorization strategies for such material cannot compensate for the enormous amounts of water, energy, land, and human resources invested in their production. …

Determining The Impact Of Lethal Temperature And Relative Humidity When Combined With Various Insecticide Classes Against A Bed Bug (Cimex Lectularius) Population., Bandana Shrestha

LSU Master's Theses

Common bed bugs (Cimex lectularius) are obligatory blood-feeding pests that have adapted well to survive in challenging environmental conditions. Known for their high tolerance to dehydration, low water loss, and high critical thermal maximum, they have become difficult to manage. Environmental factors, particularly temperature and humidity, play a significant role in their survival. However, with growing resistance to insecticides, integrated pest management (IPM) strategies are now essential for effective bed bug control. A key strategy in IPM involves combining insecticides with heat treatments. This method aims to overcome the limitations of heat treatment alone, as bed bugs may …

Multiple Negative Impacts Of Marine Plastic Pollution On Tropical Coastal Ecosystem Services, And Human Health And Well-Being, Carya Maharja, Radisti A. Praptiwi, Sainal Sainal, Prawesti Wulandari, Matthew Ashley, Kayleigh Wyles, Joyashree Roy, I Gede Hendrawan, Susan Jobling, Melanie Austen

School of Psychology

There is limited empirical evidence showing the impacts of marine plastic pollution on ecosystem services or on human health and well-being in Global South countries. We aimed to estimate these impacts in the tropical archipelago of Indonesia, one of the top emitters of marine plastics globally, through an iterative Delphi survey, with an expert panel (n = 42) consisting of equal numbers of Indonesian scientists, policymakers, and practitioners. After two rounds of the survey, the analysis of interquartile ranges indicated that the experts reached a consensus in their predictions. The experts agreed that, over the next 10 years, plastics would …

Reportable Animal Diseases – Western Australia, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity factsheets

In Western Australia, the Biosecurity and Agriculture Management Act 2007 requires that certain diseases must be reported if they are known or suspected to be present.

This table shows which diseases must be reported.

Yellow Crazy Ant, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity factsheets

Yellow crazy ants (Anoplolepis gracilipes) are believed to be native to west Africa or Asia. They are not present in Western Australia (WA) and are prohibited.

Yellow crazy ants were first observed in Australia in the early 1900’s on the Cocos-Keeling Islands and Christmas Island, where they have now caused a massive decline in the population of iconic red crabs. More recently, they have been recorded in Queensland, the Northern Territory (NT), and New South Wales (NSW).

European Wasp Baiting Trial 2020, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity factsheets

A Western Australian-first baiting program implemented by the department to eradicate European wasps from a 9 km stretch of rugged and largely inaccessible bushland of the Darling Scarp yielded promising results.

Pest Bird Control: Bait / Toxin Products, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity factsheets

This factsheet provides information on the bait, poison and toxin (bait) products available for use in Western Australia (WA) to control pest birds.

Mesquite And Its Control: Prosopis Species And Hybrids, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity factsheets

Mesquite (all Prosopis species and hybrids) are declared pests in Western Australia (WA). This factsheet describes the nature of the plant with links to requirements landowners/occupiers must adhere to and pest control methods.

Rubber Vine And Its Control, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity factsheets

Rubber vine, Palay rubbervine, India rubbervine (Cryptostegia grandiflora) is a declared pest in Western Australia (WA). Rubber vine chokes river catchment areas and is highly toxic to livestock.

Rabbit Control: Warren And Harbourage Destruction, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity factsheets

If correctly and appropriately undertaken, the destruction of rabbit warrens, or modification of the habitat so it becomes less favourable to rabbits, can be an important and effective part of reducing the impacts of rabbits.

Destruction of warrens can improve the overall effectiveness of rabbit control programs, even though many rabbits live and shelter above-ground under bushes, and in scrub). If undertaken properly, the ripping of rabbit warrens can often provide a relatively permanent and long-term benefit. Similarly, removing or modifying other forms of rabbit-harbourage (for example, removing rock piles) can help, particularly in semi-urban areas or on smallholdings.

Rabbit Control In Urban And Semi-Urban Areas, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity factsheets

This factsheet provides information on control options for rabbits in urban and semi-urban areas in Western Australia (WA).

Rabbits cause considerable losses to agricultural and horticultural industries. They can cause serious environmental problems, such as soil erosion and degradation of native vegetation. Rabbits also compete with native fauna for food and habitat.

Rabbits may be a problem or a nuisance in urban environments where they can damage lawns and gardens, buildings, garages, and sheds. Rabbits can also damage golf courses, sports grounds, and parkland reserves.

The options for control of rabbits in urban areas are more limited than in rural …

Electric Ant (Little Fire Ant), Department Of Primary Industries And Regional Development, Western Australia

Biosecurity factsheets

The electric ant (Wasmannia auropunctata), also known as little fire ant, is a tiny, gold-brown coloured ant, and one of the world's most invasive pests. Electric ants prey on and compete with other insects and can displace large numbers of native animals, ants, and other insects.

They affect human health and lifestyle, can inflict painful stings on humans and wild and domestic animals, can blind pets, damage the environment, and have the potential to severely affect agricultural industries.

The electric ant is native to Central and South America and was first detected in Australia in 2006 in Queensland, where there …