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Utilizing Machine Learning Techniques For Computer-Aided Covid-19 Screening Based On Clinical Data, Honglun Xu, Andrews T. Anum, Michael Pokojovy, Sreenath Chalil Madathil, Yuxin Wen, Md. Fashiar Rahman, Tzu-Liang Bill Tseng, Scott Moen, Eric Walser Jan 2026

Utilizing Machine Learning Techniques For Computer-Aided Covid-19 Screening Based On Clinical Data, Honglun Xu, Andrews T. Anum, Michael Pokojovy, Sreenath Chalil Madathil, Yuxin Wen, Md. Fashiar Rahman, Tzu-Liang Bill Tseng, Scott Moen, Eric Walser

Engineering Faculty Articles and Research

The COVID-19 pandemic has highlighted the importance of rapid clinical decision-making to facilitate the efficient usage of healthcare resources. Over the past decade, machine learning (ML) has caused a tectonic shift in healthcare, empowering data-driven prediction and decision-making. Recent research demonstrates how ML was used to respond to the COVID-19 pandemic. This paper puts forth new computer-aided COVID-19 disease screening techniques using six classes of ML algorithms (including penalized logistic regression, random forest, artificial neural networks, and support vector machines) and evaluates their performance when applied to a real-world clinical dataset containing patients’ demographic information and vital indices (such as …


A Contextual Attention-Based Transformer Model For Enhanced Hate Speech Detection On Twitter, Mira Mansour, Nancy Akoum, Seifedine Kadry Jan 2026

A Contextual Attention-Based Transformer Model For Enhanced Hate Speech Detection On Twitter, Mira Mansour, Nancy Akoum, Seifedine Kadry

Iraqi Journal for Computer Science and Mathematics

Hate speech on social media poses significant societal challenges, necessitating accurate and context-sensitive automated detection. Traditional machine learning (ML) models typically rely on lexical or superficial features, limiting their ability to capture nuanced or contextually ambiguous expressions of hate speech. Recent transformer-based methods (e.g., RoBERTa) provide improved contextual understanding but often lack explicit mechanisms guiding the model’s attention to critical semantic tokens, thereby reducing interpretability and sensitivity to nuanced linguistic contexts. This paper introduces a novel contextual attention-guided transformer model that explicitly incorporates lexicon-guided attention supervision into RoBERTa fine-tuning, significantly enhancing semantic precision in hate speech detection on Twitter. Evaluations …


Numerical And Machine Learning Based Recreation Of Damage Morphologies Of Barely Visible Impact Damage, Oscar A. Valdez Jan 2026

Numerical And Machine Learning Based Recreation Of Damage Morphologies Of Barely Visible Impact Damage, Oscar A. Valdez

Mechanical and Aerospace Engineering Dissertations

Composite laminates are highly sought after in the aerospace industry as they provide strength without dramatically increasing the weight of manufactured structures. However, composite laminates are susceptible to barely visible impact damage caused by routine activities. This type of damage can easily go unnoticed while significantly reducing the load-carrying capability of the laminate. Current non-destructive evaluation techniques, such as ultrasonic scanning, can reveal the damage footprint but provide no insight into delamination through-the-thickness due to the shadowing effect. Micro-computed tomography offers ply-by-ply damage resolution but is unsuitable for field inspections and is constrained by specimen size. This study aims to …


Deep Learning Framework For Sow Posture Classification From Depth Images: Comparison With Data Transformation Techniques, Models, And Cross-Validation, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Suzanne M. Leonard, Yeyin Shi Jan 2026

Deep Learning Framework For Sow Posture Classification From Depth Images: Comparison With Data Transformation Techniques, Models, And Cross-Validation, Md Towfiqur Rahman, Tami M. Brown-Brandl, Gary A. Rohrer, Sudhendu R. Sharma, Suzanne M. Leonard, Yeyin Shi

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Piglet preweaning mortality (PWM) in the United States averages ≈14–15%, with sow overlaying causing about one third proportion of these losses. This research aimed to develop and evaluate deep learning models to classify six sow postures using depth images to monitor behaviors linked to overlaying risk. Top-down depth images were captured with Kinect V2® cameras at 10 frames min-1 for five consecutive days (2 days before to 2 days after farrowing), yielding 26,506 training images from 18 sows, 17,901 testing images from 12 sows, and 4,697 additional images from three sows in diagonal stalls for external validation. Three …


Utilizing Machine Learning Techniques For Computer-Aided Covid-19 Screening Based On Clinical Data, Honglun Xu, Andrews T. Anum, Michael Pokojovy, Sreenath Chalil Madathil, Yuxin Wen, Md Fashiar Rahman, Tzu-Liang (Bill) Tseng, Scott Moen, Eric Walser Jan 2026

Utilizing Machine Learning Techniques For Computer-Aided Covid-19 Screening Based On Clinical Data, Honglun Xu, Andrews T. Anum, Michael Pokojovy, Sreenath Chalil Madathil, Yuxin Wen, Md Fashiar Rahman, Tzu-Liang (Bill) Tseng, Scott Moen, Eric Walser

Mathematics & Statistics Faculty Publications

The COVID-19 pandemic has highlighted the importance of rapid clinical decision-making to facilitate the efficient usage of healthcare resources. Over the past decade, machine learning (ML) has caused a tectonic shift in healthcare, empowering data-driven prediction and decision-making. Recent research demonstrates how ML was used to respond to the COVID-19 pandemic. This paper puts forth new computer-aided COVID-19 disease screening techniques using six classes of ML algorithms (including penalized logistic regression, random forest, artificial neural networks, and support vector machines) and evaluates their performance when applied to a real-world clinical dataset containing patients’ demographic information and vital indices (such as …


Ai For Life Sciences: From Geometric Protein Modeling To Multimodal Drug Design, Feng Jiang Jan 2026

Ai For Life Sciences: From Geometric Protein Modeling To Multimodal Drug Design, Feng Jiang

Computer Science and Engineering Dissertations

Predicting biomolecular interactions, from immune recognition to drug–target binding, is a central problem in the life sciences and computational drug discovery. Deep learning has advanced this area, yet three challenges persist: the topology of large, highly imbalanced interaction networks; structural noise in computationally predicted protein models; and the integration of multimodal information such as functional text and taxonomic annotations. This dissertation develops a coherent set of models spanning immune complex prediction and small-molecule drug design: graph learning that addresses network topology and severe class imbalance; a noise-tolerant method that fuses predicted structures with evolutionary sequence features; and multimodal representation learning …


A Hybrid Response Surface Methodology And Machine Learning Framework For Quantifying Effects Of Physicochemical Parameters On Pfas Distribution, Harsh V. Patel, Jazmin Green, Hyoshin Park, Stephanie Luster-Teasley Pass, Renzun Zhao Jan 2026

A Hybrid Response Surface Methodology And Machine Learning Framework For Quantifying Effects Of Physicochemical Parameters On Pfas Distribution, Harsh V. Patel, Jazmin Green, Hyoshin Park, Stephanie Luster-Teasley Pass, Renzun Zhao

Engineering Management & Systems Engineering Faculty Publications

Predicting PFAS adsorption across diverse adsorbents and environmental matrices remains challenging because adsorbent physicochemical properties, PFAS molecular descriptors, and operational conditions simultaneously influence adsorption. This study develops and evaluates a unified hybrid modeling framework that integrates Response Surface Model (RSM) with machine-learning algorithms to quantify how six key variables, surface area, Log Kow, pHpzc, pKa, log dose, and log-initial concentration, affect PFAS distribution coefficients (Log Kd). A data set of more than 1000 adsorption observations spanning 15 PFAS compounds, multiple adsorbent types, and a broad operational range was compiled and preprocessed using …


Optimizing Machine Learning Algorithms Through Hyper-Parameter Tuning For Accurate Rice Yield Forecasting In North-East, Nigeria. International Journal Of Agricultural And Statistical Sciences, Ezra Daniel Dzarma, Guy Degla, Theophile Komlan Dagba, Nyor Ngutor Jan 2026

Optimizing Machine Learning Algorithms Through Hyper-Parameter Tuning For Accurate Rice Yield Forecasting In North-East, Nigeria. International Journal Of Agricultural And Statistical Sciences, Ezra Daniel Dzarma, Guy Degla, Theophile Komlan Dagba, Nyor Ngutor

All Rsif Scholars' Publications

Accurate prediction of rice yield is crucial for strengthening food security and improving agricultural decisionmaking in North-East Nigeria, where production systems are constrained by fluctuating input use and environmental variability. This study applies four machine learning algorithms: Random Forest (RF), Extreme Gradient Boosting (XGB), Support Vector Regression (SVR), and K-Nearest Neighbours (KNN)to model rice yield using five primary farm inputs: Labour (B), Fertilizer (F), Herbicides (H), Seeds (S), and land (L)area. All models were optimized through hyper-parameter tuning to ensure reliable performance. The results show that SVM and XGB produced the strongest predictive accuracy, with RF achieving an RMSE of …


Business Process Redesign For Reducing Undelivered Product Return Losses In E-Commerce – An Explainable Ai Approach, Venkataraghavan Krishnaswamy, Deepa R, Himanshu Sharma Jan 2026

Business Process Redesign For Reducing Undelivered Product Return Losses In E-Commerce – An Explainable Ai Approach, Venkataraghavan Krishnaswamy, Deepa R, Himanshu Sharma

Journal of International Technology and Information Management

Product returns in e-commerce affect the profitability of the e-tailer. We adopt a two-stage approach to reduce undelivered product returns in an e-commerce firm. First, we develop and compare machine learning techniques—logistic regression, decision trees, Naïve Bayes, random forest, adaptive boosting, gradient boosting, stochastic gradient boosting, and deep neural networks—on their ability to predict undelivered returns. Next, we use explainable methods, such as relative importance and Shapley values, to develop insights from the best-performing machine learning model. Finally, we use these insights and the predictive model to redesign the firm’s order fulfillment and return processes. A Post-implementation evaluation of the …


Serum Biomarker Trajectory Clusters Predict Functional Outcome And Quality Of Life For Traumatic Brain Injury, Thanh Son Do, Chantal Carnes, Zhihui Yang, Firas Kobeissy, Hamad Yadikar, Gayla R. Olbricht, Olli Tenovuo, Jussi P. Posti, Ewout W. Steyerberg, Lindsay Wilson, Nicole Von Steinbüchel, Endre Czeiter, Andras Buki, David K. Menon Jan 2026

Serum Biomarker Trajectory Clusters Predict Functional Outcome And Quality Of Life For Traumatic Brain Injury, Thanh Son Do, Chantal Carnes, Zhihui Yang, Firas Kobeissy, Hamad Yadikar, Gayla R. Olbricht, Olli Tenovuo, Jussi P. Posti, Ewout W. Steyerberg, Lindsay Wilson, Nicole Von Steinbüchel, Endre Czeiter, Andras Buki, David K. Menon

Mathematics and Statistics Faculty Research & Creative Works

Serum brain-enriched biomarkers are increasingly employed in the clinical evaluation of traumatic brain injury (TBI) to assist with triage, neuroimaging decisions, and prognostication. However, the potential of temporal biomarker trajectories to inform disease monitoring and long-term outcomes remains underexplored. We aim to identify distinct biomarker trajectory (TRAJ) profiles in traumatic brain injury patients and to examine their associations with long-term clinical outcomes. The study included 373, CT-positive Intensive Care Unit (ICU) traumatic brain injury patients (256 with initial Glasgow Coma Scale 3–12) from the Collaborative European Neurotrauma Effectiveness Research in TBI (CENTER-TBI) core study who had at least two serum …


Automated Object Detection And Change Quantification In Underground Mines Using Lidar Point Clouds And 360◦ Image Processing, Ana Fabiola Patricia Tejada Peralta, Roya Bakzadeh, Sina Siahidouzazar, Pedram Roghanchi Jan 2026

Automated Object Detection And Change Quantification In Underground Mines Using Lidar Point Clouds And 360◦ Image Processing, Ana Fabiola Patricia Tejada Peralta, Roya Bakzadeh, Sina Siahidouzazar, Pedram Roghanchi

Mining Engineering Faculty Publications

Underground mining environments pose significant challenges for automated hazard detection due to low illumination, restricted visibility, and the absence of Global Navigation Satellite System (GNSS) coverage. These factors limit situational awareness and delay inspection efforts, particularly after disruptive events when rapid assessment is essential for safety. This study addresses this problem by developing a dual-pipeline framework for 2D–3D detection that uses 360° imaging and LiDAR-based machine learning to identify people, vehicles, and positional changes in underground settings without requiring personnel to re-enter hazardous areas. The objective was to create a system capable of recognizing objects and monitoring spatial changes under …


Ordered Mini-Batch Training For Differentially Private And Encrypted Logistic Regression, Ryan Leone Jan 2026

Ordered Mini-Batch Training For Differentially Private And Encrypted Logistic Regression, Ryan Leone

Theses, Dissertations and Culminating Projects

Logistic regression has found extensive use as a supervised machine learning algorithm due to its simplicity and efficiency in binary and multivariate classification tasks. As data sharing grows across connected devices, safeguarding sensitive personal and industrial information is of increased importance. Privacy-preserving machine learning techniques such as differential privacy and homomorphic encryption offer mathematically rigorous security guarantees, but introduce difficult accuracy, privacy loss, and computational overhead issues. This thesis investigates PPML for logistic regression through a collaborative mini-batch training framework. I propose and implement an ordered mini-batch strategy, compare it to standard shuffled methods, then integrate differential privacy noise injection …


Student Retention In Music Programs: An Analysis Of Relationships Between Selected Student Demographics And Continued Enrollment In Music Programs With The Presence Of School-Provided Supports, Jessica Wiese Jan 2026

Student Retention In Music Programs: An Analysis Of Relationships Between Selected Student Demographics And Continued Enrollment In Music Programs With The Presence Of School-Provided Supports, Jessica Wiese

Theses, Dissertations and Capstones

Music education provides significant cognitive, social, and academic benefits; however, elective music programs often face substantial annual attrition. While existing literature has documented material barriers (e.g., instrument costs, transportation, scheduling conflicts), this study investigates the persistence of attrition within a medium-sized suburban district on Long Island that has systematically mitigated these obstacles. The district provides free instruments, flexible scheduling, and dedicated transportation for all students. The purpose of this mixed-methods study was to determine whether demographic disparities in music enrollment remain predictive of withdrawal in such a post-barrier environment.

The research used a two-phase explanatory sequential design. In the first …


Advances And Challenges In Digitally Connected Point-Of-Care Biosensing, Abdellatif Ait Lahcen, Jegan Rajendran, Gymama Slaughter Jan 2026

Advances And Challenges In Digitally Connected Point-Of-Care Biosensing, Abdellatif Ait Lahcen, Jegan Rajendran, Gymama Slaughter

Center for Bioelectronics Publications

Point-of-care (POC) biosensors are undergoing a paradigm shift from isolated diagnostic tools to digitally connected, intelligent platforms that enable continuous and decentralized healthcare delivery. This review critically examines recent advances in wearable, implantable, and portable biosensors, highlighting how integration with wireless communication, the Internet of Medical Things (IoMT), and artificial intelligence is transforming their functionality and clinical utility. Particular attention is given to innovations such as smartphone-enabled interfaces, cloud-based analytics, and machine learning-assisted analysis, which collectively enhance sensitivity, specificity, and user accessibility across diverse healthcare settings, from personalized home monitoring and bedside diagnostics to deployment in resource-limited regions. The review …


A Position Statement On Endovascular Models And Effectiveness Metrics For Mechanical Thrombectomy Navigation, On Behalf Of The Stakeholder Taskforce For Artificial Intelligence-Assisted Robotic Thrombectomy (Start), Harry Robertshaw, Anna Barnes, Phil Blakelock, Raphael Blanc, Robert Crossley, Rebecca Fahrig, Ameer E. Hassan, Benjamin Jackson, Lennart Karstensen Jan 2026

A Position Statement On Endovascular Models And Effectiveness Metrics For Mechanical Thrombectomy Navigation, On Behalf Of The Stakeholder Taskforce For Artificial Intelligence-Assisted Robotic Thrombectomy (Start), Harry Robertshaw, Anna Barnes, Phil Blakelock, Raphael Blanc, Robert Crossley, Rebecca Fahrig, Ameer E. Hassan, Benjamin Jackson, Lennart Karstensen

School of Medicine Publications

Although we are making progress in overcoming infectious diseases and cancer, one of the major medical challenges of the mid-21st century will be the increasing prevalence of stroke. Occlusions in large vessels are especially debilitating, yet effective treatment—needed within hours to achieve best outcomes—remains limited because of geographic accessibility. One solution for improving timely access to mechanical thrombectomy in geographically diverse populations is the widespread deployment of robotic surgical systems. Artificial intelligence assistance may enable the safe and effective upskilling of operators in this emerging therapeutic delivery approach. Our aim was to establish consensus frameworks for developing and validating artificial …


Data-Driven Climate Damage Functions For Capital Formation: Estimating The Climate Penalty Using Maching Learning, Pramudya Wicaksono Jan 2026

Data-Driven Climate Damage Functions For Capital Formation: Estimating The Climate Penalty Using Maching Learning, Pramudya Wicaksono

All Graduate Theses, Dissertations, and Other Capstone Projects

Traditional integrated assessment models assume parametric climate damage functions that may miss nonlinearities, heterogeneity, and dynamic effects on investment. This thesis develops a data-driven climate damage function for capital formation by estimating the predictive relationship between climate conditions and future gross fixed capital formation (% GDP) across 125 countries over 1982–2019. We construct a panel dataset by combining daily ERA5 climate reanalysis data (accessed via the Copernicus Climate Data Store API and aggregated to yearly country-level variables including temperature anomalies, extreme heat days, frost days, precipitation, and solar radiation) with economic indicators from the World Bank World Development Indicators and …


Array Signal Processing And Machine Learning In 5g/6g Networks, Roopesh Kumar Polaganga Jan 2026

Array Signal Processing And Machine Learning In 5g/6g Networks, Roopesh Kumar Polaganga

Electrical Engineering Dissertations - Archive

This dissertation investigates advanced methodologies in Array Signal Processing (ASP) and Machine Learning (ML) to enhance the performance, efficiency, and intelligence of next-generation wireless networks, with a primary focus on 5G and emerging 6G systems. As wireless networks face rapid traffic growth, increasingly heterogeneous service requirements, and more complex propagation environments, conventional design and optimization approaches become insufficient to meet evolving demands in reliability, capacity, spectral efficiency, and energy efficiency. On the network intelligence side, this work develops data-driven frameworks for causal discovery, scheduler enhancement, session-duration prediction, and Radio Resource Control (RRC) state optimization using real-world telecommunication network data. On …


Neighborhood Embeddings And Scalable Learning For Optimal Transport And Unbalanced Optimal Transport, Muhammad S. Rana Jan 2026

Neighborhood Embeddings And Scalable Learning For Optimal Transport And Unbalanced Optimal Transport, Muhammad S. Rana

Mathematics Dissertations - Archive

Dimensionality reduction techniques are developed from the assumption that high-dimensional data often arises from low-dimensional structures embedded into the high-dimensional ambient space. Classical dimensionality reduction methods rely on the Euclidean distance, which may fail to capture the geometric structures of the datasets. This dissertation includes alternative metrics for dimensionality reduction techniques and challenges in applying these techniques.

First, we investigate the Wasserstein distance based neighbor embeddings for dimensionality reduction methods and compare the classification and clustering performance with the classical Euclidean based methods. The Wasserstein distance models the data as probability distributions and compares two distributions applying optimal transport (OT) …


Understanding Phishing Susceptibility Through Expert Consensus Using Digital Marketing Parallels And A Machine Learning-Based Implementation, Mansoor Ahmad Jan 2026

Understanding Phishing Susceptibility Through Expert Consensus Using Digital Marketing Parallels And A Machine Learning-Based Implementation, Mansoor Ahmad

All Graduate Theses, Dissertations, and Other Capstone Projects

Phishing remains one of the most effective attack vectors for gaining unauthorized access to organizational systems, yet defenders often lack systematic methods to assess their exposure before an attack. This study develops a framework that uses machine learning to encode the collective expertise of cybersecurity practitioners into a portable phishing susceptibility assessment tool, with the goal to help security teams proactively identify patterns, prioritize awareness training, and strengthen detection controls. The study surveyed 27 practitioners with extensive experience in social engineering, red teaming, penetration testing, and threat analysis to identify which factors most influence phishing susceptibility. Practitioners provided quantitative ratings …


Analysis Of Surrogate Models At Multiple Levels For Neural Acceleration Of Hpc Applications, Bibek Panthi Jan 2026

Analysis Of Surrogate Models At Multiple Levels For Neural Acceleration Of Hpc Applications, Bibek Panthi

Theses

Due to rise of machine learning workloads, high performance computing platforms have increased GPU resources. Consequently, use of surrogate models, to utilize GPU compute and speedup scientific applications, is on the rise. Most of the time, the whole program is replaced with a surrogate model. In this work a shock simulation program (LULESH) was taken and three functions of varying complexity were replaced with small sized neural network as surrogate models. The speedup and error in output of whole program was analyzed. We found that for the smallest function, trained model lead to speedup of overall program by 40%, maintained …


Development Of Multimodal Measurements And Analysis For Early Detection Of Alzheimer’S Disease, Fiza Saeed Jan 2026

Development Of Multimodal Measurements And Analysis For Early Detection Of Alzheimer’S Disease, Fiza Saeed

Bioengineering Dissertations

Alzheimer's disease (AD) is the leading cause of dementia, and existing diagnostic methods such as PET scans, cerebrospinal fluid sampling and biomarker quantification, and gene sequencing are all either invasive, costly, or not sensitive enough for early detection. This dissertation introduces three different studies that develop a novel multimodal, non-invasive approach to diagnosing AD at its early stages by combining broad band near infrared spectroscopy (bbNIRS) and electroencephalography (EEG) technologies.

The first study showed cerebrovascular-cerebrospinal fluid coupling (CBV-CSF), which is measured by using 2-channel bbNIRS as an indicator of brain aging and early AD. Linear correlations between total blood (Δ[HbT]) …


Vision‑Based Online Quality Tracking In Wire Arc Additive Manufacturing Via Hybrid Unsupervised Deep Learning–Statistical Process Monitoring, Giulio Mattera, Yue Cao, Yuming Zhang, Luigi Nele Jan 2026

Vision‑Based Online Quality Tracking In Wire Arc Additive Manufacturing Via Hybrid Unsupervised Deep Learning–Statistical Process Monitoring, Giulio Mattera, Yue Cao, Yuming Zhang, Luigi Nele

Electrical and Computer Engineering Faculty Publications

Vision-based monitoring of Wire Arc Additive Manufacturing (WAAM) using supervised deep learning represents the state of the art in anomaly detection, but such approaches require large labeled datasets that are costly to obtain and typically limited to laboratory conditions. To address these limitations, this work proposes a hybrid deep learning–statistical process monitoring (SPM) framework tailored to the stochastic nature of conventional arc welding processes such as GMAW-based additive manufacturing, where existing methods often overfit. The framework integrates a residual convolutional autoencoder (Res-CAE) with skip connections, which jointly analyzes video frames to generate refined latent-space features that are subsequently monitored using …


Machine Learning-Based Lifetime Prediction Of Lithium Batteries: A Comparative Assessment For Electric Vehicle Applications, Abdelilah Hammou, Raffaele Petrone, Demba Diallo, Boubekeur Tala-Ighil, Philippe Makany Boussiengue, Hicham Chaoui, Hamid Gualous Jan 2026

Machine Learning-Based Lifetime Prediction Of Lithium Batteries: A Comparative Assessment For Electric Vehicle Applications, Abdelilah Hammou, Raffaele Petrone, Demba Diallo, Boubekeur Tala-Ighil, Philippe Makany Boussiengue, Hicham Chaoui, Hamid Gualous

Electrical & Computer Engineering Faculty Publications

This paper evaluates and compares four data-driven methods (Gaussian Process Regression (GPR), echo state network (ESN), gated recurrent unit (GRU), and long short-term memory (LSTM)) for lithium-ion capacity prognostics adapted to electric vehicle conditions. This comparison aims to find the most efficient prognosis method considering two constraints: the limitation of computational power and the unavailability of on-board capacity measurement that requires full charge and discharge conditions. The machine learning models are trained using capacity values estimated under vehicle conditions. The ageing data is collected from cycling tests of two battery chemistries, Lithium Fer Phosphate (LFP) and Nickel Manganese Cobalt (NMC), …


Machine Learning Classification Of Prostate Cancer Genomic Sequences Using K-Mer And Sequence-Derived Features, Kuldeep Rawat, Hirendra Nath Banerjee, Jamie Noble, Saa Naudia Deloatch, Satyendra Banerjee, Sachin Shetty, Soumya Banerjee Jan 2026

Machine Learning Classification Of Prostate Cancer Genomic Sequences Using K-Mer And Sequence-Derived Features, Kuldeep Rawat, Hirendra Nath Banerjee, Jamie Noble, Saa Naudia Deloatch, Satyendra Banerjee, Sachin Shetty, Soumya Banerjee

VMASC Publications

Prostate cancer disproportionately impacts African American men, who experience significantly higher mortality rates and earlier disease onset than other populations. Current diagnostic approaches, including prostate-specific antigen testing and biopsy, lack sufficient specificity and sensitivity, underscoring the need for accurate, molecular-level classification tools. This paper presents a machine learning framework for binary classification of genomic DNA sequences as cancerous or healthy. A dataset of 1684 FASTA-formatted sequences obtained from the National Library of Medicine - GenBank was analyzed, with 1662 sequences retained after quality control filtering. Feature engineering yielded 67 attributes, including GC content, Shannon entropy, sequence length, and trinucleotide k-mer …


Passive Communication Across Diverse Swarm Formations And Scales Utilizing Wake Signatures For Messaging And Object Inference, Bryan Varela Jan 2026

Passive Communication Across Diverse Swarm Formations And Scales Utilizing Wake Signatures For Messaging And Object Inference, Bryan Varela

Open Access Master's Theses

Passive wake signatures in fluid flows can support perception and low-rate communication in swarms. In cluttered or contested underwater environments, conventional acoustic, radio, and optical links can be power-hungry, intermittent, or undesirable when low observability is required. Wake-mediated cues offer a local, directional channel that does not require line of sight because each agent naturally sheds coherent vortices that persist downstream and can be sampled by followers with only a small number of probes.

This study evaluates whether sparse downstream probes are sufficient to infer agent attributes and decode simple messages from wakes generated by established source shapes. Computational fluid …


Making Words Count: Computational Linguistics In Management Research, Joseph J. Simpson, Richard A. Hunt, David M. Townsend, Judy Rady, Elham Asgari, Mohammad Rady, Daniel J. Beal Jan 2026

Making Words Count: Computational Linguistics In Management Research, Joseph J. Simpson, Richard A. Hunt, David M. Townsend, Judy Rady, Elham Asgari, Mohammad Rady, Daniel J. Beal

International Business and Entrepreneurship Faculty Publications

In recent years, a rapidly growing number of management scholars are using computational linguistics (CL) to analyze vast corpora of naturally occurring organizational language. Yet the rapid adoption of CL methods has outpaced the development of shared standards for linking theoretical constructs, linguistic data, and computational measurement. We synthesize 353 articles published in leading management journals for 2013–2025, identifying four recurring challenges shaping the credibility of CL-based research: misalignment between constructs and textual corpora, unnecessary model complexity, the opacity of large language model workflows, and insufficient transparency in reporting. Building on these patterns, we develop four integrative design principles—construct-language fit, …


Metagenomic Polymorphic Toxin Effector And Immunity Profiling Predicts Microbiome Development And Disease-Related Dysbiosis, Hunter W. Schroer, Francesco Beghini, Juan Antonio Raygoza Garay, Nicholas A. Christakis, Dustin E. Bosch Jan 2026

Metagenomic Polymorphic Toxin Effector And Immunity Profiling Predicts Microbiome Development And Disease-Related Dysbiosis, Hunter W. Schroer, Francesco Beghini, Juan Antonio Raygoza Garay, Nicholas A. Christakis, Dustin E. Bosch

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

Bacteria use antagonistic interbacterial weapons, such as polymorphic toxin secretion systems (TSS), to compete for niches in the human gut microbiome. We hypothesized that TSS influence gut microbiome development and disease-related dysbiosis. We developed a bioinformatic marker gene approach (PolyProf) to quantify TSS including ~200 effector and immunity genes and applied it to ~15,000 publicly available human metagenomes. PolyProf alpha and beta diversity readily distinguished 12 different human disease states and enabled the construction of highly accurate linear regression classifier machine learning models. Elastic net machine learning models integrating bacterial taxonomy with PolyProf had strong predictive value for 12 disease …


Quantitative Assessment Of Roasted Coffee Freshness Over Time Using Multi-Parameter Analysis, Maya Fetzer Jan 2026

Quantitative Assessment Of Roasted Coffee Freshness Over Time Using Multi-Parameter Analysis, Maya Fetzer

Honors Theses

Roasted coffee undergoes continuous chemical and physical degradation after roasting, yet industry freshness standards remain empirically defined rather than grounded in measurable parameters. This study developed a multi-parameter framework for quantifying roasted coffee freshness by integrating gas-phase and solid-phase analysis, backed by human sensory evaluation, across three roast levels — light (City+), medium (Full City), and dark (Vienna) — over a four-month storage period. CO2 off-gassing was monitored continuously for 30 day, gas chromatography-mass spectrometry (GC-MS) tracked volatile compound changes in headspace gas, and Fourier transform infrared-diffuse reflectance spectroscopy (FTIR-DRIFTS) quantified oxidation-associated functional group changes, and microindentation assessed bean stiffness. …


Effects Of Metal-Modified Catalysts On The Desorption Performance Of Mixed Amine Solutions And Machine Learning Prediction, Xunxuan Heng, Zhenzhen Zhang, Longhua Zhu, Li Yang, Shugang Xie, Zeyu Wang, Dongtai Han, Fang Liu, Kunlei Liu Jan 2026

Effects Of Metal-Modified Catalysts On The Desorption Performance Of Mixed Amine Solutions And Machine Learning Prediction, Xunxuan Heng, Zhenzhen Zhang, Longhua Zhu, Li Yang, Shugang Xie, Zeyu Wang, Dongtai Han, Fang Liu, Kunlei Liu

Mechanical Engineering Faculty Publications

The high energy penalty associated with solvent regeneration is still a major bottleneck in amine-based CO2 capture. In this work, the effects of five solid acid catalysts on the desorption performance of a mixed-amine solvent were compared, and the HY catalyst with superior desorption behavior was selected and further modified with four transition metals (Co, Mn, Gr and Ce) to enhance its catalytic activity. The findings indicate that the CO2 desorption capacity and maximum desorption rate of the Co-modified HY catalyst reach 48.96 mmol and 0.02211 mmol/s, corresponding to increases of 36.80% and 35.39% relative to the blank …


Optimizing Ucs Prediction Models Through Xai-Based Feature Selection In Soil Stabilization, Ahmed Mohammed Awad Mohammed, Omayma Husain, Mosab Hamdan, Abdalmomen Mohammed, Abdullah Ansari, Atef Badr, Abubakar Elsafi, Abubakr Siddig Jan 2026

Optimizing Ucs Prediction Models Through Xai-Based Feature Selection In Soil Stabilization, Ahmed Mohammed Awad Mohammed, Omayma Husain, Mosab Hamdan, Abdalmomen Mohammed, Abdullah Ansari, Atef Badr, Abubakar Elsafi, Abubakr Siddig

Research Outputs: 2025-Present

Unconfined Compressive Strength (UCS) is a key parameter for the assessment of the stability and performance of stabilized soils, yet traditional laboratory testing is both time and resource intensive. In this study, an interpretable machine learning approach to UCS prediction is presented, pairing five models (Random Forest (RF), Gradient Boosting (GB), Extreme Gradient Boosting (XGB), CatBoost, and K-Nearest Neighbors (KNN)) with SHapley Additive exPlanations (SHAP) for enhanced interpretability and to guide feature removal. A complete dataset of 12 geotechnical and chemical parameters, i.e., Atterberg limits, compaction properties, stabilizer chemistry, dosage, curing time, was used to train and test the models. …