Digital Commons Network^™

Characterizing Regime-Based Flow Uncertainty, John L. Fioretti

Theses and Dissertations

The goal of this work is to develop a regime-based quantification of horizontal wind field uncertainty utilizing a global ensemble numerical weather prediction model. In this case, the Global Ensemble Forecast System Reforecast (GEFSR) data is utilized. The machine learning algorithm that is employed is the mini-batch K-means clustering algorithm. 850 hPa Horizontal flow fields are clustered and the forecast uncertainty in these flow fields is calculated for different forecast times for regions across the globe. This provides end-users quantified flow-based forecast uncertainty.

A Machine Learning Approach To Characterizing Particle Morphology In Nuclear Forensics, Daniel A. Gum

Theses and Dissertations

A machine learning approach is taken to characterizing a group of synthetic uranium bearing particles. SEM images of these lab-created particles were converted into a binary representation that captured morphological features in accordance with a guide established by Los Alamos National Laboratory. Each particle in the dataset contains an association with chemical creation conditions: processing method, precipitation temperature and pH, calcination temperature are most closely tied to particle morphology. Additionally, trained classifiers are able to relate final products between particles, implying that morphological features are shared between particles with similar composition.

Algorithm Selection Framework: A Holistic Approach To The Algorithm Selection Problem, Marc W. Chalé

Theses and Dissertations

A holistic approach to the algorithm selection problem is presented. The “algorithm selection framework" uses a combination of user input and meta-data to streamline the algorithm selection for any data analysis task. The framework removes the conjecture of the common trial and error strategy and generates a preference ranked list of recommended analysis techniques. The framework is performed on nine analysis problems. Each of the recommended analysis techniques are implemented on the corresponding data sets. Algorithm performance is assessed using the primary metric of recall and the secondary metric of run time. In six of the problems, the recall of …

Visual Exploration Of Utah Trajectory Data And Their Applications In Transportation, Seth Miller, Zachary Vander Laan, Yinhu Wang, Nikola Markovic

TREC Final Reports

Transportation agencies have an opportunity to leverage massive GPS trajectory data to support their analyses and enhance their decision making. However, these data are typically purchased from vendors, which means that transportation agencies must understand their benefits before they decide to invest in data acquisition. To help transportation agencies better understand the tremendous value of trajectory data, the PI of the project acquired Utah GPS trajectory data from one of the leading GPS data providers and conducted visual analyses demonstrating applications of trajectory data in various areas of transportation. The analyses focused on (a) evaluating the data itself by exploring …

Machine Learning Predicts Reach-Scale Channel Types From Coarse-Scale Geospatial Data In A Large River Basin, Hervé Guillon, Colin F. Byrne, Belize A. Lane, Samuel Sandoval Solis, Gregory B. Pasternack

Publications

Hydrologic and geomorphic classifications have gained traction in response to the increasing need for basin-wide water resources management. Regardless of the selected classification scheme, an open scientific challenge is how to extend information from limited field sites to classify tens of thousands to millions of channel reaches across a basin. To address this spatial scaling challenge, this study leverages machine learning to predict reach-scale geomorphic channel types using publicly available geospatial data. A bottom-up machine learning approach selects the most accurate and stable model among∼20,000 combinations of 287 coarse geospatial predictors, preprocessing methods, and algorithms in a three-tiered framework to …

Cyber-Physical Security With Rf Fingerprint Classification Through Distance Measure Extensions Of Generalized Relevance Learning Vector Quantization, Trevor J. Bihl, Todd J. Paciencia, Kenneth W. Bauer Jr., Michael A. Temple

Faculty Publications

Radio frequency (RF) fingerprinting extracts fingerprint features from RF signals to protect against masquerade attacks by enabling reliable authentication of communication devices at the “serial number” level. Facilitating the reliable authentication of communication devices are machine learning (ML) algorithms which find meaningful statistical differences between measured data. The Generalized Relevance Learning Vector Quantization-Improved (GRLVQI) classifier is one ML algorithm which has shown efficacy for RF fingerprinting device discrimination. GRLVQI extends the Learning Vector Quantization (LVQ) family of “winner take all” classifiers that develop prototype vectors (PVs) which represent data. In LVQ algorithms, distances are computed between exemplars and PVs, and …

Analysis Of Identification Method For Bacterial Species And Antibiotic Resistance Genes Using Optical Data From Dna Oligomers, Ryan L. Wood, Tanner Jensen, Cindi Wadsworth, Mark Clement, Prashant Nagpal, William G. Pitt

Faculty Publications

Bacterial antibiotic resistance is becoming a significant health threat, and rapid identification of antibiotic-resistant bacteria is essential to save lives and reduce the spread of antibiotic resistance. This paper analyzes the ability of machine learning algorithms (MLAs) to process data from a novel spectroscopic diagnostic device to identify antibiotic-resistant genes and bacterial species by comparison to available bacterial DNA sequences. Simulation results show that the algorithms attain from 92% accuracy (for genes) up to 99% accuracy (for species). This novel approach identifies genes and species by optically reading the percentage of A, C, G, T bases in 1000s of short …

Analysis Of Identification Method For Bacterial Species And Antibiotic Resistance Genes Using Optical Data From Dna Oligomers, Ryan L. Wood, Tanner Jensen, Cindi Wadsworth, Mark Clement, Prashant Nagpal, William G. Pitt

Faculty Publications

Bacterial antibiotic resistance is becoming a significant health threat, and rapid identification of antibiotic-resistant bacteria is essential to save lives and reduce the spread of antibiotic resistance. This paper analyzes the ability of machine learning algorithms (MLAs) to process data from a novel spectroscopic diagnostic device to identify antibiotic-resistant genes and bacterial species by comparison to available bacterial DNA sequences. Simulation results show that the algorithms attain from 92% accuracy (for genes) up to 99% accuracy (for species). This novel approach identifies genes and species by optically reading the percentage of A, C, G, T bases in 1000s of short …

Predicting Pilot Misperception Of Runway Excursion Risk Through Machine Learning Algorithms Of Recorded Flight Data, Edwin Vincent Odisho Ii

Doctoral Dissertations and Master's Theses

The research used predictive models to determine pilot misperception of runway excursion risk associated with unstable approaches. The Federal Aviation Administration defined runway excursion as a veer-off or overrun of the runway surface. The Federal Aviation Administration also defined a stable approach as an aircraft meeting the following criteria: (a) on target approach airspeed, (b) correct attitude, (c) landing configuration, (d) nominal descent angle/rate, and (e) on a straight flight path to the runway touchdown zone. Continuing an unstable approach to landing was defined as Unstable Approach Risk Misperception in this research. A review of the literature revealed that an …

Are The Code Snippets What We Are Searching For? A Benchmark And An Empirical Study On Code Search With Natural-Language Queries, Shuhan Yan, Hang Yu, Yuting Chen, Beijun Shen

Research Collection School Of Computing and Information Systems

Code search methods, especially those that allow programmers to raise queries in a natural language, plays an important role in software development. It helps to improve programmers' productivity by returning sample code snippets from the Internet and/or source-code repositories for their natural-language queries. Meanwhile, there are many code search methods in the literature that support natural-language queries. Difficulties exist in recognizing the strengths and weaknesses of each method and choosing the right one for different usage scenarios, because (1) the implementations of those methods and the datasets for evaluating them are usually not publicly available, and (2) some methods leverage …

Harnessing Artificial Intelligence Capabilities To Improve Cybersecurity, Sherali Zeadally, Erwin Adi, Zubair Baig, Imran A. Khan

Information Science Faculty Publications

Cybersecurity is a fast-evolving discipline that is always in the news over the last decade, as the number of threats rises and cybercriminals constantly endeavor to stay a step ahead of law enforcement. Over the years, although the original motives for carrying out cyberattacks largely remain unchanged, cybercriminals have become increasingly sophisticated with their techniques. Traditional cybersecurity solutions are becoming inadequate at detecting and mitigating emerging cyberattacks. Advances in cryptographic and Artificial Intelligence (AI) techniques (in particular, machine learning and deep learning) show promise in enabling cybersecurity experts to counter the ever-evolving threat posed by adversaries. Here, we explore AI's …

Innovative Identification Of Substance Use Predictors: Machine Learning In A National Sample Of Mexican Children, Alejandro L. Vázquez, Melanie M. Domenech Rodríguez, Tyson S. Barrett, Sarah E. Schwartz [email protected], Nancy G. Amador Buenabad, Marycarmen N. Bustos Gamiño, María De Lourdes Gutiérrez López, Jorge A. Villatoro Velázquez

Psychology Faculty Publications

Machine learning provides a method of identifying factors that discriminate between substance users and non-users potentially improving our ability to match need with available prevention services within context with limited resources. Our aim was to utilize machine learning to identify high impact factors that best discriminate between substance users and non-users among a national sample (N = 52,171) of Mexican children (i.e., 5th, 6th grade; Mage = 10.40, SDage = 0.82). Participants reported information on individual factors (e.g., gender, grade, religiosity, sensation seeking, self-esteem, perceived risk of substance use), socioecological factors (e.g., neighborhood quality, community type, peer influences, parenting), and …

Diverse Approaches To Predicting Drug-Induced Liver Injury Using Gene-Expression Profiles, G. Rex Sumsion, Michael S. Bradshaw Iii, Jeremy T. Beales, Emi Ford, Griffin R. G. Caryotakis, Daniel J. Garrett, Emily D. Lebaron, Ifeanyichukwu O. Nwosu, Stephen R. Piccolo

Faculty Publications

Background

Drug-induced liver injury (DILI) is a serious concern during drug development and the treatment of human disease. The ability to accurately predict DILI risk could yield significant improvements in drug attrition rates during drug development, in drug withdrawal rates, and in treatment outcomes. In this paper, we outline our approach to predicting DILI risk using gene-expression data from Build 02 of the Connectivity Map (CMap) as part of the 2018 Critical Assessment of Massive Data Analysis CMap Drug Safety Challenge.

Results

First, we used seven classification algorithms independently to predict DILI based on gene-expression values for two cell lines. …

Digital Libraries, Intelligent Data Analytics, And Augmented Description: A Demonstration Project, Elizabeth Lorang, Leen-Kiat Soh, Yi Liu, Chulwoo Pack

University of Nebraska-Lincoln Libraries: Faculty Publications

From July 16-to November 8, 2019, the Aida digital libraries research team at the University of Nebraska-Lincoln collaborated with the Library of Congress on “Digital Libraries, Intelligent Data Analytics, and Augmented Description: A Demonstration Project.“ This demonstration project sought to (1) develop and investigate the viability and feasibility of textual and image-based data analytics approaches to support and facilitate discovery; (2) understand technical tools and requirements for the Library of Congress to improve access and discovery of its digital collections; and (3) enable the Library of Congress to plan for future possibilities. In pursuit of these goals, we focused our …

Gradient Boosting For Survival Analysis With Applications In Oncology, Nam Phuong Nguyen

USF Tampa Graduate Theses and Dissertations

Cancer is one of the most deadly diseases that the world has been fighting against over decades. An enormous number of research has been conducted, via a wide scale of approaches, raging from genetic analysis to mathematical modeling. Survival analysis is a well-performed methodology frequently used to estimate the survival probability of a patient. Although there has been a large number of methods for survival analysis, efficient exploration of a high-dimensional feature space has been challenging due to its computational cost and complexity. This thesis adapts the component-wise gradient boosting algorithms for cancer survival analysis, and also proposes a new …

A Systematic Literature Survey Of Unmanned Aerial Vehicle Based Structural Health Monitoring, Sreehari Sreenath

Theses, Dissertations and Capstones

Unmanned Aerial Vehicles (UAVs) are being employed in a multitude of civil applications owing to their ease of use, low maintenance, affordability, high-mobility, and ability to hover. UAVs are being utilized for real-time monitoring of road traffic, providing wireless coverage, remote sensing, search and rescue operations, delivery of goods, security and surveillance, precision agriculture, and civil infrastructure inspection. They are the next big revolution in technology and civil infrastructure, and it is expected to dominate more than $45 billion market value. The thesis surveys the UAV assisted Structural Health Monitoring or SHM literature over the last decade and categorize UAVs …

Mining The Harvard Caselaw Access Project, Felix B. Chang, Erin Mccabe, James Lee

Faculty Articles and Other Publications

This Essay illustrates how machine learning can disrupt legal scholarship through the algorithmic extraction and analysis of big data. Specifically, we utilize data from Harvard Law School’s Caselaw Access Project to model how courts tackle two thorny question in antitrust: the measure of market power and the balance between antitrust and regulation.

Statistical Learning Methods To Predict Activity Intensity From Body-Worn Accelerometers, Drew M. Lazar, Munni Begum, Monzur Murshed, Benjamin Nelson, Joshua M. Bock, Mary T. Imboden, Leonard Kaminsky, Alex Hk Montoye

Faculty Publications - Department of Kinesiology

 Physical activity, especially when performed at moderate or vigorous intensity, has short- and long-term health benefits, but measurement of free-living physical activity is challenging. Accelerometers are popular tools to assess physical activity, although accuracy of conventional accelerometer analysis methods is suboptimal. This study developed and tested statistical learning models for assessing activity intensity from body-worn accelerometers. Twenty-eight adults performed 10-21 activities of daily living in two visits while wearing four accelerometers (right hip, right ankle, both wrists). Accelerometer placement is of crucial practical concern and this paper addresses this issue. Boosting, bagging, random forest and decision tree models were …

Facial Action Unit Detection With Deep Convolutional Neural Networks, Siddhesh Padwal

Electronic Theses and Dissertations

The facial features are the most important tool to understand an individual's state of mind. Automated recognition of facial expressions and particularly Facial Action Units defined by Facial Action Coding System (FACS) is challenging research problem in the field of computer vision and machine learning. Researchers are working on deep learning algorithms to improve state of the art in the area. Automated recognition of facial action units has man applications ranging from developmental psychology to human robot interface design where companies are using this technology to improve their consumer devices (like unlocking phone) and for entertainment like FaceApp. Recent studies …

Analysis Of Massive Online Medical Consultation Service Data To Understand Physicians’ Economic Return: Observational Data Mining Study, Jinglu Jiang, Ann-Frances Cameron, Ming Yang

Management and Accounting Faculty Scholarship

Background: Online health care consultation has become increasingly popular and is considered a potential solution to health care resource shortages and inefficient resource distribution. However, many online medical consultation platforms are struggling to attract and retain patients who are willing to pay, and health care providers on the platform have the additional challenge of standing out in a crowd of physicians who can provide comparable services. Objective: This study used machine learning (ML) approaches to mine massive service data to (1) identify the important features that are associated with patient payment, as opposed to free trial–only appointments; (2) explore the …

Renewable Energy Integration In Distribution System With Artificial Intelligence, Yi Gu

Electronic Theses and Dissertations

With the increasing attention of renewable energy development in distribution power system, artificial intelligence (AI) can play an indispensiable role. In this thesis, a series of artificial intelligence based methods are studied and implemented to further enhance the performance of power system operation and control.

Due to the large volume of heterogeneous data provided by both the customer and the grid side, a big data visualization platform is built to feature out the hidden useful knowledge for smart grid (SG) operation, control and situation awareness. An open source cluster calculation framework with Apache Spark is used to discover big data …

Fluorescent Sensor Arrays Can Predict And Quantify The Composition Of Multicomponent Bacterial Samples, Denis Svechkarev, Marat Sadykov, Lucas J. Houser, Kenneth W. Bayles, Aaron M. Mohs

Journal Articles: Pathology and Microbiology

Fast and reliable identification of infectious disease agents is among the most important challenges for the healthcare system. The discrimination of individual components of mixed infections represents a particularly difficult task. In the current study we further expand the functionality of a ratiometric sensor array technology based on small-molecule environmentally-sensitive organic dyes, which can be successfully applied for the analysis of mixed bacterial samples. Using pattern recognition methods and data from pure bacterial species, we demonstrate that this approach can be used to quantify the composition of mixtures, as well as to predict their components with the accuracy of ~80% …

Automated Recognition Of Facial Affect Using Deep Neural Networks, Behzad Hasani

Electronic Theses and Dissertations

Automated Facial Expression Recognition (FER) has been a topic of study in the field of computer vision and machine learning for decades. In spite of efforts made to improve the accuracy of FER systems, existing methods still are not generalizable and accurate enough for use in real-world applications. Many of the traditional methods use hand-crafted (a.k.a. engineered) features for representation of facial images. However, these methods often require rigorous hyper-parameter tuning to achieve favorable results.

Recently, Deep Neural Networks (DNNs) have shown to outperform traditional methods in visual object recognition. DNNs require huge data as well as powerful computing units …

An Analysis Of The Success Of Farmers Markets In Kentucky Using Logistic Regression And Support Vector Machines, Jeron Russell

Mahurin Honors College Capstone Experience/Thesis Projects

The purpose of this research is to look at the relationship that market-specific, economic, and demographic variables have with the success of farmers markets in Kentucky. It additionally seeks to build a tool for predicting farmers market success that could be used by policy makers to aid in decision-making processes concerning farmers markets. Logistic regression and Support Vector Machines (SVMs) are used on data acquired from the Kentucky Department of Agriculture and the American Community Survey in order to analyze the data in a traditional statistical approach as well as a machine learning approach. The results included an SVM model …

Development Of Machine Learning Tutorials For R, John Pintar

All Undergraduate Theses and Capstone Projects

Machine learning (ML) techniques developed in computer science have revolutionized nearly every sector of industry. Despite the prevalence and usefulness of ML, students outside of computer science rarely receive training in ML. Students frequently receive training in statistical analysis, often using the software package R, which is free, open source, and has additional downloadable modules. A popular module is the ML package caret, which contains 238 different ML algorithms, each with 0-9 hyperparameters. caret is powerful, flexible, and provides consistent syntax across algorithms. In the hands of an experienced practitioner, this tunability is welcomed and can increase accuracy. However, when …

Revised Polyhedral Conic Functions Algorithm For Supervised Classification, Gürhan Ceylan, Gürkan Öztürk

Turkish Journal of Electrical Engineering and Computer Sciences

In supervised classification, obtaining nonlinear separating functions from an algorithm is crucial for prediction accuracy. This paper analyzes the polyhedral conic functions (PCF) algorithm that generates nonlinear separating functions by only solving simple subproblems. Then, a revised version of the algorithm is developed that achieves better generalization and fast training while maintaining the simplicity and high prediction accuracy of the original PCF algorithm. This is accomplished by making the following modifications to the subproblem: extension of the objective function with a regularization term, relaxation of a hard constraint set and introduction of a new error term. Experimental results show that …

Implementation Considerations For Mitigating Bias In Supervised Machine Learning, Bardia Bijani Aval

CSB and SJU Distinguished Thesis

Machine Learning (ML) is an important component of computer science and a mainstream way of making sense of large amounts of data. Although the technology is establishing new possibilities in different fields, there are also problems to consider, one of which is bias. Due to the inductive reasoning of ML algorithms in creating mathematical models, the predictions and trends found by the models will never necessarily be true – just more or less probable. Knowing this, it is unreasonable for us to expect the applied deductive reasoning of these models to ever be fully unbiased. Therefore, it is important that …

A Machine Learning System For Glaucoma Detection Using Inexpensive Machine Learning, Jon Kilgannon

West Chester University Master’s Theses

This thesis presents a neural network system which segments images of the retina to calculate the cup-to-disc ratio, one of the diagnostic indicators of the presence or continuing development of glaucoma, a disease of the eye which causes blindness. The neural network is designed to run on commodity hardware and to be run with minimal skill required from the user by packaging the software required to run the network into a Singularity image. The RIGA dataset used to train the network provides images of the retina which have been annotated with the location of the optic cup and disc by …

Development Of A System Architecture For The Prediction Of Student Success Using Machine Learning Techniques, Tatiana A. Cardona

Doctoral Dissertations

“ The goals of higher education have evolved through time based on the impact that technology development and industry have on productivity. Nowadays, jobs demand increased technical skills, and the supply of prepared personnel to assume those jobs is insufficient. The system of higher education needs to evaluate their practices to realize the potential of cultivating an educated and technically skilled workforce. Currently, completion rates at universities are too low to accomplish the aim of closing the workforce gap. Recent reports indicate that 40 percent of freshman at four-year public colleges will not graduate, and rates of completion are even …

Using Machine Learning And Text Mining Algorithms To Facilitate Research Discovery Of Plant Food Metabolomics And Its Application For Human Health Benefit Targets, Jithin Jose Mathew

Genomics and Bioinformatics

With the increase in scholarly articles published every day, the need for an automated systematic exploratory literature review tool is rising. With the advance in Text Mining and Machine Learning methods, such data exploratory tools are researched and developed in every scientific domain. This research aims at finding the best keyphrase extraction algorithm and topic modeling algorithm that is going to be the foundation and main component of a tool that will aid in Systematic Literature Review. Based on experimentation on a set of highly relevant scholarly articles published in the domain of food science, two graph-based keyphrase extraction algorithms, …