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Crispr Genetic Editing: Paths For Christian Acceptance And Analysis Of In Vivo And In Vitro Efficiency, Mandeep Sandhu

Scripps Senior Theses

With advancements in CRISPR-cas9 broadening the potential paths for clinical usage of genetic editing, conversations about genetic editing have grown to outside simply scientific communities and into mainstream conversations. This study focuses specifically on Christian discourse of genetic editing and locates four major tensions for many Christians when they think about genetic editing: beginning of life, Creator-human relationship, imago Dei, and stewardship. With these major concerns in mind, I identify epigenetics, somatic cell genetic editing, and in vivo genetic editing research as important research paths to pursue as they can potentially produce techniques that more Christian individuals would feel comfortable …

Long-Term Outcome And Complications Of 32 Distal Femoral Osteotomies Performed For Correction Of Mpl In Dogs Without Cranial Cruciate Disease, Nicholas Crawfis

Williams Honors College, Honors Research Projects

Many canines suffer severe, grade I-IV, medial patella luxation causing a persistent lameness, severely reducing the quality of life for the dog (Linney et al 2011). For these patients surgical intervention is recommended to alleviate these symptoms. The procedure used to do so is a distal femoral osteotomy (DFO). This procedure allows for correction of torsion in the femur and quadriceps mechanism, and frontal plane abnormalities at the same time. The present study aims to describe the long-term outcome and related complications of 32 DFOs, without concomitant Cranial Cruciate Ligament rupture (CCLR), in a large private practice referral hospital based …

Lipin1 Regulates Skeletal Muscle Differentiation Through The Pkc/Hdac5/Mef2c:Myod -Mediated Pathway, Abdulrahman M. Jama

Browse all Theses and Dissertations

Our previous characterization of global lipin1-deficient (fld) mice demonstrated that lipin1 played a novel role in skeletal muscle (SM) regeneration. The clinical relevance of lipin1 has been observed in patients with lipin1 null mutations where they exhibited severe rhabdomyolysis with aggregated and dysfunctional mitochondria. Lipin1 is a key gene that plays an important role in lipid biosynthesis and metabolism. It has dual functions as it contains a phosphatase activity that converts phosphatidic acid (PA) to diacylglycerol (DAG), the penultimate step in triglycerides (TAG) biosynthesis as well as transcriptional co-activator function. In the cytosol and ER, lipin1 carries out its lipid …

The Effects Of Aqueous Nitrate On Freshwater Crayfish, Erik Hartman

Williams Honors College, Honors Research Projects

Globalization and a rising need for greater production from the agricultural system have increased the use of fertilizer by farms across the entire country. The purpose of this experiment was to observe the effects of aqueous nitrate (commonly found in many fertilizers) on the metabolic rate and hemolymph lactate concentration of freshwater crayfish. After exposure, there was no observed change in metabolic rate, but there was a significant decrease in hemolymph lactate concentration in the groups exposed to nitrate.

Evidence That A Partner-Switching Regulatory System Modulates Hormogonium Motility In The Filamentous Cyanobacterium Nostoc Punctiforme, Kelsey Wynne Riley

University of the Pacific Theses and Dissertations

Partner-switching regulatory systems (PSRSs) are utilized by many different bacteria to regulate a wide array of cellular responses, from stress response to expression of virulence factors. The filamentous cyanobacterium Nostoc punctiforme can transiently differentiate motile filaments, called hormogonia, in response to various changes in the environment. Hormogonia utilize a Type IV pilus (T4P) complex in conjunction with a secreted polysaccharide for gliding motility along solid surfaces. This study identified three genes, designated hmpU, hmpW, and hmpV, encoding the protein components of a PSRS involved in regulation of hormogonium motility in N. punctiforme. Although mutant strains with in-frame deletions in hmpU, …

Osmotic Activation Of Sperm Motility Via Water Flow Through Aquaporins In The Freeze-Tolerant Cope's Gray Treefrog, Dryophytes Chrysoscelis, Deja Miller

Browse all Theses and Dissertations

Gametes of gray treefrogs, Dryophytes chrysoscelis, are deposited into freshwater ponds. Sperm undergo spermatogenesis and maturation beginning in the seminiferous tubules and migrating to the lumen. In mammals and fishes, these cells are immotile within the isosmotic fluid of the testes and have motility activated by exposure to a hyper- or hypoosmotic medium. Water flows into or out of the sperm cell, altering intracellular ionic concentrations, and ultimately stimulates flagellar movement. We tested the hypothesis that exposure to a hypotonic environment activates motility of gray treefrog sperm. We also hypothesized that osmotic water uptake is facilitated by expression of water …

River Biofilm Structure And Function In A Resource Landscape Modified By Agriculture: Implications For Primary Consumers, Hannah M. Fazekas

Browse all Theses and Dissertations

Anthropogenic alterations to nitrogen, carbon, and phosphorus bioavailability have increased the flux of these resources into the biosphere and altered stream ecosystem function. Streams modify the transport of these resources to receiving ecosystems through uptake, transformation, and mineralization. Understanding how streams process carbon, nitrogen, and phosphorus can provide insight about how stream ecosystems function in landscapes where human modification is inescapable. I investigated how land use in agricultural regions affect resource availability to primary producers and consumers and the subsequent impact on stream processes. I surveyed headwater streams in three Lake Erie watersheds to determine spatiotemporal nutrient limitation of attached …

Role Of Natural Antioxidants From Functional Foods In Neurodegenerative And Metabolic Disorders, José Carvalho, Caio P. Fernandes, Júlio Beltrame Daleprane, Maria Silvana Alves, Didier Stien, N. P. Dhammika Nanayakkara

Faculty and Student Publications (Open Access)

No abstract provided.

Effects Of 5-Hydroxymethylcytosine Epigenetic Modification On The Stability And Molecular Recognition Of Vegf I-Motif And G-Quadruplex Structures, Rhianna Morgan, Michael M. Molnar, Harshul Batra, Bethany Summerford, Randy M. Wadkins, Tracy A. Brooks

Faculty and Student Publications (Open Access)

No abstract provided.

Neuromuscular Control Of The Calling Apparatus In The Túngara Frog (Engystomops Pustulosus), Kiran Kaur Grewal

University of the Pacific Theses and Dissertations

Male túngara frogs can add a distinctive note ("chuck”) to their mating call. Production of the chuck involves vibrating a pair of laryngeal fibrous masses that is attached to the vocal cords. The muscular control of this mechanism remains unknown. Recent studies revealed a split in the laryngeal dilator muscle, which unveiled the deep dilator as a novel laryngeal muscle with unique attachments, innervation, and (likely) function. The deep dilator may position the fibrous masses for chuck production. The goals of this study were 1) to confirm the innervation of the novel muscle through electrophysiology; and 2) to determine the …

Noradrenergic Tuning, Not Simple Rate Effects, Produces Temperature-Sensitivity Of The Respiratory Network In Bullfrogs, Mauricio Vallejo

Browse all Theses and Dissertations

Animals match ventilation to metabolic and acid-base regulatory demands during changes in body temperature. Across vertebrates ventilation increases at warmer temperatures and decreases at cooler temperatures. At the organismal level this is attributed to metabolic feedback and/or alpha-stat pH regulation; however, the cellular mechanisms that produce ventilatory output in response to brain temperature changes remain unclear. To identify mechanisms underlying temperature-sensitivity of the respiratory control network, I used brainstem-spinal cord preparations producing spontaneously active, rhythmic motor output similar to breathing in vivo of adult bullfrogs Lithobates catesbeianus. In vitro brainstem-spinal cords were superfused with artificial cerebrospinal fluid (aCSF) equilibrated at …

Characterization Of The Effect Of Optineurin On Alpha-Synuclein Aggregation And Toxicity In Yeast, Md Moydul Islam

Browse all Theses and Dissertations

Optineurin, an autophagy adaptor protein genetically linked to Normal Tension Glaucoma and Amyotrophic Lateral Sclerosis, has been found in the pathological inclusions of various other neurodegenerative disorders, supporting an important role of optineurin in neurodegeneration. Using yeast as a model, we found that overexpression of optineurin drastically enhances the toxicity of the Parkinson's disease-causing protein, alpha-synuclein. Considering the conserved protein-protein interaction between optineurin and Ypt1, a yeast suppressor of the toxicity of both optineurin and alpha-synuclein, we hypothesize that cellular targets of optineurin underlie in the cytotoxicity and the enhancer effect. Using genome-wide yeast two-hybrid screens, we identified 97 yeast …

Opioids Delay Healing Of Spinal Fusion: A Rabbit Posterolateral Lumbar Fusion Model, Nikhil Jain, Khaled Himed, Jeffrey M. Toth, Karen C. Briley, Frank M. Phillips, Safdar N. Khan

Biomedical Engineering Faculty Research and Publications

Background Context

Opioid use is prevalent in the management of pre- and postoperative pain in patients undergoing spinal fusion. There is evidence that opioids downregulate osteoblasts in vitro, and a previous study found that morphine delays the maturation and remodeling of callus in a rat femur fracture model. However, the effect of opioids on healing of spinal fusion has not been investigated before. Isolating the effect of opioid exposure in humans would be limited by the numerous confounding factors that affect fusion healing. Therefore, we have used a well-established rabbit model to study the process of spinal fusion healing that …

Endocrine Responses To Repeated Adrenocorticotropic Hormone Administration In Free-Ranging Elephant, Molly Mccormley

University of the Pacific Theses and Dissertations

Understanding the physiological response of marine mammals to anthropogenic stressors can inform marine ecosystem conservation strategies. Stress stimulates release of glucocorticoid (GC) hormones, which increase energy substrate availability while suppressing energy-intensive processes. Exposure to repeated stressors can potentially affect an animal’s ability to respond to and recover from subsequent challenges. To assess the endocrine response of a marine mammal to repeated stressors, we administered adrenocorticotropic hormone (ACTH) to free-ranging juvenile northern elephant seals (Mirounga angustirostris; n=7) once daily for four days. ACTH administration induced significant, but transient (<24 h) elevation in circulating cortisol levels (p < 0.0001). These increases did not vary in magnitude between the first ACTH challenge on day 1 and the last challenge on day 4. In contrast, aldosterone levels remained elevated above baseline for at least 24 hours after each ACTH injection (p < 0.001), and responses were greater on day 4 than day 1 (p < 0.01). Total triiodothyronine (tT3) levels were decreased on day 4 relative to day 1 (p < 0.01), while reverse triiodothyronine (rT3) concentrations increased relative to baseline on days 1 and 4 (p < 0.001) in response to ACTH, indicating a suppression of thyroid hormone secretion. There was no effect of ACTH on the sex steroid dehydroepiandrosterone (DHEA). These results suggest that elephant seals are able to mount adrenal responses to multiple ACTH challenges. However, repeated stress results in facilitation of aldosterone secretion and suppression of tT3, which may impact osmoregulation and metabolism. We propose that aldosterone and tT3 are informative additional indicators of repeated stress in marine mammals.

Spatial And Temporal Dynamics Of Batesian Mimicry Between Adelpha Californica And Limenitis Lorquini, Louis Albert Prusa

University of the Pacific Theses and Dissertations

Conspicuous coloration is one of the main ways that animals communicate. The use of eye-catching color patterns to warn predators of an unprofitable trait is referred to as aposematism. Once predators learn to recognize the color pattern, a new signaling niche becomes available where other species can share the same signal. This mimicry niche can involve a “hide in plain sight” strategy by mimicking or parasitizing this signal, with mimics lacking the defense and associated costs that make them unprofitable. This is termed Batesian mimicry, and it decreases predation by taking advantage of the memory and learning of the predator …

Unknown And Cryptic Diversity In The Adelpha Serpa-Group, Cassidi Rush

University of the Pacific Theses and Dissertations

The tropics are host to incredible insect diversity. One of the most charismatic groups that exhibit this diversity are the butterflies. Despite the tropical butterfly fauna being heavily researched, there remains much hidden diversity in the form of undescribed life histories and cryptic species. This is especially true among the species rich Nymphalidae, the brush-footed butterflies. Species in the genus Adelpha are known to be “the most trying taxonomically of all nymphalids” DeVries (1987), and as such are fruitful ground for uncovering unknown diversity. About half of the species within Adelpha have undescribed life histories, while A. serpa stands out …

Should I Stay Or Should I Go? Complex Environments Drive The Developmental Plasticity Of Flight Capacity And Flight-Related Tradeoffs, Jordan R. Glass

University of the Pacific Theses and Dissertations

Animals must balance multiple, fitness-related traits in environments that are complex and characterized by co-varying factors, such as co-variation in temperature and food availability. Thus, experiments manipulating multiple environmental factors provide valuable insight into the role of the environment in shaping not only important traits (e.g., dispersal capacity or reproduction), but also trait-trait interactions (e.g., trade-offs between traits). We employed a multi-factorial design to manipulate variation in temperature (constant 28°C vs. 28±5°C daily cycle) and food availability (unlimited vs. intermittent access) throughout development in the sand field cricket, Gryllus firmus. We found that fitness-related, life-history traits and trait trade-offs can …

Association Between Mechanics And Biology In Vascular Graft Remodeling, David Andrew Prim

Theses and Dissertations

Coronary artery bypass grafting (CABG) restores myocardial perfusion in patients with severe coronary artery disease by utilizing autografts – usually at least one of the internal thoracic artery (ITA), radial artery (RA), and great saphenous vein (GSV) – to bypass stenosed regions of coronary arteries. While decades of research and clinical improvements have made CABG an indispensable procedure, tens of thousands of grafts fail each year, which is due, at least in part, to an inability of the source vessels to adapt to the altered stimuli of the coronary circulation. In this dissertation, we first quantify and compare the mechanical …

Distribution And Stability Of The Lampricide 3-Trifluoromethyl-4-Nitrophenol (Tfm) In Non-Target Rainbow Trout (Oncorhynchus Mykiss) And White Sucker (Catostomus Commersonii), Darren Foubister

Theses and Dissertations (Comprehensive)

The lampricide 3-trifluoromethyl-4-nitrophenol (TFM) is applied to tributaries of the Great Lakes to control invasive sea lampreys (Petromyzon marinus). Although TFM is selectively toxic to larval sea lampreys, non-target mortality can occur during lampricide treatments. It is important to know whether or not TFM played a role in the death of these fishes, and the most direct means to do this is using forensic science principles. The objectives of this study were to: (i) determine the acute toxicity of TFM to the non-target fishes, rainbow trout (Oncorhynchus mykiss) and white sucker (Catostomus commersonii), and how the lampricide is …

What Race Terms Do: Du Bois, Biology, And Psychology On The Meanings Of “Race”, Glenn "Boomer" Mac Trujillo

Faculty and Staff Scholarship

This paper does two things. First, it interprets the work of W. E. B. Du Bois to reveal that the meanings of race terms are grounded by both a historical and an aspirational component. Race terms refer to a backward-looking component that traces the history of the group to its present time, as well as a forward-looking component that sets out values and goals for the group. Race terms thus refer to a complex cluster of concepts that involve biological, sociological, historical, moral, and political properties. Second, the paper defends W. E. B. Du Bois’s conservationist thesis about races, which …

Building Capacity For A Global Genome Editing Observatory: Conceptual Challenges, J. Benjamin Hurlbut, Sheila Jasanoff, Krishanu Saha, Aziza Ahmed, Anthony Appiah, Elizabeth Bartholet, Francoise Baylis, Gaymon Bennett, George Church, I. Glenn Cohen, George Daley, Kevin Finneran, William Hurlbut, Rudolf Jaenisch, Laurence Lwoff, John Paul Kimes, Peter Mills, Jacob Moses, Buhm Soon Park, Erik Parens, Rachel Salzman, Abha Saxena, Hilton Simmet, Tania Simoncelli, O. Carter Snead, Kaushik Sunder Rajan, Robert D. Truog, Patricia Williams, Christiane Woopen

Journal Articles

A new infrastructure is urgently needed at the global level to facilitate exchange on key issues concerning genome editing. We advocate the establishment of a global observatory to serve as a center for international, interdisciplinary, and cosmopolitan reflection.

A Comparison Of Two Methods Of Quantifying Mating Success In Low Density Gypsy Moth (Lymantria Dispar) Populations, Alexandra Barry, Hannah Byrne, Derek M. Johnson

Undergraduate Research Posters

The gypsy moth (Lymantria dispar) is a defoliating pest native to Europe and invasive to North America. The gypsy moth is subject to depressed mating success in low density populations, which may restrict spread of the forest pest. Research focusing on gypsy moth density as it relates to mating behavior has often used counts of males caught in pheromone-baited delta traps as a proxy to estimate the probability of female mating success. The purpose of this project was to determine whether pheromone trap counts provide accurate estimates of female mating success probability, by comparing data gathered from pheromone-baited …

The Effect Of Dna Methylation On Tp73 Expression In Tumorgenesis, Nujuma A. Moussa

Undergraduate Research Posters

Abstract: The Effect of DNA Methylation on TP73 Expression in Tumorgenesis

Nujuma Moussa, Zhixing Yao, Zaki A. Sherif

Department of Biochemistry & Molecular Biology, Howard University College of Medicine

TP73 is a member of the TP53 family of proteins that acts as a transcription factor to help regulate cellular distress. This tumor protein may play a dual role as a tumor suppressor and tumor promoter. The TP73 gene is mapped to chromosome 1p36, a frequently deleted region in neuroblastoma and other types of tumors. While mutations in the TP53 gene are commonly known to cause noxious cancers, 30% of cancers …

Effect Of Energy Metabolism On Nf-Kb Activity In Ovarian Cancer, Simren K. Bagri

Undergraduate Research Posters

NF-kB is a transcription factor involved in cancer cell growth and survival. The activation of NF-kB can be assessed by monitoring phosphorylation of RelA p65 at Ser-536, which is a surrogate of the NF-kB transcription factor activation. The objective of this study was to determine if the loss of ATP leads to NF-kB deficiency and thus, apoptotic cell death of “bad” cells in ovarian cancer cells. The independent variables were metformin (Met), an anti-diabetic medicine, another compound MinB functionally similar to Met and a glucose transporter inhibitor BAY-876. The dependent variables were the resulting effect of Met and MinB on …

Synopsis Of The Tribe Zolini In New Zealand (Coleoptera: Carabidae), André Larochelle, Marie-Claude Larivière

Insecta Mundi

The tribe Zolini (Carabidae: Trechinae) is revised for New Zealand. Two subtribes, five genera, and fortyeight species are recognized. The presence of the subtribe Merizodina is confirmed for New Zealand; it includes three genera (Maungazolus n. gen., Pseudoopterus Csiki, 1928, and Synteratus Broun, 1909). The subtribe Zolina contains two genera (Oopterus Guérin-Méneville, 1841 and Zolus Sharp, 1886).

One genus and twenty-five species are described as new: Maungazolus n. gen.; Maungazolus acutus n. sp., Maungazolus priestleyensis n. sp., Maungazolus ranatungae n. sp., Maungazolus septempunctatus n. sp., Maungazolus tararuaensis n. sp., Oopterus anglemensis n. sp., Oopterus arthurensis n. sp., Oopterus …

Unseen Science: Modern Discoveries Too Far Away Or Tiny For Human Eyes, Lucy Huang

Capstones

As science has progressed, scientists have realized that evidence goes beyond the realms of physical sight. Whether it is too small or difficult to find, scientists have developed different ways to get around this problem. We see this in cancer genomics and in extrasolar planetary research. Scientists use what they know and what they measure to validate their work.

https://lucy-huang-9tge.squarespace.com/

Literary Digest: Cannibal Poetry And Biology, Alicia Anzaldo, Claire Boeck, Sara Schupack

The Transdisciplinary STEAM+ Journal

A humanities professor and a biology professor at Wilbur Wright College collaborated to create a lesson on human digestion and poetry, enriching the humanities course theme on cannibalism. This article describes the lesson plan, examples of student work, and faculty reflections.

Phylogenetics Of Euthamia (Asteraceae: Astereae) And Asteromyia Euthamiae (Cecidomyiidae: Alycaulini), Marisa Szubryt

Honors Theses

No abstract provided.

Community Structure And Zonation Of Antarctic Benthic Invertebrates: Using A Remotely Operated Vehicle Under Ice To Define Biological Patterns, Dorota Szuta

Master's Theses

The Ross Sea, Antarctica is a deep bay of the Southern Ocean that exhibits seasonal sea ice and is adjacent to a permanent ice shelf overlying seawater. In 2008 and 2009, imagery of the seafloor under the McMurdo Ice Shelf and under the seasonal ice in the Ross Sea was collected via remotely operated vehicle (ROV) at depths to 300 m. Distinct differences in Antarctic benthic communities were observed over multiple environmental gradients. Species abundance typically exhibited a unimodal distribution with depth with mid-depth peaks, reflecting a food limitation at the deep end and potentially ice disturbance on the shallow …

Gardner-Webb Alumnus Recognized For Undergraduate Research, Office Of University Communications

Gardner-Webb NewsCenter Archive

The summer before Christopher Lile graduated from Gardner-Webb University, he spent five weeks studying small mammals on the Broad River Greenway and the surrounding area. The research experience helped him secure internships in Indiana and Madagascar. Recently, the Waynesville, N.C., native received another honor for his work.