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Biol 321-001, 003: Comparative Vertebrate Anatomy, Brooke Flammang

Biology Syllabi

No abstract provided.

Biol 338-001: Ecology Of The Dining Hall, Maria Stanko

Biology Syllabi

No abstract provided.

Diversity Of Bees In Trees And Their Foraging Preferences On An Urban College Campus, Aidan Castricone

Biology Student Scholarship

Pollinators collect nutrients from blooming flowers; pollen provides proteins and fats, nectar provides carbohydrates. The few plants that bloom during early Spring are trees such as crabapple (Malus sp). Current research however, mainly focuses on pollinators that forage on the ground and overlooks pollinators foraging in the canopy of trees. Past research showed increased generalization of pollen foraging in bees as seasons move from spring to summer. Here I identified which bee species forage in the canopy on Providence College campus and will analyze the pollen collected using microscopy. This data can inform more specific research on diet breadth, …

Targeting Energy Intake And Circadian Biology To Engage Mechanisms Of Aging In Older Adults With Obesity: Calorie Restriction And Time-Restricted Eating, Satchidananda Panda, Geraldine Maier, Dennis T Villareal

Faculty, Staff and Students Publications

With the rise in obesity across age groups, it has been a hindrance to engaging in physical activity and mobility in older adults. Daily calorie restriction (CR) up to 25% has been the cornerstone of obesity management even though the safety in older adults remains incompletely understood. Although some adults can follow CR with clinically significant weight loss and improved health metrics, CR faces 2 obstacles-many fail to adopt CR and even among those who can adopt it short term, long-term compliance can be difficult. Furthermore, there is a continuing debate about the net benefits of CR-induced weight loss in …

Exploring The Intersection Of Biology And Design For Product Innovations, Ajay P. Malshe, Salil Bapat, Kamlakar Rajurkar, Ang Ang, Jean-Marc Linares

Department of Mechanical and Materials Engineering: Faculty Publications

Design, development, productization, and applications of advanced product concepts are pressing for higher multifunctionality, resilience, and maximization of available resources equitably to meet the growing and continuing demands of global customers. These demands have further accelerated during the recent COVID- 19 pandemic and are continuing to be a challenge. Engineering designs are one of the most effective ways to endow products with functions, resilience, and sustainability. Biology, through millions of years of evolution, has met these acute requirements under severe resource and environmental constraints. As the manufacturing of products is reaching the fundamental limits of raw materials, labor, and resource …

Investigating The Nectar Preferences Of Bumblebees While Foraging: Are Total Responses A Good Metric?, Alexander Entwistle, Becky Hansis-O'Neill, Aimee Dunlap Dr

Undergraduate Research Symposium

The declining population of bumblebees worldwide poses an unmistakable threat to ecological systems and biodiversity. Therefore, a deep understanding of the factors at play when bees are foraging is crucial to conservation efforts. This research aims to explore the energy that foraging bumblebees are willing to expend at a known food source after the food has stopped, and if these responses reveal sugar concentration preferences. In this experiment a novel approach was used, adapted from psychology research on addiction, to measure bee’s preferences for different concentration of sugar-water (nectar). First, how many rewards the bees earned if they were given …

Automated Classification Of Pectinodon Bakkeri Teeth Images Using Machine Learning, Jacob A. Bahn

MS in Computer Science Project Reports

Microfossil dinosaur teeth are studied by paleontologists in order to better under- stand dinosaurs. Currently, tooth classification is a long, manual, error-ridden process. Deep learning offers a solution that allows for an automated way of classifying images of these microfossil teeth. In this thesis, we aimed to use deep learning in order to develop an automated approach for classifying images of Pectinodon bakkeri teeth. The proposed model was trained using a custom topology and it classified the images based on clusters created via K-Means. The model had an accuracy of 71%, a precision of 71%, a recall of 70.5%, and …

Understanding The Expression And Role Of Pros-1 In The Male Gonad Of C. Elegans, Jack Bozik

Undergraduate Theses

The gene pros-1 is a transcription factor that is highly expressed within neuronal sheath cells, glial cells, and excretory canal cells. pros-1 plays a role in cell determination of those cell types in the nematode C. elegans, which promotes organismal development. But the degree to which pros-1 presence is important is still not fully understood, because there are many genes involved in development that when mutated or damaged can result in unexpected phenotypes or even total loss of function to a certain developmental mechanism. What makes pros-1 valuable to research is that it is a functional homologue to a …

See You Later Alligator: Forelimb And Wrist Of Alligators Walking The Treadmill, Erin Trammell, Inthavha Singharaj, Sasha Rudich

Biology Student Scholarship

Erin Trammell ’23, Major: Biology

Inthavha Singharaj ’23, Major: Biology

Sasha Rudich ’23, Major: Biology, Minors: Women and Gender Studies

Faculty Mentor: Dr. Daivd Baier, Biology

We used XROMM, which combines biplanar X-ray video and digital bone models, to measure how the alligator skeleton moves during high walks on a treadmill. The crocodilian high walk and wrist structure are unique compared to other reptiles who walk with a sprawled limb posture. Here, we describe how bones of the forearm, wrist, and hand coordinate during alligator strides. We find that elbow is more than just a simple hinge, the forearm bones …

Genetic Disruption Of Metabolic Balance In Mouse Cerebellar Neurons Causes Deficits In The Postnatal Development Of Their Dendritic Tree And Mouse Motor Skills, Hayden Lens, Mary Boghos

Biology Student Scholarship

Hayden Lens ’23, Major: Biology

Mary Boghos ’23, Major: Biology

Faculty Mentor: Dr. Ileana Soto Reyes, Biology

The Npc1nmf164 mutant mouse is an animal model for the human disease Niemann-Pick type C (NPC). NPC is a lysosomal storage disease that is acquired by autosomal recessive inheritance. It is mostly caused by mutations in NPC1, a protein that transports cholesterol out of the lysosomes, therefore abnormal accumulation of cholesterol in lysosomes is a hallmark of NPC. Cerebellar Purkinje cells (PCs) are severely affected by NPC, in fact, PCs degenerate first and to a larger extent at childhood stages. Therefore, we have …

Circadian Rhythm Effects Of Social Jetlag And Exercise On Stress Levels And Weight Change Of Fischer Rats, Brian Schwalm

Biology Student Scholarship

Brian Schwalm ’23
Major: Biology
Minor: Economics
Faculty Mentor: Dr. Pamela Snodgrass, Biology

Circadian Rhythms Effect On Brain Metabolism In Mutant Flies, Olivia Kozub

Biology Student Scholarship

Olivia Kozub ’23
Major: Biology
Faculty Mentor: Dr. Pamela Snodgrass, Biology

All organisms have an internal clock that drives physiological processes known as circadian rhythms. Being able to predict the environment and prepare for it, rather than simply react, is so critical to survival that this ability has been conserved from single cell organisms all the way to humans. These rhythms can be measured at the gene level, the protein level, the cellular level, the tissue level, all the way to oscillations in behavior. Measuring the metabolic activity of normal fly brains at different times of day will chart the …

Comparison Of Globalfiler Pcr Amplification Inhibition Due To Humic Acid And Canine Dna, Mckinzie Bundy

Honors Projects

To obtain a DNA profile from a crime scene sample, the DNA must undergo amplification through the Polymerase Chain Reaction (PCR). The PCR process can be inhibited by factors that increase DNase I activity or by factors that interfere with Taq polymerase binding to the DNA. This study compares inhibition to the PCR process caused by dog DNA with inhibition caused by humic acid. The GlobalFiler PCR Amplification Kit was tested using mixtures of dog DNA and human control DNA and mixtures of humic acid and human control DNA. The profiles obtained from these mixtures were then analyzed for instances …

Lesson Plans In Astronomy, Ecology And Biology, Admin Stem For Success

STEM for Success Showcase

This document contains various lesson plan ideas for concepts within the fields of biology, ecology, astronomy, and geology.

Locomotor Biomechanics In Stream Gobies, Rhinogobius Sp.: Functional Performance Of Waterfall-Climbing Behavior, Ernest W. Murphy

Student Scholar Showcase

Gobiidae is the taxonomic classification of a large fish family comprising over 2,000 species. A few goby species have the unique ability of scaling waterfalls using pelvic fins that are fused into a suction disc (pelvic sucker) located on the ventral side of the body, aiding them in upstream migration to freshwater feeding and reproduction locations. This study aimed to investigate the locomotor biomechanics of Rhinogobius goby fish due to the lack of literature in the area. In particular, climbing performance variables (pressure differential, force, endurance, and kinematics of attachment), pelvic sucker fatigability, and ontogenetic patterns of physical development and …

Apoptosis Recognition Receptors Regulate Skin Tissue Repair In Mice, Olivia Justynski

Yale Graduate School of Arts and Sciences Dissertations

The skin is an essential barrier against the outside world, and must withstand constant exposure to damage from the environment. When this barrier is broken, it must be repaired quickly and effectively in order to prevent infection and restore function. The skin’s ability to heal wounds is vital for human health, and insufficient wound treatment is a major clinical problem, contributing to decreased quality of life and increased healthcare costs for many patients due to chronic or non-healing wounds. The complex process of wound healing involves the coordination of many cell types and signals, which were here investigated using single-cell …

Environmental Exposures From The Local To The Global: A Comparison Of The Experiences And Consequences Of Exposure Among The Qom Of Formosa, Argentina, And Residents Of New Haven, Connecticut, Carlye Chaney

Yale Graduate School of Arts and Sciences Dissertations

Exposure to endocrine disrupting chemicals and other environmental contaminants is globally ubiquitous and can have adverse consequences on health throughout the lifespan. In this project, I investigated the experiences and consequences of environmental contaminant exposure for maternal and infant health in two places that differ environmentally, politically, and socioeconomically –Namqom in Formosa, Argentina, and New Haven, Connecticut. Specifically, I hypothesized that environmental contaminant exposure influences human well-being and physiology, as assessed from the human milk and urine metabolome, through changes in the hypothalamic-pituitary-gonadal (HPG) axis in both infancy and adulthood.I first investigated the local context, both historical and present, that …

Delineating Novel Checkpoints In Metabolic Syndromes, Jonathan Sun

Yale Graduate School of Arts and Sciences Dissertations

The global rise in obesity and overnutrition has rapidly increased diagnosedmetabolic syndromes, including fatty liver disease and hypercholesterolemia. This growing burden of metabolic diseases elicits an immense health and economic burden on society, as metabolic syndromes are significant risk factors for co-morbidities such as cancer and heart failures, leading to an attributable cost of $147 billion in US healthcare spending. Given this, it is of high importance to uncover the dynamic metabolic programs that drive the progression of these metabolic syndromes toward end-stage diseases. Metabolic rewiring during overnutrition can regulate the expression of feedback loops, referred hereupon as metabolic checkpoints, …

Humanity's Fate: An Analysis Of Speculative Human Evolution In Literary Fiction, Celeste T. Johnson

Senior Theses

Speculative human evolution is a literature subgenre of science fiction that explores the potential future of humanity and descendant species. Little academic research has been done to evaluate the scientific accuracy of works of this genre or assess the relationship between the themes presented in the works and our current world. Future human species and their evolutionary journeys were assessed for scientific possibility through comparison with current research in fields such as anthropology, evolutionary biology, and sociology. It was found that the species depicted in works of speculative human evolution were largely based in scientific accuracy and could possibly exist …

Life Line Spring 2023, Otterbein Biology And Earth Science Department

Life Line - The Biology Department Newsletter

In this Issue:

Feathered Friends Living on Campus; The Hidden Mussels of the Olentangy River; Early Assurance Program Students Graduate from HCOM; Students Present at American Society for Microbiology Microbe 2022 Meeting; Environmental Science Upgrades Its Remote Monitoring Capabilities; Speed!; UK Students Visit Local Attractions; That's a Lottl Axolotls.

The Free Press Vol. 54, March 03-27-2023, Kelly Ledsworth

Free Press, The

USM Department of Theatre runs Into the Woods--What's Going On In Pop Culture?--Perspectives From Biology--Student Senate Meetings--The Oakhurst Campus Food Pantry--Historic wins for an underrepresented story

Can Tilt Be Used To Teach Study Tactics? A Case Study In A Biology Classroom, Anne Jacobs

Perspectives In Learning

Recently, there has been a movement encouraging instructors in higher education to use the Transparency in Teaching and Learning (TILT) framework when designing assignments. This framework helps instructors clarify their expectations and evaluation criteria. Making assignments more transparent may result in greater student success. However, it is less clear how this framework can be applied to classes that use exams as a main method of assessing student learning. One option might be to use a TILTed assignment to introduce students to learning tools to improve their studying. I did this by giving students in an introductory biology class an assignment …

Friend Or Foe? The Role Of Transforming Growth Factor-Β (Tgfβ) Signaling In Calcineurin Inhibitor-Induced Renal Damage, Adaku Uwe

Browse all Theses and Dissertations

With its incorporation into clinical practice in the early 1980s, the class of pharmacological agents known as calcineurin inhibitors (CNIs) quickly became the cornerstone of immunosuppressive therapy post-organ transplantation. However, its use is limited by irreversible kidney damage in the form of renal fibrosis. The molecular mechanism by which CNIs induce renal fibrosis remains to be better understood, and to date, there are no specific therapeutic strategies to mitigate this damage. This dilemma presents a critical need to explain mechanisms by which CNIs cause renal damage. Kidneys of patients on chronic CNI therapy show increased expression of the proinflammatory cytokine …

Characterization Of The Mycobiome Of Rafflesia Seeds: Their Potential Ecological Roles And Applications In Rafflesia Propagation And Conservation, Feruza Karnitskiy

Selected Full-Text Master Theses 2021-

The plant microbiome exerts a profound influence on plant health, growth, and life cycle. This ecosystem comprises diverse microbial communities, such as symbiotic endophytes, mycorrhizal fungi, epiphytes, saprophytes, rhizobia, and pathogens, which inhabit parasitic and non-parasitic plants. Rafflesia speciosa, a holoparasitic plant, is a unique and endangered species that depends on its host Tetrastigma spp. for survival. In this study, fungal metagenomics was conducted to characterize the fungal community—the mycobiome within Rafflesia seeds, and a phylogeny was reconstructed. The ecophysiological characteristics of these fungal genera were also researched in the literature, and their primary ecological trait, whether plant mutualist, saprotroph, …

Exploring How Advanced-Level Biology Teachers Integrate Ict In Teaching And Learning,A Case Of One Public Secondary School In Songwe Region, Tanzania, Rose John Shiyo

Master of Education

Information and Communications Technology (ICT) has pedagogical advantages that can help teachers design, teach, and assess biology lessons. The aim of this study was to explore how teachers integrate ICT during the teaching of Biology at A-level classes in Songwe region, Southern Tanzania. The research site of this study is one public advanced-level secondary school in the Mbozi district. The purposive sampling technique was used to get the sample comprising two, A-level biology teachers, one ICT technician, one laboratory technician, and six students from A-level classes who were persuing a science subject combination known as CBG (Chemistry Biology Geography). This …

Environmental Toxicants And Human B Cells: Insights From Crispr Editing And Genomic Sequencing, Clayton Allex-Buckner

Browse all Theses and Dissertations

The human immunoglobulin heavy chain gene locus (IGH) has two 3 prime regulatory regions (3’IGHRR), each containing three enhancers (hs3, hs1.2, hs4). In animal models, the 3’IghRR regulates IgH expression and class switch recombination (CSR) to different Ig isotypes. The 3’IGHRR hs1.2 enhancer in humans is polymorphic in that an invariant sequence (IS) can be repeated one to four times in tandem. The hs1.2 polymorphism is of interest due to its association with several human autoimmune disorders and its potential sensitivity to exogenous substances such as 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD or dioxin). In mouse models, TCDD inhibits the hs1.2 enhancer and 3’IghRR …

Biomechanics Of Mantis Prey Capture, Danielle S. Taylor

Honors Theses

Mantis species have a variety of different morphologies, so do the extreme forms of mantis limbs trade prey catching capability for camouflage? We hypothesize that some extreme forms of mantis limbs that are associated with cryptic species may be associated with a tradeoff of the capability of those limbs. Previous research has developed 2D morphologies of several hundred species of mantises. We are creating a 3D morphology by using micro dissection, micro CT imaging to construct our 3D biomechanical model. We found the attachment points of the ligaments and muscles from a Tenodera forearm and have constructed a 2D biomechanical …

High School Teachers’ Experiences And Perceptions Facilitating Student Discourse And Collaborative Structures For English Language Learners In Biology, Chrissy Ann Brouwer

Walden Dissertations and Doctoral Studies

The problem that was addressed in this study was that the academic needs of English Language Learners (ELLs) were not being met in biology classes in high schools in the local district because teachers were not consistently facilitating instruction using the required strategies of student discourse and collaborative structures. The purpose of this qualitative study was to explore teachers’ successes, challenges, and need for supports when using the required strategies with their ELLs. Knowles’ theory of andragogy and Shulman’s theory of pedagogical content knowledge guided this study examining how the adults’ learning of the required strategies impacted their ability to …

Utilizing Markov Chains To Estimate Allele Progression Through Generations, Ronit Gandhi

Honors Program: Senior Projects (Public)

All populations display patterns in allele frequencies over time. Some alleles cease to exist, while some grow to become the norm. These frequencies can shift or stay constant based on the conditions the population lives in. If in Hardy-Weinberg equilibrium, the allele frequencies stay constant. Most populations, however, have bias from environmental factors, sexual preferences, other organisms, etc. We propose a stochastic Markov chain model to study allele progression across generations. In such a model, the allele frequencies in the next generation depend only on the frequencies in the current one.

We use this model to track a recessive allele …

High School Teachers’ Experiences And Perceptions Facilitating Student Discourse And Collaborative Structures For English Language Learners In Biology, Chrissy Ann Brouwer

Walden Dissertations and Doctoral Studies

The problem that was addressed in this study was that the academic needs of English Language Learners (ELLs) were not being met in biology classes in high schools in the local district because teachers were not consistently facilitating instruction using the required strategies of student discourse and collaborative structures. The purpose of this qualitative study was to explore teachers’ successes, challenges, and need for supports when using the required strategies with their ELLs. Knowles’ theory of andragogy and Shulman’s theory of pedagogical content knowledge guided this study examining how the adults’ learning of the required strategies impacted their ability to …