Digital Commons Network^™

Clustering And Classification Methods For Forensic Science Applications, Slun Booppasiri

Graduate Thesis and Dissertation post-2024

Finite mixture models have been widely used to cluster data consisting of homogeneous subpopulations. In forensic palynology, pollen is used as a proxy to link individuals or items to a crime scene. Mixtures of pollen data-including willow and mustard and blank samples-were analyzed using flow cytometry. Willow and mustard clusters tend to have multivariate normal distributions, while a background cluster has multivariate non-normal distribution. We propose a finite mixture model capable of handling the mixtures of pollen in terms of univariate and multivariate distribution. The proposed methods are applied in simulated and mixture of pollen datasets.

Finite mixture models typically …

Robust Multiple Change Point Detection For Streaming Data, Randyll Pandohie

Graduate Thesis and Dissertation post-2024

The growing prevalence of high-frequency, high-dimensional data streams in domains such as finance, cybersecurity, and industrial monitoring has intensified the demand for real-time multiple change point detection methods. These methods are expected to identify distributional shifts as they occur while also determining the number and locations of change points—even in the presence of noise, outliers, and limited labeled data. Traditional batch-based approaches and many existing machine learning models fall short in streaming contexts due to their reliance on static datasets and sensitivity to contamination.

This thesis proposes a unified framework for robust multiple change point detection in streaming environments. The …

Leveraging Snomed Ct For Patient Cohort Identification Over Heterogeneous Ehr Data, Xubing Hao, Yan Huang, Licong Cui, Xiaojin Li

Faculty, Staff and Student Publications

SNOMED CT is extensively employed to standardize data across diverse patient datasets and support cohort identification, with studies revealing its benefits and challenges. In this work, we developed a SNOMED CT-driven cohort query system over a heterogeneous Optum® de-identified COVID-19 Electronic Health Record dataset leveraging concept mappings between ICD-9-CM/ICD-10-CM and SNOMED CT. We evaluated the benefits and challenges of using SNOMED CT to perform cohort queries based on both query code sets and actual patients retrieved from the database, leveraging the original ICD-9-CM and ICD-10-CM as baselines. Manual review of 80 random cases revealed 65 cases containing 148 true positive …

Indigenous Vs Western Land Management Strategies In The Pacific Islands, Catherine Farley

Pomona Senior Theses

This paper explores the critical role of sustainable land management in the Pacific Islands, focusing on its intersection with climate change mitigation, biodiversity conservation, and cultural preservation. Indigenous land management practices, shaped over generations, are integral in maintaining ecosystem services such as carbon sequestration, soil fertility, clean water, and coastal protection. These methods not only enhance resilience to climate change but also preserve species crucial for food security and cultural practices. By comparing traditional and Western land management strategies, this research suggests ways to integrate modern technology with indigenous knowledge to improve adaptive capacity. The paper addresses the gap in …

Demystifying Misconceptions In Introductory Undergraduate Chemistry Education With 3d Printed Molecular Orbitals, Hiwot Endeshaw, Daniel J. O'Leary

Pomona Senior Theses

Spatial abilities are invaluable skills for the science, technology, engineering, and mathematics (STEM) subjects. However, women, people from low socioeconomic backgrounds, and ethnic minorities are more likely to have less developed spatial abilities, which is one of the many contributing factors for the lack of diversity in STEM subjects like chemistry. Teaching spatial skills to undergraduate chemistry students may address this issue and help increase the diversity of students who go on to continue their education in the subject. 3D printing technology in higher education has exploded in recent years, presenting a unique opportunity to teach “hard to grasp” concepts …

Optimizing And Scaling Up Tcfh–Nmi Pyrrole Acylation For Organic Syntheses, Grant H. Miller

Pomona Senior Theses

Traditional ketone synthesis often depends on toxic reagents and hazardous solvents, which limits its scalability and environmental compatibility. The TCFH–NMI method has shown strong potential for amide, ester, and thioester formation, but its use in ketone synthesis has only been recently described, and only on small scales. This thesis addresses that gap by optimizing a scalable synthesis of 2-(monomethyl succinyl)-3,5-dimethylpyrrole using monomethyl succinate and 2,4-dimethylpyrrole as model substrates. Key reaction parameters were systematically refined to improve yield, reproducibility, and sustainability. The final protocol avoids chromatography, operates at room temperature, and consistently delivers high yields. These features position it as a …

Swimming In Sh*T: Quantifying Lagoon Flushing Impacts On Fecal Indicator Bacteria In Surf Zones Of Three Beaches On The East End Of Long Island, Ny, Brody C. Eggert

Pomona Senior Theses

This thesis investigates how lagoon flushing influences fecal indicator bacteria (FIB) concentrations—specifically enterococcus bacteria—in the surf zones of East Hampton and Southampton, New York. Focusing on the coastal lagoons of Georgica Pond, Sagg Pond, and Mecox Bay, the study analyzes how episodic inlet openings and environmental conditions affect enterococcus levels at adjacent recreational beaches. Using over 700 observations from the Surfrider Foundation’s Blue Water Task Force (BWTF) database, I construct a series of statistical models ranging from ordinary least squares to mixed effects frameworks; this thesis shows my process in developing this model. My analysis reveals that open inlets between …

“Nice To See You”: Addressing Plant Awareness Disparity With Locally Specific Ecological And Cultural Plant Education, Cecilia Muecke

Pomona Senior Theses

Plants form the basis of life on Earth. However, due to the phenomenon of plant awareness disparity, a self-perpetuating cycle whereby plants are overlooked on an individual and global level ensues. Lack of plant awareness leads to a lessened emphasis on plants in sustainability and conservation as well as biology education, resulting in negative impacts on biodiversity and food security. The severity of plant awareness disparity is dependent on cultural context, and Indigenous and/or traditional societies are less likely to experience plant awareness disparity because of they are typically more connected to plants for their everyday needs. Native plants are …

Rwanda's Natural Remedies: A Fresh Look At The Fight Against Malaria, Leandre Nsabimana Ndisanze

Pomona Senior Theses

Malaria remains one of the most devastating parasitic diseases globally, disproportionately affecting sub-Saharan Africa, where Rwanda continues to face high transmission rates and rising resistance to conventional interventions. Despite decades of control efforts, the emergence of drug-resistant Plasmodium falciparum and insecticide-resistant Anopheles mosquitoes threatens to reverse recent gains. This research responds to the urgent need for sustainable and culturally relevant alternatives by exploring the therapeutic potential of Rwandan traditional medicinal plants. These indigenous remedies, long used by local healers, offer an underexplored reservoir of bioactive compounds that may provide the basis for novel antimalarial drugs.

The central hypothesis of this …

Art As Witness: Carrying Christian Iconographies In The Works Of Henry Ossawa Tanner During The Gilded Age To Contemporary Autobiographical Testimonial Art, Ziona King

Pomona Senior Theses

Culminated in a solo exhibition of three works titled the prodigal daughter and The Great High Priest, Baptism, and The Lord of Hosts, this research explores the implications of the Christian methodologies and iconographies in the works of Henry Ossawa Tanner to influence testimonial artwork containing personal Christian iconographies of water baptism, spiritual encounter in everyday life, the lion of Judah, bowls, and more interpretive motifs.

Identifying Acute Myeloid Leukemia Subtypes Based On Pathway Enrichment, Ling Zhong, Jiangti Luo, Junze Dong, Xiang Yang, Xiaosheng Wang

Faculty, Staff and Student Publications

Acute myeloid leukemia (AML) is the most common type of acute leukemia in adults and the second most common in children. Despite the introduction of targeted therapies, AML survival rates have shown limited improvement, particularly among older patients. This study explored personalized treatment strategies for AML by proposing a novel subtyping method. Through unsupervised clustering based on the enrichment scores of 14 pathways related to metabolism, immunity, DNA repair, and oncogenic signaling, we identified three AML subtypes: DNA repair (DR), immune-enriched (ImE), and immune-deprived (ImD), consistent in four independent datasets. DR is marked by high expression of DNA repair and …

Samuel Štefan Osuský’S Critique Of Church And Society In The Face Of Totalitarianism, Michal Valčo, Katarína Valčová

Occasional Papers on Religion in Eastern Europe

This paper provides a systematic review analysis of the relevant works of Slovak philosopher and theologian Samuel Štefan Osuský (1888-1975), focusing on his critical perspective concerning the responses of the Church (mainly the Evangelical Lutheran Church of Augsburg Confession in Slovakia) and society to the ideological and political dangers of fascism and Nazism in 20th-century Central Europe. Drawing on his major writings, including his prophetic 1937 lecture "Filozofia boľševizmu, fašizmu a hitlerizmu" [The Philosophy of Bolshevism, Fascism, and Hitlerism] and the courageous 1942 "Pastiersky list k židovskej otázke" [Pastoral Letter on the Jewish Question], we explore Osuský’s diagnosis of institutional …

Population Dynamics Of White-Tailed Deer In A Multi-Predator, Multi-Prey Context In Northern Idaho, Elizabeth J. Painter-Flores

Graduate Student Theses, Dissertations, & Professional Papers

My dissertation was motivated by a fundamental management question. If a manager wants to increase the population of species A, how will it affect ungulate species B and C, and predator species D and E, and which populations can be managed to support species A’s success? This question is pertinent for both predators and prey, and in northern Idaho, harvest is used to not only manage populations in an ecological sense but also as a service to the public in the form of hunting opportunities. Understanding these interactions will benefit managers in their decision-making process and ensure the long-term stability …

Climate Goodbyes: Reporting On Loss, Change And The Human Response In Montana, Madeline Jorden

Graduate Student Theses, Dissertations, & Professional Papers

This portfolio explores how climate-driven environmental change intersects with long-standing tensions over natural resource management, tribal sovereignty, and rural identity in Montana. It consists of three stories: a historically low water year at Flathead Lake that intensified disputes between tribal dam operators and non-tribal waterfront homeowners; the first confirmed presence of invasive smallmouth bass in the Bitterroot River, signaling warming stream conditions and ecological disruption; and a political narrative from Colstrip, where coal industry workers cling to promises of revival amid economic and regulatory decline. Each piece illustrates how climate change acts not only as an environmental force but also …

Space Use, Habitat Selection, And Flight Behavior Of Eagles Across Northwestern North America, Stephen Bernard Lewis

Graduate Student Theses, Dissertations, & Professional Papers

Understanding how behavioral strategies shape movement, space use, and risk exposure is essential for conserving long-lived raptors. In this dissertation, I use high-resolution GPS telemetry from bald eagles (Haliaeetus leucocephalus) and golden eagles (Aquila chrysaetos) to examine how behavioral state, environmental context, and temporal dynamics structure raptor ecology across Alaska, British Columbia, and the western United States.

Chapter 1 used random forest classification of movement data from 43 bald eagles and 94 golden eagles to identify territorial, nesting, and floater seasons with high accuracy. Floaters comprised roughly one-third of all seasons in both species, and many individuals exhibited consistent state-specific …

Ecology-Driven Machine Learning For Predicting Risk Of Spread For Aquatic Invasive Species., Leif Eric Howard

Graduate Student Theses, Dissertations, & Professional Papers

Effective management of aquatic invasive species (AIS) requires predictive tools that leverage environmental and ecological data to forecast spread into uninvaded areas. However, species distribution models (SDMs) often struggle to capture key invasion processes such as dispersal, propagule pressure, and biotic interactions. This thesis integrates ecological, dispersal, and environmental predictors within a machine learning framework to enhance AIS risk prediction and model transferability across space.

In Chapter 2, 61 novel predictors were developed for 2,203 Minnesota lakes to model zebra mussel (Dreissena polymorpha) occurrence, incorporating variables related to propagule pressure (e.g., boat visitation), community composition (e.g., fish species …

Budget Recommendations Fy2025-26, Tennessee. Commission On Children And Youth.

Annual Report

No abstract provided.

Florida Scrub Is Nuts (And Drupes): Fruit Production And Consumption In Florida’S Fire-Prone, Xeric Uplands, Warren G. Abrahamson Ii

Faculty Journal Articles

This is a story about how plant size, fire, and climate affect fruit and nut production (i.e., mast) in Florida’s fire-prone, xeric uplands and the importance of mast as food for wildlife. To set the stage, let’s first explore the primary mast-producing plants of Florida’s xeric uplands: oaks, hickory, and palmettos.

Mathematical Modeling Of Cancer Tumor Evolution, Belgacem Al-Azem

CGU Theses & Dissertations

Several mathematical models of cancer tumor evolution are presented. The aim of this endeavor is to write a thesis that fosters numerical and analytical understanding of certain mathematical models in the area of oncology as well as to offer potential predictive tools of therapeutic and clinical applicability. In this work, we give a panoramic view of the cancer phenotype, for to understand cancer, we need to "see" its biophysics. Indeed, the discovery of oncogenes led to the thinking that cancer tumor is perhaps a genetic disease. But the role of angiogenesis and other microenvironment-related discoveries (such as the role of …

Geometric Dimensionality Reduction, Daniel Livschitz

CGU Theses & Dissertations

The emergence of AI models developed through computationally intensive training has resulted in a surge of research into dimensionality reduction techniques that spans across numerous mathematical disciplines. In this thesis we establish Geometric Dimensionality Reduction, a non-linear data compression technique that utilizes low dimensional manifolds embedded in dimensional spaces to form composite contraction-and-projection maps. Geometric Dimensionality Reduction is predominantly demonstrated through a novel algorithm entitled LGE (Livschitz-Gu-Eyunni) that utilizes Multicomplex rotation groups and polyspherical coordinates to define a single tuneable logarithmic map from ℝ 2푛 to ℝ 푛+1 with deterministic time complexity, geometric tunability, and semi-reversibility. Significant breakthroughs in the …

Gene Expression Changes In Human Cerebral Arteries Following Hemoglobin Exposure: Implications For Vascular Responses In Sah, Chathathayil M Shafeeque, Arif O Harmanci, Sithara Thomas, Ari C Dienel, Devin W Mcbride, Kumar T Peeyush, Spiros L Blackburn

Faculty, Staff and Student Publications

Subarachnoid hemorrhage (SAH), characterized by the presence of hemoglobin (Hb) in the subarachnoid space, significantly impacts cerebral vessels, leading to various pathological outcomes. The toxicity of cell-free Hb released from erythrocytes and its metabolites after SAH causes vasoconstriction and neuronal damage, and correlates with delayed ischemic neurological deficits (DIND). While animal models have provided substantial and invaluable data in the research of aneurysmal SAH, the specific effects of subarachnoid blood on cerebral arteries remain greatly understudied. Here, we describe the changes in the genetic profile of human cerebral arteries exposed to free Hb for 48 h. We performed an ex …

The Effects Of Chronic Sleep Deprivation On Visuomotor Performance Using Electroencephalographic Measurement, Jaxon Duane Erie

Theses and Dissertations

The present study investigated the impact of acute and chronic sleep deprivation on visuomotor performance using both electroencephalographic (EEG) and behavioral measures (Senaptec Sensory Station) in a sample of 43 college students aged 18 to 27. Participants were assigned to low or high sleep conditions based on Chronic Sleep Reduction Questionnaire (CSRQ) scores, while acute sleep deprivation was assessed via the Karolinska Sleepiness Scale (KSS). Heart rate variability (HRV) was recorded to support condition placement, but comparisons revealed no significant differences between groups. No significant differences were found in visuomotor control or eye-quickness assessments. However, visual clarity was significantly better …

The Ability Of The Millon Pre-Adolescent Clinical Inventory (M-Paci) To Distinguish Between Adhd And Non-Adhd Clinical Groups, Michael Jowkar

Theses and Dissertations

The M-PACI is a personality scale based on Millon’s biosocial personality theory designed to measure emerging personality patterns in pre-adolescents (9-12 years old). There is minimal published research on this inventory, particularly in clinical contexts. For this study, we used a data set collected at a Midwestern private practice clinic where children are assessed for ADHD and learning disabilities. This study looks at how those diagnosed with ADHD differ in emerging personality patterns and current clinical signs scales compared to those in a clinical sample who have not been diagnosed with ADHD. Some studies have shown differences between children diagnosed …

Some Types Of Hyperneutrosophic Set (7): Type-M, Nonstationary, Subset-Valued, And Complex Refined, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This paper builds upon the foundational advancements introduced in [26,39–43]. TheNeutrosophic Set provides a versatile mathematical framework for addressing uncertainty through its three membership functions: truth, indeterminacy, and falsity [84]. Extensions such as the Hyperneutrosophic Set and the SuperHyperneutrosophic Set have been recently proposed to address increasingly complex and multidimensional problems. Detailed formal definitions of these concepts can be found in [33]. In this paper, we extend the Type-𝑚, Nonstationary, Subset-Valued, and Complex Refined Neutrosophic Sets using the Hyperneutrosophic Set and the SuperHyperneutrosophic Set frameworks.

Superhypergraph Neural Networks And Plithogenic Graph Neural Networks: Theoretical Foundations, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

Hypergraphs extend traditional graphs by allowing edges to connect multiple nodes, while superhypergraphs further generalize this concept to represent even more complex relationships. Neural networks, inspired by biological systems, are widely used for tasks such as pattern recognition, data classification, and prediction. Graph Neural Networks (GNNs), a well-established framework, have recently been extended to Hypergraph Neural Networks (HGNNs), with their properties and applications being actively studied. The Plithogenic Graph framework enhances graph representations by integrating multi-valued attributes, as well as membership and contradiction functions, enabling the detailed modeling of complex relationships. In the context of handling uncertainty, concepts such as …

Some Types Of Hyperneutrosophic Set (6): Multineutrosophic Set And Refined Neutrosophic Set, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This paper builds on the foundational advancements introduced in [22, 29–32]. The Neutrosophic Set pro-vides a flexible mathematical framework for managing uncertainty by utilizing three membership functions: truth, indeterminacy, and falsity. Recent extensions, such as the HyperNeutrosophic Set and the SuperHy-perNeutrosophic Set, have been developed to address increasingly complex and multidimensional challenges. Comprehensive formal definitions of these concepts are provided in [26]. In this paper, we further extend various specialized classes of Neutrosophic Sets. Specifically, we explore extensions of the MultiNeutrosophic Set and the Refined Neutrosophic Set using HyperNeutrosophic Sets and 𝑛-SuperHyperNeutrosophic Sets, providing detailed analysis and examples.

Some Types Of Hyperneutrosophic Set (5): Support, Paraconsistent, Faillibilist, And Others, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This paper builds upon the foundational advancements introduced in [14, 25–27]. The Neutrosophic Set offers a versatile mathematical framework for addressing uncertainty through its three membership functions: truth, indeterminacy, and falsity. Extensions such as the Hyperneutrosophic Set and the SuperHyperneutrosophic Set have been recently proposed to tackle increasingly sophisticated and multidimensional problems. Detailed formal definitions of these concepts can be found in [20]. In this paper, we extend various specialized classes of Neutrosophic Sets—namely, the Support Neutrosophic Set, Neutrosophic Intuitionistic Set (distinct from the Intuitionistic Fuzzy Set), Neutrosophic Paraconsistent Set, Neutrosophic Faillibilist Set, Neutrosophic Paradoxist Set, Neutrosophic Pseudo-Paradoxist Set, Neutrosophic …

Exploring Concepts Of Hyperfuzzy, Hyperneutrosophic, And Hyperplithogenic Sets (Ii), Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This paper delves into the advancements of classical set theory to address the complexities and uncertainties inherent in real-world phenomena. It highlights three major extensions of traditional set theory - Fuzzy Sets [288], Neutrosophic Sets [237], and Plithogenic Sets [243] - and examines their further generalizations into Hyperfuzzy [106], HyperNeutrosophic [90], and Hyperplithogenic Sets [90]. Building on previous research [83], this study explores the potential applications of HyperNeutrosophic Sets and SuperHyperNeutrosophic Sets across various domains. Specifically, it extends f undamental c oncepts such as Neutrosophic Logic, Cognitive Maps, Graph Neural Networks, Classifiers, and Triplet Groups through these advanced set structures …

Some Graph Parameters For Superhypertree-Width And Neutrosophictree-Width, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

Graph characteristics are often studied through various parameters, with ongoing research dedicated to exploring these aspects. Among these, graph width parameters—such as treewidth—are particularly important due to their practical applications in algorithms and real-world problems. A hypergraph generalizes traditional graph theory by abstracting and extending its concepts [77]. More recently, the concept of a SuperHyperGraph has been introduced as a further generalization of the hypergraph. Neutrosophic logic [133], a mathematical framework, extends classical and fuzzy logic by allowing the simultaneous consideration of truth, indeterminacy, and falsity within an interval. In this paper, we explore Superhypertree-width, Neutrosophic treewidth, and t-Neutrosophic tree-width.

Reconsideration Of Neutrosophic Social Science And Neutrosophic Phenomenology With Non-Classical Logic, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

Body-Mind-Soul-Spirit Fluidity is a concept rooted in psychology and phenomenology, offering significant insights into human decision-making and well-being. Similarly, in social analysis and social sciences, frameworks such as PDCA, DMAIC, SWOT, and OODA have been established to enable structured evaluation and effective p roblem-solving. Furthermore, in phenomenology and social sciences, various logical systems have been developed to address specific objectives and practical applications. This paper extends these concepts using the Neutrosophic theory, revisiting their mathematical definitions and exploring their properties. The Neutrosophic Set, an extension of the Fuzzy Set, is a highly flexible framework that has been widely studied in …