Digital Commons Network^™

The Effects Of Feed Manufacture On Exogenous Enzymes, Starch Gelatinization, And Antinutritional Factors Associated With Soybeans, Kristina M. Bowen

Graduate Theses, Dissertations, and Problem Reports (ETD)

This doctorate dissertation consists of four individual studies with the overarching theme of the effect of feed manufacture on exogenous enzymes and antinutrients found in soybeans.

Study 1. Including exogenous enzymes in poultry diets can liberate nutrients that are typically inaccessible to monogastric animals. Phytase feeding research has traditionally been conducted by rearing broilers in raised wire cages, whereas commercially grown broilers are reared on built-up litter. Therefore, cage-based studies may not accurately represent commercial bird performance response to phytase. Birds with access to litter consume it, possibly increasing phosphorus intake leading to suggestions that lower phytase concentrations are required. …

Astrocyte Reprogramming By Th17 Cells In Autoimmune Neuroinflammation: Mechanisms And Implications, Sarah Marie Milne

Graduate Theses, Dissertations, and Problem Reports (ETD)

Multiple sclerosis (MS) is a cell-mediated, demyelinating autoimmune disease that affects the central nervous system (CNS). T helper (Th) 17 cells mediate the pathogenesis of MS and its animal model, experimental autoimmune encephalomyelitis (EAE), in part by infiltrating the CNS and interacting with astrocytes, a resident glial cell. Astrocytes are central to coordinating several inflammatory processes in the CNS and can respond to cytokines and chemokines produced by encephalitogenic Th17 cells. Pathogenesis of MS and EAE requires the infiltration of immune cells from the periphery, including autoreactive T cells, B cells, monocytes, and neutrophils, that lead to neuroinflammation, demyelination, and …

Advanced Techniques In Time Series Forecasting: From Deterministic Models To Deep Learning, Xue Bai

Graduate Theses, Dissertations, and Problem Reports (ETD)

This dissertation discusses three instances of temporal prediction, applied to population dynamics and deep learning.

In population modeling, dynamic processes are frequently represented by systems of differential equations, allowing for the analysis of various phenomena. The first application explores modeling cloned hematopoiesis in chronic myeloid leukemia (CML) via a nonlinear system of differential equations. By tracking the evolution of different cell compartments, including cycling and quiescent stem cells, progenitor cells, differentiated cells, and terminally differentiated cells, the model captures the transition from normal hematopoiesis to the chronic and accelerated-acute phases of CML. Three distinct non-zero steady states are identified, representing …

Translational Approaches To Address The Metastatic/Resistant (Mr) Phenotype Of Non-Small Cell Lung Cancer Brain Metastases, Kent L. Marshall

Graduate Theses, Dissertations, and Problem Reports (ETD)

Lung cancer remains the most frequently diagnosed malignant neoplasm shared in men and women worldwide, second only to the sexually dimorphic prostate cancer in men and breast cancer in women. Overall, lung cancer was responsible for 12.5% of new cancer cases globally in the year 2022. Of these cases, 80-85% are non-small cell lung cancer (NSCLC), a highly genotypically diverse sub-type of lung cancer. Over the past three decades, extraordinary improvement in screening, smoking cessation, early diagnosis and targeted therapy have been made, improving NSCLC survival markedly. However, as patients are surviving their primary disease better, there is a temporal …

The Identification And Characterization Of Novel And Improved Antigens For Next-Generation Pertussis Vaccines, Gage Michael Pyles

Graduate Theses, Dissertations, and Problem Reports (ETD)

Whooping cough, or pertussis, is a highly infectious respiratory disease caused by infection with the Gram-negative bacterial pathogen Bordetella pertussis. Pertussis affects all age groups and populations; however, it is most severe in infants who are too young to receive vaccinations and remains a global health concern with more than­­­­ 200,000 cases reported globally in 2023. Vaccines against pertussis have been available in the United States since the 1940’s with the development and widespread use of whole cell pertussis vaccines. Following their introduction, the incidence of pertussis was controlled and limited to fewer than 5,000 cases per year. Despite …

Ice Algae As Supplementary Food Rather Than Major Energy Source For The Barents Sea Zooplankton Community, Doreen Kohlbach, Haakon Hop, Anette Wold, Katrin Schmidt, Lukas Smik, Simon T. Belt, Matthias Woll, Martin Graeve, Lucie Goraguer, Øyvind Foss, Philipp Assmy

School of Geography, Earth and Environmental Sciences

The Barents Sea is a hotspot for environmental change due to global warming. These changes impact the structure and functioning of the marine ecosystem year-round, and it is therefore important to gain knowledge on trophic relationships and the energy flow from primary producers, i.e., ice algae (sympagic algae) and phytoplankton (pelagic algae) to consumers over the entire seasonal cycle. By using different lipid components as trophic markers, we provide seasonal coverage of the carbon and food-source composition of five of the most abundant and ecologically important zooplankton taxa inhabiting the Barents Sea: copepods, krill, amphipods, pteropods and chaetognaths. Based on …

Not Just Bony Fish: All Nonmammalian And Nonavian Animals Are Neglected In Both Welfare And General Research, Jennifer A. Mather Ph.D.

Animal Sentience

The lack of research on fish welfare highlighted by Oldfield & Bonano (2024) is only part of a more general problem: a relative neglect of animals other than mammals and birds. The causes are our lack of knowledge, our negative view of what we consider to be “lower” animals and our underestimation of their intelligence and sensitivity. Our estimation will increase as our knowledge increases. As a broader view spreads to the public through the media, it should gradually increase the demand to expand both research and welfare, especially beyond mammals and birds.

Multi-Ancestry Genome-Wide Association Meta-Analysis Of Parkinson’S Disease, Jonggeol Jeffrey Kim, Dan Vitale, Diego Véliz Otani, Michelle Mulan Lian, Karl Heilbron, Stella Aslibekyan, Adam Auton, Elizabeth Babalola, Robert K. Bell, Jessica Bielenberg, Katarzyna Bryc, Emily Bullis, Paul Cannon, Daniella Coker, Gabriel Cuellar Partida, Devika Dhamija, Sayantan Das, Sarah L. Elson, Nicholas Eriksson, Teresa Filshtein, Alison Fitch, Kipper Fletez-Brant, Pierre Fontanillas, Will Freyman, Julie M. Granka, Alejandro Hernandez, Barry Hicks, David A. Hinds, Ethan M. Jewett, Yunxuan Jiang

Peninsula Medical School

Although over 90 independent risk variants have been identified for Parkinson’s disease using genome-wide association studies, most studies have been performed in just one population at a time. Here we performed a large-scale multi-ancestry meta-analysis of Parkinson’s disease with 49,049 cases, 18,785 proxy cases and 2,458,063 controls including individuals of European, East Asian, Latin American and African ancestry. In a meta-analysis, we identified 78 independent genome-wide significant loci, including 12 potentially novel loci (MTF2, PIK3CA, ADD1, SYBU, IRS2, USP8, PIGL, FASN, MYLK2, USP25, EP300 and PPP6R2) and fine-mapped 6 putative causal variants at 6 known PD loci. By combining our …

Calliope, Georgia Southern University

Calliope Magazine

Volume 42

Engendering Ethics: Recognition And Inclusion Of Intersectional Identities In Queer Communities When Conducting Population Survey Research, Kim Andreassen, Leanda D. Mason, Julian Chen

Research outputs 2022 to 2026

This paper delves into the critical importance of ethical considerations in research, with a primary focus on gender, sex, and sexual orientation. Recognizing the vulnerabilities and complexities inherent in these communities, we emphasize here the necessity of ethical awareness throughout all research phases. Ethical obligations may extend to ensuring cultural sensitivity, safety, and equitable resource distribution. The core ethical principles of autonomy, beneficence, non-maleficence, and justice are promoted here to serve as a viable framework for ethical research. These principles require meticulous attention to informed consent, minimizing harm, maximizing benefits, and promoting fairness throughout the research process. The paper delves …

Mitigating Intensive Care Unit Noise: Design-Led Modeling Solutions, Calculated Acoustic Outcomes, And Cost Implications, Emil E. Jonescu, Benjamin Farrel, Chamil E. Ramanayaka, Christopher White, Giuseppe Costanzo, Lori Delaney, Rebecca Hahn, Janet Ferrier, Edward Litton

Research outputs 2022 to 2026

Objectives, Purpose, or Aim: The study aimed to decrease noise levels in the ICU, anticipated to have adverse effects on both patients and staff, by implementing enhancements in acoustic design. Background: Recognizing ICU noise as a significant disruptor of sleep and a potential hindrance to patient recovery, this study was conducted at a 40-bed ICU in Fiona Stanley Hospital in Perth, Australia. Methods: A comprehensive mixed-methods approach was employed, encompassing surveys, site analysis, and acoustic measurements. Survey data highlighted the importance of patient sleep quality, emphasizing the negative impact of noise on work performance, patient connection, and job satisfaction. Room …

Vulnerable, Recalcitrant And Resilient: A Foucauldian Discourse Analysis Of Risk And Older People Within The Context Of Covid-19 News Media, Marjorie Skoss, Rachel Batten, Patricia Cain, Mandy Stanley

Research outputs 2022 to 2026

Risk is an innate and integral part of everyday life and is present in simple, everyday occupations and complex actions. Age-related stereotypes can mean older people have little opportunity to engage in activities that present some degree of risk. The present study explores the discourse around risk and older people in the context of the COVID-19 pandemic. We investigated news media as a reflection of the dominant public discourse around older people's behaviour to identify how risk is represented in relation to occupational engagement. Texts relating to older people and COVID-19 were sourced from the West Australian newspaper for a …

Transcriptional Precision In Photoreceptor Development And Diseases - Lessons From 25 Years Of Crx Research, Yiqiao Zheng, Shiming Chen

2020-Current year OA Pubs

The vertebrate retina is made up of six specialized neuronal cell types and one glia that are generated from a common retinal progenitor. The development of these distinct cell types is programmed by transcription factors that regulate the expression of specific genes essential for cell fate specification and differentiation. Because of the complex nature of transcriptional regulation, understanding transcription factor functions in development and disease is challenging. Research on the

Ecu-Mss-2 Dataset, A New Multi-Species Seagrass, Md K. Noman, Syed M. S. Islam, Seyed M. Jalali, Jumana Abu-Khalaf, Paul Lavery

Research Datasets

The "ECU-MSS-2' dataset contains four different habitats, 'Amphibolis' spp (hereafter 'Amphibolis"), 'Halophila' spp (hereafter 'Halophila'), 'Posidonia' spp (hereafter 'Posidonia') and 'Background'. We compiled this image dataset from different sources. The 'Halophila' images were collected by the Centre for Marine Ecosystems Research, Edith Cowan University, Western Australia.

The 'Amphibolis' 'Background' and 'Posidonia' images were collected by the Department of Biodiversity, Conservation and Attractions (DBCA), Australia. The 'Amphibolis' class includes the seagrass species Amphibolis griffithii and Amphibolis Antarctica. The 'Halophila' class includes Halophila ovalis, while the 'Posidonia' class includes Posidonia sinuosa, Posidonia coriacea, and Posidonia Australis. The 'Background' class includes coral, sand, …

Performance And Physiological Impacts Of Branched-Chain Amino Acid And Tryptophan Ratio Variations In Turkey Starter Diets Utilizing Concentrated Corn Proteins, Emily Blair Estanich

Graduate Theses, Dissertations, and Problem Reports (ETD)

In Chapter 2, a study was designed to evaluate the effects of varying dietary branched-chain amino acids (BCAA) ratio in corn and soybean meal-based turkey starter diets. The BCAA leucine, isoleucine, and valine are considered indispensable amino acids needed for energy and stimulation of muscle protein synthesis via the mammalian target of rapamycin (mTOR) pathway. Imbalanced BCAA ratios can lead to antagonism and degradation of limiting BCAA, particularly in diets with excess leucine. Concentrated corn proteins contain high levels of leucine and can alter BCAA requirements; however, crystalline BCAA may be added to correct these ratios. This study aimed to …

Cell-Type-Specific Effects Of Synaptic Zinc In Mouse Auditory Cortex, Mason Mccollum

Graduate Theses, Dissertations, and Problem Reports (ETD)

Synaptic zinc signaling modulates synaptic activity and is present in specific populations of cortical neurons, suggesting that synaptic zinc contributes to the diversity of intracortical synaptic microcircuits and their auditory tuning properties. Stimulus-specific adaptation is a hallmark of sensory processing in which a repeated stimulus results in diminished successive neuronal responses, but a deviant stimulus will still elicit robust responses from the same neurons. Recent work has established that synaptically released zinc is an endogenous mechanism that shapes neuronal responses to sounds in the auditory cortex. Here, to understand the role of zinc signaling in the auditory cortex and the …

The Effects Of Forgetting And Disclosure On Mock Jurors' Perceptions Of An Alleged Rape, Johnathan Meier

Graduate Theses, Dissertations, and Problem Reports (ETD)

Memory recall and forgetting is a complex process. Memories can be completely forgotten (e.g., Ebbinghaus, 1885/1964; Murre, 2015) or repressed and recovered at a later time (e.g., Key et al., 1996; Foster-Lee et al., 1999). Instances of sexual assault may be disclosed to a close acquaintance or medical professional at the time of the event or kept secret until the time of reporting to authorities (e.g., Pica et al., 2020a). In the current study, mock jurors’ perceptions of credibility and guilt, as well as the amount of compensation awarded to the plaintiff, will be assessed in response to testimony depicting …

Characterizing Prescribed Fire With Terrestrial Lidar In The New Jersey Pine Barrens, Samuel Rhule Stockton

Graduate Theses, Dissertations, and Problem Reports (ETD)

Prescribed burning has become a commonly used tool in the mitigation of wildfire, though monitoring the way it changes ecosystems has historically been a time-intensive process. Rapid change across ecosystems has necessitated advancements in remote sensing technologies to quantify the changes taking place. Single-scan terrestrial LiDAR scanning is one such method of monitoring these changes through the quantification of ecosystem structural characteristics. Acute disturbance events such as fire can transform the structure of an ecosystem, and by extension, change the way that ecosystem functions. The purpose of this study is to analyze the changes in vegetation density and distribution following …

Qualitative Interviews, Abraham Kenin

Research Datasets

Background: Within the context of a growing sub-Saharan Africa (SSA) population in Australia, the problem of alcohol and other drug (AOD) use by SSA youth has been reported in recent studies. Although evidence from other sociocultural contexts indicate that SSA cultural values could be protective against youth AOD use, not much is known about what pertains in the Australian context. The core justification for conducting this study is grounded on the awareness that people may perceive and conceptualize their heritage cultural values based on the sociocultural context in which they find themselves (Akkuş et al., 2017).

Objectives: To explore SSA …

Marine Heatwaves And Impacts On Marine Ecosystems, Anna Lafratta, Hollie Williams, Stanley Mastrantonis, Sharyn Hickey, Kathryn Mcmahon, Arani Chandrapavan, Andi Laidlaw, Emily Lester

Research Datasets

The metadata is a compilation of existing long-term datasets available across Western Australia coastline. This was prepared as an initial step in identifying what is known about the Western Australia marine ecosystem and to explore the responses to marine heatwaves and for future planning. For each dataset a series of information are provided, including Institute that collected the data and contact details, period and frequency of data collection, Department of Primary Industries and Regional Development (DPIRD) bioregion, habitat and species studies, variables analysed and methods of data collection. Seventeen organizations contributed to these metadata records. The details of these datasets …

Sirtuin3 Ensures The Metabolic Plasticity Of Neurotransmission During Glucose Deprivation, Anupama Tiwari, Arsalan Hashemiaghdam, Marissa A Laramie, Dario Maschi, Tristaan Haddad, Marion I Stunault, Carmen Bergom, Ali Javaheri, Vitaly Klyachko, Ghazaleh Ashrafi

2020-Current year OA Pubs

Neurotransmission is an energetically expensive process that underlies cognition. During intense electrical activity or dietary restrictions, the glucose level in the brain plummets, forcing neurons to utilize alternative fuels. However, the molecular mechanisms of neuronal metabolic plasticity remain poorly understood. Here, we demonstrate that glucose-deprived neurons activate the CREB and PGC1α transcriptional program, which induces expression of the mitochondrial deacetylase Sirtuin 3 (Sirt3) both in vitro and in vivo. We show that Sirt3 localizes to axonal mitochondria and stimulates mitochondrial oxidative capacity in hippocampal nerve terminals. Sirt3 plays an essential role in sustaining synaptic transmission in the absence of glucose …

Global Meta-Analysis Of Demersal Fishing Impacts On Organic Carbon And Associated Biogeochemistry, Justin Tiano, Emil De Borger, Sarah Paradis, Clare Bradshaw, Claudia Morys, Antonio Pusceddu, Claudia Ennas, Karline Soetaert, Pere Puig, Pere Masqué, Marija Sciberras

Research outputs 2022 to 2026

The potential threat of fisheries on seabed carbon is a topic of growing concern, yet existing literature presents inconsistencies leaving experts divided on the topic. We conducted a global meta-analysis to synthesize the current knowledge and quantify how demersal fishing impacts various biogeochemical properties. Direct impact studies revealed overall reductions in chlorophyll-a (Chl-a, 17%), phaeopigments (24%), and proteins (32%). Effects on these reactive compounds were more pronounced on surface sediment (0–2 cm), where the impact on total organic carbon (TOC) also became significant, demonstrating the effect of gear penetration, and highlighting that sampling strategies combining sediment layers can mask observed …

The Delta Concept Does Not Effectively Normalise Exercise Responses To Exhaustive Interval Training, Arthur Henrique Bossi, Wouter Timmerman, Diana Cole, Louis Passfield, James Hopker

Research outputs 2022 to 2026

Objectives: This study was designed to quantify inter- and intra-individual variability in performance, physiological, and perceptual responses to high-intensity interval training prescribed using the percentage of delta (%Δ) method, in which the gas exchange threshold and maximal oxygen uptake (V̇O2max) are taken into account to normalise relative exercise intensity. Design: Repeated-measures, within-subjects design with mixed-effects modelling. Methods: Eighteen male and four female cyclists (age: 36 ± 12 years, height: 178 ± 10 cm, body mass: 75.2 ± 13.7 kg, V̇O2max: 51.6 ± 5.3 ml·kg−1·min−1) undertook an incremental test to exhaustion to determine the gas exchange threshold and V̇O2max as prescription …

Developing International Guidance To Make Impact Assessment Follow-Up Happen–Reflections On An Interactive Design Process, Angus Morrison-Saunders, Jos Arts, Annette Nykiel, Bruce Muir, Richard Morgan, Patricia Fitzpatrick, Ciaran O’Faircheallaigh, Alberto Fonseca, Charlotta Faith-Ell, Ainhoa González, Jan Albert Wessels, Gesa Geißler, Luis Sánchez, Urmila Jha-Thakur, William Ross, John Glasson

Research outputs 2022 to 2026

To advance impact assessment (IA) practice worldwide the International Association for Impact Assessment (IAIA) has long promoted and published a series of international best practice principles, including the recently revised best practice principles for IA follow-up. IA follow-up refers to any kind of undertaking that seeks to ‘understand the outcomes of projects or plans’ that have been subject to IA. To support the implementation of these principles worldwide, a global guidance document has been developed (published by IAIA in 2024). The aims of this paper are to report on the approach undertaken to this guidance, applying a Delphi method, and …

Queering Primary Initial Teacher Education, David Rhodes, Matt Byrne, Jason Boron

Research outputs 2022 to 2026

This research was designed to raise awareness, access and understanding of lesbian, gay, bisexual, transgender, intersex, queer/questioning, asexual/aromantic and others who sit outside of the heteronormative binary (LGBTIQA+), inclusion for pre-service educators studying in Bachelor of Education (Primary) and Master of Teaching (Primary) ITE courses in one Australian university. The project involved the production of three video resources intended for inclusion in existing teacher education units. Whilst originally conceptualized as ’bite-sized‘ resources intended for use by pre-service educators, initial survey data from academic staff indicated the need to first develop the collective understanding of primary education LGBTIQA+ inclusion for the …

Kids, Courts And Canines: Evaluating The Justice Facility Dog Program Through A Therapeutic Lens In The Perth Children's Court, Suzanne Rock, Natalie Gately

Research outputs 2022 to 2026

Court environments can be stressful and induce anxiety in victims, witnesses, and other court users. Taking heed from justice facilities in other jurisdictions, the Children's Court of Western Australia introduced Winston, a justice facility dog, at the Perth Children's Court facility to help reduce the stress and anxiety of victims, witnesses, and court users. This article presents survey (n = 55) and interview data (n = 17) from staff and stakeholders who reported positive changes in the court atmosphere, with limited negative impacts on the running of the court. Surveys were also conducted with child victims/survivors (n = 13), caregivers …

A Comprehensive Multi-Omics Analysis Reveals Unique Signatures To Predict Alzheimer’S Disease, Michael Vacher, Rodrigo Canovas, Simon M. Laws, James D. Doecke

Research outputs 2022 to 2026

Background: Complex disorders, such as Alzheimer’s disease (AD), result from the combined influence of multiple biological and environmental factors. The integration of high-throughput data from multiple omics platforms can provide system overviews, improving our understanding of complex biological processes underlying human disease. In this study, integrated data from four omics platforms were used to characterise biological signatures of AD. Method: The study cohort consists of 455 participants (Control:148, Cases:307) from the Religious Orders Study and Memory and Aging Project (ROSMAP). Genotype (SNP), methylation (CpG), RNA and proteomics data were collected, quality-controlled and pre-processed (SNP = 130; CpG = 83; RNA …

Enhancing Breast Cancer Treatment: Mesoporous Dopamine Nanoparticles In Synergy With Chrysin For Photothermal Therapy, Jing Zhu, Heng Zhang, Haomiao Lan, Bing Bi, Xianfeng Peng, Dandan Li, Haili Wang, Ke Zhu, Fuqiang Shao, Minggang Yin

Research outputs 2022 to 2026

Introduction: Breast cancer is one of the most prevalent cancers, primarily affecting women. Among its subtypes, estrogen receptor-positive (ER+) breast cancer is particularly common. Inhibiting estrogen's effects is crucial for treating ER+ breast cancer, but current therapies often have significant side effects and limitations. Chrysin, a natural flavonoid, has shown potential in reducing estrogen receptor expression, but its poor water solubility hampers clinical application. This study explores the use of mesoporous dopamine nanoparticles (mPDA) to enhance the delivery and efficacy of Chrysin, combined with photothermal therapy (PTT), for breast cancer treatment. Methods: Chrysin-loaded mPDA nanoparticles (Chrysin@mPDA) were synthesized and characterized …

Editorial - Contemporary Marine Science, Its Utility And Influence On Regulation And Government Policy, Piers Larcombe, Angus Morrison-Saunders, Peter V. Ridd

Research outputs 2022 to 2026

The purpose of this Research Topic is to evaluate the quality of contemporary marine science and to examine relationships between science, regulation and government policy in the marine environment. The quality of marine science matters; not just to advance knowledge on understanding marine ecosystems, but also to guide marine management. ...

Source-Specific Nitrate And Nitrite Intakes And Associations With Sociodemographic Factors In The Danish Diet Cancer And Health Cohort, Dorit W. Erichsen, Pratik Pokharel, Cecilie Kyrø, Jörg Schullehner, Liezhou Zhong, Catherine P. Bondonno, Frederik Dalgaard, Peter Hendriksen, Torben Sigsgaard, Jonathan M. Hodgson, Anja Olsen, Anne Tjønneland, Nicola P. Bondonno

Research outputs 2022 to 2026

Background: The dietary source and intake levels of nitrate and nitrite may govern its deleterious versus beneficial effects on human health. Existing evidence on detailed source-specific intake is limited. The objectives of this study were to assess nitrate and nitrite intakes from different dietary sources (plant-based foods, animal-based foods, and water), characterize the background diets of participants with low and high intakes, and investigate how sociodemographic and lifestyle factors associate with intake levels. Methods: In the Danish Diet, Cancer and Health Cohort, sociodemographic and lifestyle information was obtained from participants at enrolment (1993–1997). Source-dependent nitrate and nitrite intakes were calculated …