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Micromeria Tenensis (Lamiaceae), A New Species From Tenerife, Canary Islands, Pamela Puppo, Pedro Luis Pérez De Paz, Manuel Curto, Harald Meimberg

Biological Sciences Faculty Research

Based on molecular and morphological evidence, a new species of Micromeria is described for Tenerife, Canary Islands. Micromeria tenensis is endemic to the massif of Teno, occurring between 100–1000 m elevation. It is characterized by having more or less pendulous branches, tomentose stems and leaves, hispid calyx, and calyx apices triangular to lanceolate, densely white hispid.

Not So Obvious: Patent Examiners Need Advanced Tools To Support United States Innovation, Steve Zelezny

University of the Pacific Law Review

No abstract provided.

Limnological Response Of Las Curias Reservoir, San Juan, Puerto Rico: Successful Management Of The Invasive Aquatic Fern, Salvinia Molesta, Xavier A. García-López, Jorge R. Ortiz-Zayas, Rodrigo Díaz, Aurelio Castro-Jiménez, Charles F. Wahl

Faculty Publications

The anthropogenic deterioration of aquatic ecosystems affects water resources due to agricultural malpractices, pollution from domestic septic tanks, recreational activities, and poor watershed management, among other factors. This study examines the management of Las Curias Reservoir, San Juan, Puerto Rico, after the 2016 arrival of the invasive aquatic fern Salvinia molesta. In September 2019, a community-led initiative introduced the Cyrtobagous salviniae weevil, an effective biological control agent for S. molesta, and commenced a mechanical removal campaign using an aquatic harvester. Limnological sampling (September 2019 to September 2022) and drone flights were employed to measure physicochemical and floating plant cover changes, …

A Phoenix Glimmers Within The Ashes: Generalized Defensive Traits Suggest Hope For Plants Under Attack By Invasive Pests, Todd D. Johnson, Justin G.A. Whitehill

Faculty Publications

No abstract provided.

A Membrane Protein Of The Rice Pathogen Burkholderia Glumae Required For Oxalic Acid Secretion And Quorum Sensing, Asif Iqbal, George Nwokocha, Vijay Tiwari, Inderjit K. Barphagha, Anne Grove, Jong Hyun Ham, William T. Doerrler

Faculty Publications

Bacterial panicle blight is caused by Burkholderia glumae and results in damage to rice crops worldwide. Virulence of B. glumae requires quorum sensing (QS)-dependent synthesis and export of toxoflavin, responsible for much of the damage to rice. The DedA family is a conserved membrane protein family found in all bacterial species. B. glumae possesses a member of the DedA family, named DbcA, which we previously showed is required for toxoflavin secretion and virulence in a rice model of infection. B. glumae secretes oxalic acid as a “common good” in a QS-dependent manner to combat toxic alkalinization of the growth medium …

Effects Of Ingested Essential Oils And Propolis Extracts On Honey Bee (Hymenoptera: Apidae) Health And Gut Microbiota, Allyson Martin Ewert, Michael Simone-Finstrom, Quentin Read, Claudia Husseneder, Vincent Ricigliano

Faculty Publications

Managed honey bee (Hymenoptera: Apidae: Apis mellifera Linnaeus) hives require frequent human inputs to maintain colony health and productivity. A variety of plant natural products (PNPs) are delivered via feeding to control diseases and reduce the use of synthetic chemical treatments. However, despite their prevalent use in beekeeping, there is limited information regarding the impact of ingested PNPs on bee health. Here, we tested the effects of different essential oils and propolis extracts on honey bee life span, nutrient assimilation, xenobiotic detoxification, and gut microbiota abundance. Brazilian propolis extract lengthened worker life span, while the other PNPs (Louisiana propolis extract, …

Weight And Protozoa Number But Not Bacteria Diversity Are Associated With Successful Pair Formation Of Dealates In The Formosan Subterranean Termite, Coptotermes Formosanus, Junyan Chen, Garima Setia, Li Hsiang Lin, Qian Sun, Claudia Husseneder

Faculty Publications

New colonies of Formosan subterranean termites are founded by monogamous pairs. During swarming season, alates (winged reproductives) leave their parental colony. After swarming, they drop to the ground, shed their wings, and male and female dealates find suitable nesting sites where they mate and become kings and queens of new colonies. The first generation of offspring is entirely dependent on the nutritional resources of the founder pair consisting of the fat and protein reserves of the dealates and their microbiota, which include the cellulose-digesting protozoa and diverse bacteria. Since termite kings and queens can live for decades, mate for life …

Oxidative Stress In Health And Disease, V. Prakash Reddy

Chemistry Faculty Research & Creative Works

Oxidative stress, resulting from the excessive intracellular accumulation of reactive oxygen species (ROS), reactive nitrogen species (RNS), and other free radical species, contributes to the onset and progression of various diseases, including diabetes, obesity, diabetic nephropathy, diabetic neuropathy, and neurological diseases, such as Alzheimer's disease (AD), amyotrophic lateral sclerosis (ALS), and Parkinson's disease (PD). Oxidative stress is also implicated in cardiovascular disease and cancer. Exacerbated oxidative stress leads to the accelerated formation of advanced glycation end products (AGEs), a complex mixture of crosslinked proteins and protein modifications. Relatively high levels of AGEs are generated in diabetes, obesity, AD, and other …

Community-Wide Correlations Between Species Richness, Abundance And Population Genomic Diversity In A Freshwater Biodiversity Hotspot, Jamie R. Bucholz, Garrett W. Hopper, Irene Sánchez González, Taylor E. Kelley, Colin R. Jackson, Ryan C. Garrick, Carla L. Atkinson, Jeffrey D. Lozier

Faculty Publications

Understanding patterns of diversity across macro (e.g. species-level) and micro (e.g. molecular-level) scales can shed light on community function and stability by elucidating the abiotic and biotic drivers of diversity within ecological communities. We examined the relationships among taxonomic and genetic metrics of diversity in freshwater mussels (Bivalvia: Unionidae), an ecologically important and species-rich group in the southeastern United States. Using quantitative community surveys and reduced-representation genome sequencing across 22 sites in seven rivers and two river basins, we surveyed 68 mussel species and sequenced 23 of these species to characterize intrapopulation genetic variation. We tested for the presence of …

Adipocyte Stat5 (Signal Transducer And Activator Of Transcription 5) Is Not Required For Glucocorticoid-Induced Metabolic Dysfunction, Innocence Harvey, Allison J. Richard, Tamra M. Mendoza, Jacqueline M. Stephens

Division of Basic Science Faculty Publications

Excess glucocorticoid (GC) signaling in adipose tissue is a key driver of insulin resistance and hepatic steatosis, but underlying mechanisms have not been fully elucidated. Signal transducer and activator of transcription 5 (STAT5) signaling in adipocytes has also been implicated in the progression of similar metabolic disturbances. Although STAT5 has been shown to interact with the glucocorticoid receptor (GR) in many cell types including adipocytes, the relevance of the STAT5/GR complex has not been investigated in adipocytes. Adult male and female adipocyte-specific STAT5 knockout (STAT5AKO) and floxed mice were given corticosterone (CORT) or vehicle in their drinking water for 1 …

Omics-Driven Investigation Of The Biology Underlying Intrinsic Submaximal Working Capacity And Its Trainability, Monalisa Hota, Jacob L. Barber, Jonathan J. Ruiz-Ramie, Charles S. Schwartz, Do Thuy Uyen Ha Lam, Prashant Rao, Michael Y. Mi, Daniel H. Katz, Jeremy M. Robbins, Clary B. Clish, Robert E. Gerszten, Mark A. Sarzynski, Sujoy Ghosh, Claude Bouchard

Division of Basic Science Faculty Publications

Submaximal exercise capacity is an indicator of cardiorespiratory fitness with clinical and public health implications. Submaximal exercise capacity and its response to exercise programs are characterized by heritability levels of about 40%. Using physical working capacity (power output) at a heart rate of 150 beats/min (PWC150) as an indicator of submaximal exercise capacity in subjects of the HERITAGE Family Study, we have undertaken multi-omics and in silico explorations of the underlying biology of PWC150 and its response to 20 wk of endurance training. Our goal was to illuminate the biological processes and identify panels of genes associated with human variability …

Quantitative Trait Loci, Candidate Genes, And Breeding Lines To Improve Salt Tolerance At The Flowering And Seedling Stages In Rice, Rajat Pruthi, Sandeep Chapagain, Sapphire Coronejo, Lovepreet Singh, Prasant Kumar Subudhi

Faculty Publications

Salinity is a major environmental constraint that limits growth and productivity of rice all over the world. Although rice plants are vulnerable to salt stress at both seedling and flowering stages, genetic dissection of salt tolerance at the flowering stage is challenging due to non-uniformity of stress application at the appropriate growth stage. The present study was conducted to identify quantitative trait loci (QTLs) and candidate genes associated with the flowering stage salt tolerance and compare with those associated with the seedling stage using a high-resolution genetic map. A population of advanced generation introgression lines with uniform flowering time was …

Bariatric Surgery Alters Mitochondrial Function In Gut Mucosa, Robert C. Ross, Elizabeth C. Heintz, Elizabeth R.M. Zunica, R. Leigh Townsend, Amanda E. Spence, Philip R. Schauer, John P. Kirwan, Christopher L. Axelrod, Vance L. Albaugh

Division of Basic Science Faculty Publications

Background: The obesity pandemic has worsened global disease burden, including type 2 diabetes, cardiovascular disease, and cancer. Metabolic/bariatric surgery (MBS) is the most effective and durable obesity treatment, but the mechanisms underlying its long-term weight loss efficacy remain unclear. MBS drives substrate oxidation that has been linked to improvements in metabolic function and improved glycemic control that are potentially mediated by mitochondria—a primary site of energy production. As such, augmentation of intestinal mitochondrial function may drive processes underlying the systemic metabolic benefits of MBS. Herein, we applied a highly sensitive technique to evaluate intestinal mitochondrial function ex vivo in a …

Access, Interest, And Barriers To Incorporation Of Birth Doula Care In The United States, Amanda W. Mitchell, Joshua R. Sparks, Robbie A. Beyl, Abby D. Altazan, S. Ariel Barlow, Leanne M. Redman

Clinical Research Faculty Publications

Doula care improves maternal care, yet barriers exist to incorporating doula care. The purpose of this study was to evaluate interest and barriers to doula care. Overall, 508 women, 26–35 years of age (54.5%), White/Caucasian (89.8%), and married (88.6%), completed this study. Most reported ≥1 previous birth (97.6%). Respondents would “feel comfortable” (73.2%) and “more confident” (54.9%) with doula care at birth, and 57.9% reported their provider would be supportive of doula care. Only 39.0% expressed benefits to doula care during pregnancy compared to 72.6% at birth and 68.1% during postpartum. Most would hire a doula if health insurance covered …

Circular-Swat For Deep Learning Based Diagnostic Classification Of Alzheimer's Disease: Application To Metabolome Data, Taeho Jo, Junpyo Kim, Paula Bice, Kevin Huynh, Tingting Wang, Matthias Arnold, Peter J. Meikle, Peter J. Meikle, Corey Giles, Rima Kaddurah-Daouk, Andrew J. Saykin, Kwangsik Nho, Alexandra Kueider-Paisley, P. Murali Doraiswamy, Colette Blach, Arthur Moseley, Will Thompson, Lisa St John-Williams, Siamak Mahmoudiandehkhordi, Jessica Tenenbaum, Kathleen Welsh-Balmer, Brenda Plassman, Shannon L. Risacher, Gabi Kastenmüller, Xianlin Han, Rebecca Baillie, Rob Knight, Pieter Dorrestein, James Brewer, Emeran Mayer, Jennifer Labus, Pierre Baldi, Arpana Gupta, Oliver Fiehn

Clinical Research Faculty Publications

Background: Deep learning has shown potential in various scientific domains but faces challenges when applied to complex, high-dimensional multi-omics data. Alzheimer's Disease (AD) is a neurodegenerative disorder that lacks targeted therapeutic options. This study introduces the Circular-Sliding Window Association Test (c-SWAT) to improve the classification accuracy in predicting AD using serum-based metabolomics data, specifically lipidomics. Methods: The c-SWAT methodology builds upon the existing Sliding Window Association Test (SWAT) and utilizes a three-step approach: feature correlation analysis, feature selection, and classification. Data from 997 participants from the Alzheimer's Disease Neuroimaging Initiative (ADNI) served as the basis for model training and validation. …

Expanding Non-Invasive Approaches For Fish-Health Monitoring: A Survey Of The Epidermal Mucous Metabolomes Of Phylogenetically Diverse Freshwater Fish Species, Drew R. Ekman, Marina G. Evich, Jonathan D. Mosley, Jon A. Doering, Kellie A. Fay, Gerald T. Ankley, Timothy W. Collette

Faculty Publications

There is a pressing need for more-holistic approaches to fisheries assessments along with growing demand to reduce the health impacts of sample collections. Metabolomic tools enable the use of sample matrices that can be collected with minimal impact on the organism (e.g., blood, urine, and mucus) and provide high-throughput, untargeted biochemical information without the requirement of a sequenced genome. These qualities make metabolomics ideal for monitoring a wide range of fish species, particularly those under protected status. In the current study, we surveyed the relative abundances of 120 endogenous metabolites in epidermal mucus across eight freshwater fish species belonging to …

Responses Of Phytoplankton Communities To The Effect Of Both River Plume And Coastal Upwelling, Zhuyin Tong, Lingqi Ma, Shujie Cai, Lei Wang, Wupeng Xiao, Bangqin Huang, Edward A. Laws

Faculty Publications

River plumes and coastal upwelling systems are both nutrient-abundant habitats compared to the open ocean, and the mechanisms that structure the phytoplankton community when these occur together are unclear. In this study we investigated the dynamics and drivers of phytoplankton biomass and community composition in the Pearl River plume-coastal upwelling system on the northern South China Sea shelf during summer. We found that phytoplankton biomass was lower in the plume than in upwelled water. Diatoms were the only dominant group in the upwelled water. In contrast, diatoms and Synechococcus were co-dominant in the plume, and the negative correlation between the …

Widespread Sympatry In A Species-Rich Clade Of Marine Fishes (Carangoidei), Jessica R. Glass, Richard C. Harrington, Peter F. Cowman, Brant C. Faircloth, Thomas J. Near

Faculty Publications

A universal paradigm describing patterns of speciation across the tree of life has been debated for decades. In marine organisms, inferring patterns of speciation using contemporary and historical patterns of biogeography is challenging due to the deficiency of species-level phylogenies and information on species' distributions, as well as conflicting relationships between species' dispersal, range size and co-occurrence. Most research on global patterns of marine fish speciation and biogeography has focused on coral reef or pelagic species. Carangoidei is an ecologically important clade of marine fishes that use coral reef and pelagic environments. We used sequence capture of 1314 ultraconserved elements …

Exposing The Error Hidden In Plain Sight: A Critique Of Calder's (1983) Group Selectionist Seed-Dispersal Hypothesis For Mistletoe “Mimicry” Of Host Plants, Kyle E. Harms, David M. Watson, Luis Y. Santiago-Rosario, Sarah Mathews

Faculty Publications

Some mistletoe species (Loranthaceae) resemble their host plants to a striking degree. Various mechanisms have been proposed for the developmental origins of novel traits that cause mistletoes to appear similar to their hosts, as well as for the adaptive phenotypic evolution of such traits. Calder (1983) proposed a logically flawed group selectionist seed-dispersal hypothesis for mistletoes to resemble their hosts. Calder's (1983) hypothesis does not provide a viable potential explanation for mistletoe resemblance to hosts.

A Target Enrichment Probe Set For Resolving Phylogenetic Relationships In The Coffee Family, Rubiaceae, Laymon D. Ball, Ana M. Bedoya, Charlotte M. Taylor, Laura P. Lagomarsino

Faculty Publications

Premise: Rubiaceae is among the most species-rich plant families, as well as one of the most morphologically and geographically diverse. Currently available phylogenies have mostly relied on few genomic and plastid loci, as opposed to large-scale genomic data. Target enrichment provides the ability to generate sequence data for hundreds to thousands of phylogenetically informative, single-copy loci, which often leads to improved phylogenetic resolution at both shallow and deep taxonomic scales; however, a publicly accessible Rubiaceae-specific probe set that allows for comparable phylogenetic inference across clades is lacking. Methods: Here, we use publicly accessible genomic resources to identify putatively single-copy nuclear …

Influences Of Yogurt With Functional Ingredients From Various Sources That Help Treat Leaky Gut On Intestinal Barrier Dysfunction In Caco-2 Cells, Ricardo S. Aleman, Ryan Page, Roberto Cedillos, Ismael Montero-Fernández, Jhunior Abraham Marcia Fuentes, Douglas W. Olson, Kayanush Aryana

Faculty Publications

The impact of yogurts made with starter culture bacteria (L. bulgaricus and S. thermophilus) and supplemented with ingredients (maitake mushrooms, quercetin, L-glutamine, slippery elm bark, licorice root, N-acetyl-D-glucosamine, zinc orotate, and marshmallow root) that can help treat leaky gut were investigated using the Caco-2 cell monolayer as a measure of intestinal barrier dysfunction. Milk from the same source was equally dispersed into nine pails, and the eight ingredients were randomly allocated to the eight pails. The control had no ingredients. The Caco-2 cells were treated with isoflavone genistein (negative control) and growth media (positive control). Inflammation was stimulated using an …

Synergistic In Vitro Antiviral Effect Of Combinations Of Ivermectin, Essential Oils, And 18-(Phthalimid-2-Yl)Ferruginol Against Arboviruses And Herpesvirus, Liliana Betancur-Galvis, Orlando José Jimenez-Jarava, Fatima Rivas, William E. Mendoza-Hernández, Miguel A. González-Cardenete

Faculty Publications

Combining antiviral drugs with different mechanisms of action can help prevent the development of resistance by attacking the infectious agent through multiple pathways. Additionally, by using faster and more economical screening methods, effective synergistic drug candidates can be rapidly identified, facilitating faster paths to clinical testing. In this work, a rapid method was standardized to identify possible synergisms from drug combinations. We analyzed the possible reduction in the antiviral effective concentration of drugs already approved by the FDA, such as ivermectin (IVM), ribavirin (RIBA), and acyclovir (ACV) against Zika virus (ZIKV), Chikungunya virus (CHIKV), and herpes virus type 2 (HHV-2). …

Towards Critical Reflexivity In Gifted Education Teacher Preparation, Inna Kruvi

Theses and Dissertations

Ever since the emergence of gifted education in the United States in the beginning of the twentieth century, the concept of giftedness has been used to marginalize, segregate, and exclude students of particular backgrounds from specialized academic programs. Among the factors that contribute to unequal access to gifted education for ethnically, culturally, linguistically, and economically diverse (ECLED) students, teacher bias, deficit thinking, and insufficient teacher preparation have been identified as especially significant (Coleman et al., 2015; DeWet & Gubbins, 2011; Mansfield, 2015). Among various approaches to mitigate underrepresentation of ECLED students, the concept of cultural humility (Tervalon and Murray-Garcia, 1998) …

Limited Clinical Utility Of Routine Mycobacterial Cultures For The Management Of Diabetic Foot Infections, Laila M. Castellino, Clare Mccormick-Baw, Tyler Coye, Peter A. Crisologo, John J. Hanna, Francesca Lee, Andrew Clark, Michael Fanning, Amanda L. Killeen

School of Podiatric Medicine Publications

Mycobacterial infections of the foot and ankle are uncommon. In a cohort of 2340 patients with diabetic foot infection (DFI) in a region with increased prevalence of mycobacterial disease, we identified no clinically significant positive cultures over a 3-year period. Routine mycobacterial culture of DFIs is of limited clinical utility.

Andrews Receives Title Iii Continuation Grant, Sara Hamstra

Lake Union Herald

No abstract provided.

Motif-Cluster: A Spatial Clustering Package For Repetitive Motif Binding Patterns, Mengyuan Zhou

School of Computing: Dissertations, Theses, and Student Research

Previous efforts in using genome-wide analysis of transcription factor binding sites (TFBSs) have overlooked the importance of ranking potential significant regulatory regions, especially those with repetitive binding within a local region. Identifying these homogenous binding sites is critical because they have the potential to amplify the binding affinity and regulation activity of transcription factors, impacting gene expression and cellular functions. To address this issue, we developed an open-source tool Motif-Cluster that prioritizes and visualizes transcription factor regulatory regions by incorporating the idea of local motif clusters. Motif-Cluster can rank the significant transcription factor regulatory regions without the need for experimental …

Oglethorpe University Welcomes Amo Ikiror, Chamyre Hynson, Amo Ikiror

Georgia Library Quarterly

No abstract provided.

The Lumberjack, November 01, 2023

Cal Poly Humboldt's Student Newspaper

The student newspaper of Humboldt State University.

2023-November-01-A Trailblazer For Change, University Marketing And Communication, East Tennessee State University

ETSU News

George Nichols has made an indelible mark on the history of East Tennessee State University.

Mr. Nichols was born and grew up in Johnson City and graduated from Langston High School as Salutatorian of his class. After graduating from Langston, he was one of four African American undergraduate students who integrated East Tennessee State College, now ETSU, in the fall of 1958 and was one of the first Black members of ETSU's ROTC program.

Hear more about his story and the history he lived in this special episode of Primary Sources hosted by Dr. Daryl A. Carter, associate dean and …

Enhancing Brain-Computer Interface (Bci)-Based Color Vision Assessment Subtitle : A New Protocol For Using Steady-State Visual Evoked Potentials To Identify Metamers, Marc Diraimo

Legacy Theses & Dissertations (2009 - 2024)

This thesis describes work to design, optimize, and perform initial validation of an enhancedbrain-computer interface (BCI)-based color vision (CV) assessment protocol. Our overall goal was to enhance the speed, precision, and interpretability of BCI-based CV assessment. We drew inspiration from the design of the anomaloscope, the “gold-standard” of CV assessment, and eliminated differences in luminance between test stimuli that require existing BCI-based CV assessment protocols to complete a multidimensional search during BCI-based CV assessments. Following the protocol design phase, we completed three pilot experiments: (1) We analyzed the effect of ambient lighting on the new protocol; (2) We compared the …