Digital Commons Network^™

Raman Spectroscopy Reveals Phenotype Switches In Breast Cancer Metastasis, Santosh Kumar Paidi, Joel Rodriguez Troncoso, Mason G. Harper, Zhenhui Liu, Khue G. Nguyen, Sruthi Ravindranathan, Lisa Rebello, David E. Lee, Jesse D. Ivers, David A. Zaharoff, Narasimhan Rajaram, Ishan Barman

Biomedical Engineering Faculty Publications and Presentations

The accurate analytical characterization of metastatic phenotype at primary tumor diagnosis and its evolution with time are critical for controlling metastatic progression of cancer. Here, we report a label-free optical strategy using Raman spectroscopy and machine learning to identify distinct metastatic phenotypes observed in tumors formed by isogenic murine breast cancer cell lines of progressively increasing metastatic propensities. Methods: We employed the 4T1 isogenic panel of murine breast cancer cells to grow tumors of varying metastatic potential and acquired label-free spectra using a fiber probe-based portable Raman spectroscopy system. We used MCR-ALS and random forests classifiers to identify putative spectral …

Machine Learning Approaches To Improve Prediction In Health Care, Sadaf Kabir

Graduate Theses, Dissertations, and Problem Reports (ETD)

The availability of data and advanced data analysis tools in the health care domain provide great opportunities for the discovery of unknown or hidden patterns in clinical data. However, medical data is often incomplete and has poor quality, e.g., it contains missing values or too many unnecessary features. Majority of these issues are induced by uncertainty in clinical trials and examinations, such as human error, patients’ withdrawal during studies, malfunctioning of data collection equipment, and are generally inevitable. Properly addressing these issues can lead to the development of precise predictive models and consequently more reliable clinical decision making. Accurate predictive …

Knowledge And Training In Language Sample Analysis Of Us Speech-Language Pathology Graduate Students, Allegra Cornaglia

Graduate Theses, Dissertations, and Problem Reports (ETD)

Purpose: Speech-language pathologists (SLPs) play an integral role in identification and treatment of developmental language disorders (DLD). Best practices include the use of language sample analysis (LSA) as part of a comprehensive evaluation. However, LSA requires a specific set of foundational morphological and syntactic knowledge. Previous studies have shown a knowledge gap for both SLPs and SLP graduate students for other areas of morphosyntax and phonology. This study examined the language analysis skills of current SLP graduate students on a test of Mean Length of Utterance (MLU) analysis and Clausal Density (CD) and whether there were possible factors associated with …

Smallmouth Bass (Micropterus Dolomieu) Population Characteristics And An Evaluation Of Management Responses In Two West Virginia Watersheds, Jacob D. Harrell

Graduate Theses, Dissertations, and Problem Reports (ETD)

Smallmouth Bass (Micropterus dolomieu) population characteristics were examined within the Tygart and Cheat River watersheds of north-central West Virginia. Growth, mortality and recruitment were examined for each individual population prior to modeling potential effects of various management schemes. Smallmouth Bass were sampled for total length and weight, aged using sagittal otoliths and sexed through observations of gonadal or ovarian development. Growth for each population was examined using von Bertalanffy growth models and assessed for variation among populations. Population demographic characteristics differed between and among populations, most noticeably between riverine and lacustrine habitat, whereby growth, mortality and recruitment were higher …

Assessment Of The Geographic Distribution And Tools To Assist With Conservation Of Spotted Turtles (Clemmys Guttata) In West Virginia, Joel Leal Mota

Graduate Theses, Dissertations, and Problem Reports (ETD)

Turtles are one of the most globally threatened vertebrate groups, largely due to habitat loss, commercial exploitation, climate change, disease, and invasive species. In the United States, the spotted turtle (Clemmys guttata) is among over 50 amphibian and reptile species recently petitioned to be listed under the Endangered Species Act of 1973 (ESA). The U.S. Fish and Wildlife Service subsequently determined the spotted turtle to be a candidate species for listing. Historically, spotted turtles were known to occur at a few locations in the eastern panhandle region of West Virginia. However, previous attempts to determine the distributional extent …

Passive Self-Ligating Brackets Vs. Conventional Brackets: Is There A Difference In The Transverse Dimension? A Systematic Review And Meta-Analysis, Justin Scott Tenbrook

Graduate Theses, Dissertations, and Problem Reports (ETD)

Background and Objectives:

Self-ligating brackets have risen in popularity in clinical orthodontics, but many claims made by their manufacturers have been made without substantial evidence. Any differences among the bracket types are very small when consulting new peer reviewed literature testing their differences. Nevertheless, self-ligating brackets are still purported to be able to increase the dental transverse dimension more effectively than conventional brackets. In 2018, Yang et al. performed a systematic review on the transversal changes, space closure, and efficiency of conventional and self-ligating appliances. Since then, there were several clinical trials published in the literature comparing the mandibular arch …

Summer Habitat Use, Home Range, And Effect Of Catch And Release Mortality On The Trophy Potential Of Muskellunge, (Esox Masquinongy, Mitchill, 1824), In A Southern Reservoir Population, Peter Isaac Jenkins

Graduate Theses, Dissertations, and Problem Reports (ETD)

Research on Muskellunge (Esox masquinongy, Mitchill, 1824) catch-and-release mortality has been historically focused on the Midwest, Great Lakes, and Ontario. In the southern portion of their range, which we consider to be the portion of the species distribution south of the Mason-Dixon Line (~40°N), Muskellunge, may experience significantly warmer temperatures than those in previous studies and anglers have expressed concern about summer catch-and-release mortality. As part of a broader study to quantify catch-and-release summer mortality in the southern range of Muskellunge, we utilized radio telemetry and active tracking to verify individual movement and survival of Muskellunge in Stonewall …

Borderlands And Mestiza Consciousness In Appalachia: Latina Undergraduate Experiences In A Predominantly White Institution, Susana Mazuelas Quirce

Graduate Theses, Dissertations, and Problem Reports (ETD)

This qualitative phenomenological study explores the experiences of eight undergraduate Latinas in a Predominantly White Institution in the Appalachian region using Gloria Anzaldúa’s insights on Borderlands and Mestiza consciousness. A vast majority of the studies focused on the Latinx college student population that takes place in states and tertiary institutions with a dense concentration of Latinx population, leaving rural areas—especially the Appalachian region— unexplored. There is, as well, a scarcity of studies in research focused on four-year-degree-granting institutions in which Latinx are highly underrepresented. A substantial number of studies continue presenting Latinx students as a homogenous group despite their heterogeneity …

Global Engagement Model For Land-Grant Universities, A Grounded Theory., Lorena Ivonne Ballester

Graduate Theses, Dissertations, and Problem Reports (ETD)

The purpose of this study is to examine how land-grant universities engage with the public in the era of globalization; to explain the institutionalization of engagement processes accounting for the global context; and, to integrate this analysis into a Global Engagement Model for Land-Grant Universities (GEM) implementing a grounded theory research methodology.

GEM’s foundation is both theoretical and empirical. Applying the intensity sampling method, the universities selected for the empirical base were: The University of California, Davis, Michigan State University, and The Pennsylvania State University. Rather than an exact representation of individual universities’ engagement models, the model is the researcher’s …

Eco-Material Rifts In South Asian Anglophone Fiction, Muhammad Manzur Alam

Graduate Theses, Dissertations, and Problem Reports (ETD)

I examine how South Asian Anglophone fiction represents the evolution and derangement of postcolonial ecologies, especially how unrelenting colonial and capitalist interventions affect the symbiotic relationship between subaltern people and nonhuman entities. The conceptual methodology develops from Karl Marx’s theory of “metabolic rift,” which illustrates how capitalist exportation of crops causes loss of important soil nutrients because the nutrients are consumed in distant locations and not returned to the original soil. My concept of “eco-material rifts” extends Marx’s idea to contend that the “rifts” have grown into more complicated and difficult to remediate modes of material rifts today. I scrutinize …

A Tool For Biometric Interpretation Of Forensic Str Dna Profiles, Ahmad Jamal Baroudi

Graduate Theses, Dissertations, and Problem Reports (ETD)

Rapid DNA biometric identification applications are becoming more essential and widely used in human identity validation processes. Despite their powerful identification capabilities, processing a sample to generate a forensic DNA profile still takes longer compared with other rapid biometric technologies. Methods used to speed up the analysis could lead to signal artifacts similar to those arising from low copy or degraded DNA samples, making the electropherogram unsuitable for forensic interpretation and analysis. The goal of this research effort is to apply biometrics and mathematical approaches to forensic STR (Short Tandem Repeat) profiles. To accomplish this goal, a multi-function software tool …

Ecology Of Black-Legged Ticks (Ixodes Scapularis) At Fort Drum Military Installation, New York, Lucas Eli Price

Graduate Theses, Dissertations, and Problem Reports (ETD)

The number of confirmed cases of Lyme disease in the United States of America has risen from 12,801 cases reported in 1997, which is the earliest year these data are available, to 23,453 confirmed cases in 2019. In the eastern United States, black-legged ticks (Ixodes scapularis) are the primary vector of Lyme disease, which is caused by the spirochete bacterium, Borrelia burgdorferi. Tick abundance tends to be highest in dense forest habitats and where wildlife diversity is low. Because wildlife species have varying levels of competency as reservoir hosts, sources of tick bloodmeals influence Lyme disease ecology. …

Genetic Underpinnings Of Novel Trait Development In A Euwallacea-Fusarium Mutualism, Elaina J. Spahr

Graduate Theses, Dissertations, and Problem Reports (ETD)

Evolutionary Developmental Biology seeks to answer fundamental questions about the mechanisms underlying the evolution and innovation towards increasing structural complexity within the body plan. The ambrosia symbiosis, a polyphyletic group of xylem-feeding beetles, provides a wealth of diversity in novel pouch-like structures called mycangia. This diversity could serve as a rich model for understanding how mutualisms may prompt structural innovation and diversification in a host organism. The ambrosia symbiosis has become a fast-growing research subject in entomology and forest pathology but has yet to experience the same attention under the lens of evolutionary developmental genetics.

Development of mycangia was examined …

Aerodynamic Performance Of A Biologically Inspired Hybrid Plasma-Mechanical Flow Control And Sensing Device, Joseph Dygert

Graduate Theses, Dissertations, and Problem Reports (ETD)

The continued high global demand for passenger and freight air traffic along with increased use of unmanned aerial vehicles operating in broader Reynolds number regimes has resulted in researchers examining alternative technologies, which would result in safer, more reliable, and superior performing aircraft. Aerodynamic flow control may be one of the most promising approaches to solving this problem, having already proven its ability to enable higher flow efficiency while simultaneously improving overall control of flow behavior such as laminar-to-turbulent transition. Recent research in aerodynamic flow control has seen a pronounced growth in the areas of biomimicry and plasma flow control …

Survival Rate Of Dental Implants Placed In Alveolar Ridge Preservation Sites - Systematic Review, Sravanthi Papisetti

Graduate Theses, Dissertations, and Problem Reports (ETD)

Introduction: It is not known so far performing Alveolar Ridge Preservation (ARP) in a freshly extracted socket with intact walls would improve clinical outcomes of implants placed in these sites. It is not known whether different biomaterials and techniques would affect the survival of dental implants.

Aim: The current systematic review is undertaken to assess the survival rate of dental implants placed in these sockets and to assess different socket graft materials as well as techniques of ridge preservation with regard to the survival of implants.

Material methods: Search for relevant articles was done in Medline (PubMed). No …

Factors Influencing Brook Trout Population Dynamics And Resilience In Central Appalachian Headwater Streams, Christopher W. Schwinghamer

Graduate Theses, Dissertations, and Problem Reports (ETD)

Central Appalachia has a unique history of human perturbation due largely to its historical economic reliance on extractive industry and timber harvest. Legacy impacts from these historic disturbances along with contemporary stressors in the form of continued industry, changing climates, altered land use, habitat fragmentation, and introduced species can present great threats to the region’s aquatic ecosystems. Brook Trout Salvelinus fontinalis are a species that has recreational and economic importance to the communities of central Appalachia but declines in size and abundance have been observed. Given the disturbances that threaten Brook Trout populations, understanding how their populations will respond to …

Mtdna Heteroplasmy In Hair Shafts Versus Buccal Swabs For Forensic Applications, Sara R. Bodnar

Graduate Theses, Dissertations, and Problem Reports (ETD)

Mitochondrial DNA (mtDNA) analysis has several forensic applications such as criminal investigations, identification of human remains, and missing person investigations. It is also the only type of DNA that is available from certain sample types such as hair shafts. The presence of mtDNA heteroplasmy within and between tissue types can lead to mtDNA sequence differences when comparing samples originating from the same individual. Studies on mtDNA heteroplasmy are increasingly being carried out for their implications in forensic interpretation of mtDNA sequences. Specifically, mtDNA in buccal swabs compared to hair samples from one individual may show differences in sequence due to …

Evaluating Muskellunge (Esox Masquinongy) Catch-And-Release Mortality At Elevated Summer Water Temperature, Ian Taylor Booth

Graduate Theses, Dissertations, and Problem Reports (ETD)

Angling for Muskellunge (Esox masquinongy) has become widespread and increasingly popular throughout the fish’s range. Current management strategies for Muskellunge include high minimum harvest lengths (>1016mm), closed seasons, and catch-and-release regulations. Due to these strategies and angler sentiments, up to 97% of Muskellunge caught today are released by anglers assuming they will live and be caught again in the future. Previous research on catchand-release mortality in Muskellunge has suggested relatively low mortality rates (0%-5%). However, these studies were all conducted within the fish’s thermal optimum and generally at water temperatures25°C during the summer months, representing a need to evaluate …

Genetic Assessment Of Lake Sturgeon Stocking Practices In Two Lake Superior Tributaries, Mary E. Akers

Graduate Theses, Dissertations, and Problem Reports (ETD)

Lake sturgeon were extirpated throughout much of their historic range in the early 1900s due to overharvest, habitat degradation, and reduced water quality. Interagency management plans have worked to identify historic locations and remnant populations suitable for stocking and habitat remediation to rebuild self-sustaining populations of lake sturgeon within their historic range. The St. Louis River population was extirpated in the early 1900s until lake sturgeon were stocked from 1983-2000 from two different source populations (Wolf River, Sturgeon River). Natural reproduction was confirmed in 2011 and F1 generation larvae were collected in 2017 (n = 41) and 2019 (n = …

Population And Migratory Ecology Of Canada Warblers (Cardellina Canadensis) In The Central Appalachian Mountains, West Virginia, Usa, Stephanie H. Augustine

Graduate Theses, Dissertations, and Problem Reports (ETD)

Nearctic-Neotropical migrant birds experience a wide range of environmental conditions throughout their annual cycle; thus, it is particularly challenging to evaluate the spatial factors that may influence population growth. The Canada Warbler (Cardellina canadensis) faces substantial range-wide population declines, but little study has been conducted regarding elements occurring across the entire year that drive demographic rates. The aims of this research are (1) determine the relationship between Canada Warbler population demographic rates and environmental conditions along an elevation gradient in the central Appalachian Mountains and (2) ascertain the nonbreeding season location and migratory routes used by the central …

Effects Of Depression And Stress On Oral Self-Care Among Perinatal Women In Appalachia: A Longitudinal Study, Jeongwi An

Graduate Theses, Dissertations, and Problem Reports (ETD)

Oral health during the perinatal period has an impact on the health of women and their offspring. Oral self-care behaviors are preventive methods that can be employed to maintain or improve oral health but may be compromised during the perinatal period. Identifying factors affecting oral self-care behaviors might provide direction on how to intervene in oral health during and after pregnancy. The purpose of this study was to investigate independent and interactive effects of depression and stress on oral self-care behaviors of perinatal women in Appalachia, given the burden of oral disease in this region. A total of 1,172 women …

Sacramental Ethnicity: Women’S Culture And Vernacular Religion In Twentieth-Century America, Aaron J. Rovan

Graduate Theses, Dissertations, and Problem Reports (ETD)

This project examines the reciprocal and evolving relationship between American women’s culture, vernacular religion, and the social development of American ethnicity. This project focuses on the roles of white ethnic women, both literary and real, in the construction, maintenance, and transmission of ethnic identity. The project highlights the connections between the folkloric performances of vernacular religion and the discursive articulation of ethnicity by focusing on two women writers and two groups of Slovak American women. The fiction of Kate Chopin and Anzia Yezierska illustrates how literary authors bring their contemporary concepts of folklore into their writing. The writings of these …

Feed Conditioning Effects On Enzymes, Amino Acids, And Subsequent Broiler Performance, Elizabeth Ann Lynch

Graduate Theses, Dissertations, and Problem Reports (ETD)

There are many things that can be done to improve broiler performance including, but not limited to, pelleting, proper Lys inclusion, and exogenous enzyme supplementation. Pelleting has the ability to improve feed form, reduce wastage, improve bird performance metrics, and decrease pathogens within the feed. Pathogen reduction can be further reduced by hygienic pelleting practices which include an increase in temperature or retention time within a conditioner or hygieniser. However, hygienic pelleting can degrade valuable AA and enzymes (more specifically for the current thesis research Lys and phytase) and make them unavailable to the animal. Supplementing Lys to account for …

Learning Mathematics While Black In Rural Appalachia: Black Students' Counterstories And Freedom Dreams About Mathematics Education, Sean P. Freeland

Graduate Theses, Dissertations, and Problem Reports (ETD)

This dissertation aims to illuminate and uncover the experiences of Black students’ learning mathematics in rural Appalachia and specifically West Virginia. The focal theory for this study is Critical Race Theory (CRT) which centers the experience of Black students and their voices. The intersection of race, mathematics education, and the context of rural Appalachia contribute to the analysis of these experiences in specific ways. Participants for this study included six Black high school students from various communities throughout West Virginia. Through interviews and mathematical autobiographies, these students shared their experiences learning mathematics across their schooling experiences and also considering their …

Characterization Of Two Krab-Containing Zinc Finger Transcription Factors In Bovine Preimplantation Embryonic Development, Mingxiang Zhang

Graduate Theses, Dissertations, and Problem Reports (ETD)

Oocyte developmental competence or oocyte intrinsic quality describes the capability of oocytes to resume meiosis, cleave and develop to blastocyst stage after fertilization, implant and develop to term in a good health. A growing number of evidences indicate that the majority of embryonic mortality occurs during early embryonic development in different species, including human, horse and cattle primarily due to poor oocyte quality. Maternal effect genes are key aspects of oocyte quality, which are transcribed during the process of oogenesis and folliculogenesis. The maternal factors are accumulated in oocytes, orchestrating various early developmental events including fertilization, epigenetic reprogramming and zygotic …

Machine Learning Based Real-Time Quantification Of Production From Individual Clusters In Shale Wells, Ayodeji Luke Aboaba

Graduate Theses, Dissertations, and Problem Reports (ETD)

Over the last two decades, there has been advances in downhole monitoring in oil and gas wells with the use of Fiber-Optic sensing technology such as the Distributed Temperature Sensing (DTS). Unlike a conventional production log that provides only snapshots of the well performance, DTS provides continuous temperature measurements along the entire wellbore.

Whether by fluid extraction or injection, oil and gas production changes reservoir conditions, and continuous monitoring of downhole conditions is highly desirable. This research study presents a tool for real-time quantification of production from individual perforation clusters in a multi-stage shale well using Artificial Intelligence and Machine …

Application Of Artificial Intelligence For Co2 Storage In Saline Aquifer (Smart Proxy For Snap-Shot In Time), Marwan Mohammed Alnuaimi

Graduate Theses, Dissertations, and Problem Reports (ETD)

In recent years, artificial intelligence (AI) and machine learning (ML) technology have grown in popularity. Smart Proxy Models (SPM) are AI/ML based data-driven models which have proven to be quite crucial in petroleum engineering domain with abundant data, or operations in which large surface/ subsurface volume of data is generated. Climate change mitigation is one application of such technology to simulate and monitor CO2 injection into underground formations.

The goal of the SPM developed in this study is to replicate the results (in terms of pressure and saturation outputs) of the numerical reservoir simulation model (CMG) for CO2 injection into …

Tetramerization Of Stat5 Has Opposing Roles In Governing Autoimmune Pathogenesis, Kelly Lynn Monaghan

Graduate Theses, Dissertations, and Problem Reports (ETD)

Signal transducers and activators of transcription 5 (STAT5A and STAT5B) are members of the STAT protein family. STAT5 plays a critical role in mediating cellular responses following cytokine stimulation. Critical STAT5 signaling is achieved following functional dimerization, which occurs via SH2 domain interactions. The binding of two STAT5 dimers to tandemly linked TTCN₃GAA γ-interferon-activated sequence (GAS) motifs and N-terminal domain interactions, facilitates functional tetramerization. The biological role of STAT5 tetramers has been investigated using the Stat5a-Stat5b N-domain double knock-in (DKI) mouse strain, in which STAT5 tetramers cannot be formed due to substitutions in critical amino acid …

Microvascular Consequences Of Engineered Nanomaterial Inhalation Exposure And Subsequent Reproductive Outcomes, Krista Lee Garner

Graduate Theses, Dissertations, and Problem Reports (ETD)

Nano-titanium dioxide (nano-TiO₂) is a commonly utilized engineered nanomaterial found ubiquitously in consumer products. While benefits of ENM utilization in are undeniable, nanoparticle inhalation has been linked to cardiovascular consequences and altered microvascular responses. Given these outcomes, it is important to explore vulnerable timepoints, such as gestation, as robust vascular adaptations are essential for maternofetal health.

The first aim of this dissertation was to assess myogenic responsiveness following maternal nano-TiO₂ inhalation. Fetal aortic responses were evaluated on gestational day (GD) 20 to assess how exposure may impact the F1 generation. Myogenic responsiveness within the uterine radial arteries …

Frayed Connections: How Long-Term Nitrogen Additions Disrupt Plant-Soil Interactions And The Carbon Cycle Of A Temperate Forest, Brooke A. Eastman

Graduate Theses, Dissertations, and Problem Reports (ETD)

Forests are expected to mitigate some of the negative effects of climate change by sequestering anthropogenic carbon (C) from the atmosphere, but the degree to which they drawn down C will depend on the availability of key nutrients, such as nitrogen (N). There is a fair amount of uncertainty in the future of the forest C sink, mostly owing to the fate of soil organic matter (SOM) and soil heterotrophic respiration to future conditions. In N limited systems, plants allocate a significant amount of their photosynthate belowground for the acquisition of nutrients, but under conditions of chronic N deposition, plants …