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Examining The Relationship Between Stomiiform Fish Morphology And Their Ecological Traits, Mikayla L. Twiss

All HCAS Student Capstones, Theses, and Dissertations

Trait-based ecology characterizes individuals’ functional attributes to better understand and predict their interactions with other species and their environments. Utilizing morphological traits to describe functional groups has helped group species with similar ecological niches that are not necessarily taxonomically related. Within the deep-pelagic fishes, the Order Stomiiformes exhibits high morphological and species diversity, and many species undertake diel vertical migration (DVM). While the morphology and behavior of stomiiform fishes have been extensively studied and described through taxonomic assessments, the connection between their form and function regarding their DVM types, morphotypes, and daytime depth distributions is not well known. Here, three …

High-Resolution Cryo-Em Structure Of The Shigella Virus Sf6 Genome Delivery Tail Machine, Fenglin Li, Chun-Feng David Hou, Ruoyu Yang, Richard Whitehead, Carolyn M. Teschke, Gino Cingolani

Department of Biochemistry and Molecular Biology Faculty Papers

Sf6 is a bacterial virus that infects the human pathogen Shigella flexneri. Here, we describe the cryo–electron microscopy structure of the Sf6 tail machine before DNA ejection, which we determined at a 2.7-angstrom resolution. We built de novo structures of all tail components and resolved four symmetry-mismatched interfaces. Unexpectedly, we found that the tail exists in two conformations, rotated by ~6° with respect to the capsid. The two tail conformers are identical in structure but differ solely in how the portal and head-to-tail adaptor carboxyl termini bond with the capsid at the fivefold vertex, similar to a diamond held over …

The Effects Of Holistic Modalities On Stress Reduction In Nursing Students Attending School During The Pandemic, Rachel Kamp

Honors Theses

Nursing students tend to experience high levels of stress due to the pressures and demands of nursing school, including exams, clinical, and interactions with professors and preceptors (Labrague et al., 2017). Recently, the COVID-19 Pandemic has created additional stressors. Both mind and body modalities (yoga, meditation, deep breathing etc.) and exercise modalities (running, walking, etc.) are some of many health promoting, stress reducing activities that were proven to be effective in reducing stress in nursing students prior to the pandemic. This study aims to determine if these modalities are still effective now, and how nursing faculty supports stress reduction in …

Comprehensive Identification And Expression Analyses Of The Snrk Gene Family In Casuarina Equisetifolia In Response To Salt Stress, Di Ai, Yujiao Wang, Yongcheng Wei, Jie Zhang, Jingxiang Meng, Yong Zhang

Faculty, Staff and Student Publications

Background

Sucrose nonfermenting-1 (SNF1)-related protein kinases (SnRKs) play crucial roles in plant signaling pathways and stress adaptive responses by activating protein phosphorylation pathways. However, there have been no comprehensive studies of the SnRK gene family in the widely planted salt-tolerant tree species Casuarina equisetifolia. Here, we comprehensively analyze this gene family in C. equisetifolia using genome-wide identification, characterization, and profiling of expression changes in response to salt stress.

Results

A total of 26 CeqSnRK genes were identified, which were divided into three subfamilies (SnRK1, SnRK2, and SnRK3). The intron–exon structures and protein‑motif compositions were similar within each subgroup but …

The Restoration Potential Of Offshore Mussel Farming On Degraded Seabed Habitat, D Bridger, Mj Attrill, Bfr Davies, La Holmes, A Cartwright, Se Rees, Lm Cabre, Ev Sheehan

School of Biological and Marine Sciences

The United Kingdom's first large-scale, offshore, long-line mussel farm deployed its first ropes in 2013 in Lyme Bay, southwest United Kingdom, located in an area of seabed that was heavily degraded due to historic bottom-towed fishing. It was hypothesised that due to the artificial structures that accumulate mussels and exclude destructive fishing practices, the seabed could be restored. To assess the restoration potential of the farm and its ecosystem interactions over time, a multi-method, annual monitoring approach was undertaken. Here, we tested the effects of the farm trial stations on the seabed habitat, epifauna and demersal species over 5 years. …

Our Natural World, Jennifer Mattei

Biology Faculty Publications

It’s nothing earth-shattering to say our natural world gives us everything we need to survive, from the oxygen we breathe and the clean water we drink to that apple you are enjoying with your lunch today. We all know this. However, we sometimes fail to appreciate and act on the converse—if we fail to maintain a well-functioning and resilient natural world our future is literally at risk.

What’s more, our reliance on nature goes deeper than the base physical essentials of air, water and food that are required for life. Our bodies—physically, mentally and emotionally—are healthier for their interaction with …

Exploring The Acute Cardiovascular Effects Of Floatation-Rest., M C Flux, Thomas H. Fine, Tate Poplin, Obada Al Zoubi, William A. Schoenhals, Jesse Schettler, Hazem H. Refai, Jessyca Naegele, Colleen Wohlrab, Hung-Wen Yeh, Christopher A. Lowry, Jason C. Levine, Ryan Smith, Sahib S. Khalsa, Justin S. Feinstein

Manuscripts, Articles, Book Chapters and Other Papers

The central nervous system (CNS) exerts a strong regulatory influence over the cardiovascular system in response to environmental demands. Floatation-REST (Reduced Environmental Stimulation Therapy) is an intervention that minimizes stimulation from the environment, yet little is known about the autonomic consequences of reducing external sensory input to the CNS. We recently found that Floatation-REST induces a strong anxiolytic effect in anxious patients while paradoxically enhancing their interoceptive awareness for cardiorespiratory sensations. To further investigate the physiologic nature of this anxiolytic effect, the present study measured acute cardiovascular changes during Floatation-REST using wireless and waterproof equipment that allowed for concurrent measurement …

G-Rich Motifs Within Phosphorothioate-Based Antisense Oligonucleotides (Asos) Drive Activation Of Fxn Expression Through Indirect Effects, Feng Wang, Ezequiel Calvo-Roitberg, Julia M Rembetsy-Brown, Minggang Fang, Jacquelyn Sousa, Zachary J Kartje, Pranathi Meda Krishnamurthy, Jonathan Lee, Michael R Green, Athma A Pai, Jonathan K Watts

Faculty, Staff and Student Publications

Friedreich's ataxia is an incurable disease caused by frataxin (FXN) protein deficiency, which is mostly induced by GAA repeat expansion in intron 1 of the FXN gene. Here, we identified antisense oligonucleotides (ASOs), complementary to two regions within the first intron of FXN pre-mRNA, which could increase FXN mRNA by ∼2-fold in patient fibroblasts. The increase in FXN mRNA was confirmed by the identification of multiple overlapping FXN-activating ASOs at each region, two independent RNA quantification assays, and normalization by multiple housekeeping genes. Experiments on cells with the ASO-binding sites deleted indicate that the ASO-induced FXN activation was driven by …

Pfas Mass Balance, Donovan Vitale

Honors Theses

First-generation, PFOS-dominant Aqueous Film Forming Foam (AFFF) concentrate of approximately 200 gallons was released to the sewer system from the Kalamazoo/Battle Creek International Airport on March 30, 2021. The AFFF release migrated to the Kalamazoo Water Reclamation Plant (KWRP), raising plant effluent above the Department of Environment, Great Lakes, and Energy (EGLE) PFOS water quality standard for a total of 46 days post-spill, although the influent concentrations exhibited sharp declines after only 7 days. By sampling influent, effluent, and biosolids daily, the only known long duration, high-frequency PFAS data set of an accidental AFFF release was generated. This study has …

From Patients To Patents: The Disappearing I Of Innovation, Maggi Robert

St. Mary's Law Journal

The creation of the Mayo/Alice two-step test for patent eligible subject matter flipped the patent world upside down. Following its establishment, invalidation rates soared—particularly in the healthcare sector—impacting patients everywhere. The importance of patents in healthcare innovation and innovation generally has been emphasized as the consequences of this framework are realized.

The United States is no longer seen as a clear leader in innovation, and as a result, the economy is at risk. Start-ups and investors have turned to foreign nations where return on their investments in innovation are protected. This level of uncertainty regarding patents has never been seen …

Endotoxin As A Marker For Water Quality, Anas A. Sattar, Christian R. Good, Margaux Saletes, João Brandão, Simon K. Jackson

School of Biomedical Sciences

Background: Water quality testing is vital to protect human health. Current testing relies mainly on culture-based detection of faecal indicator organisms such as Escherichia coli (E.coli). However, bacterial cultures are a slow process, taking 24–48 h and requiring specialised laboratories and trained personnel. Access to such laboratories is often sparse in developing countries and there are many fatalities deriving from poor water quality. Endotoxin is a molecular component of Gram-negative bacterial cell walls and can be used to detect their presence in drinking water. Method: The current study used a novel assay (BacterisK) to rapidly detect endotoxin in various water …

Design And Synthesis Of Novel Donor-Acceptor-Donor Xanthene-Based Dyes From Heteronuclear Ring Systems For Chemical, Electrochemical, And Biological Sensory Materials, Ishanka Nirmani Rajapaksha

Theses and Dissertations

Conventional xanthene dyes (eg: fluorescein and rhodamine) have their absorptions and emissions in the visible region, which limits their use in cellular imaging. Absorptions and emissions at longer wavelengths allow for low background cellular autofluorescence, deep tissue penetration, and minimum cell damage. Chapter I discusses the background of fluorescent dyes and the importance of near-infrared (NIR) emissive dyes for biological applications. Chapter II is based on the design and synthesis of new xanthene-based NIR I dyes using simple and short synthetic routes. This study used pyrrole and indole as donor molecules and combined them to the xanthene core by the …

Effect Of Spray Droplet Size On Pronamide Control Of Annual Bluegrass (Poa Annua L.) And The Role Of Absorption And Translocation In The Mechanism Of Pronamide Resistance, Martin Ignes

Theses and Dissertations

Annual bluegrass (Poa annua L.) is a problematic weed in turfgrass that has evolved resistance to twelve different herbicide sites of action. The mitotic-inhibiting herbicide pronamide has both pre- and post-emergence activity on susceptible annual bluegrass populations. Still, post-emergence activity may be compromised in some resistant populations due to the lack of root uptake or an unknown foliar resistance mechanism. Spray droplet size may affect foliar and soil deposition of pronamide, thus potentially explaining variation in population control or differential foliar and root uptake. Pronamide, flazasulfuron, and pronamide + flazasulfuron deposition were quantified on annual bluegrass as affected by spray-droplet …

Molecular And Phenotypic Characterization Of Escherichia Coli Isolated From Broiler Chicken Flocks In Mississippi, Priyanka Devkota

Theses and Dissertations

Avian pathogenic Escherichia coli (APEC) is the causative agent of colibacillosis. APEC causes significant economic losses to the poultry industry. In this study, 66 E. coli isolates were collected from broiler flocks across Mississippi and categorized as clinical and non-clinical isolates. Genotypic and phenotypic characterization of virulence factors and antimicrobial resistance profiles of these E. coli were examined. The data disclosed a higher prevalence of virulence genes in clinical isolates than in non-clinical isolates. High differences on the genotypic and phenotypic antimicrobial resistance among clinical and non-clinical isolates were observed. Whole genome sequences of avian E. coli elaborated a diverse …

The Influence Of Taste Sensitivity To 6-N-Propylthiouracil (Prop) On Anthropometric Measurements, Body Composition, And Eating Behaviors Among Female College Students, Abeer Mohammedsharief Alardawi

Theses and Dissertations

Taste is one of the crucial factors that contributes to shaping eating behaviors and is also one of the leading reasons that affects our preferences to like or dislike some foods that mainly have a bitter taste. Variation in bitter phenotype (tasters and non-tasters) could influence diet quality and in turn body weight, which overall influenced health outcomes. The objective of this study was to identify whether bitter taste phenotype status influences anthropometric measurements, body fat percentage, and eating behaviors (liking and intake) in female college students. In this cross-sectional study (n = 86), female college students aged 18 to …

Efficacy Of Antimicrobial Treatments In Vitro And On Fresh Produce Against Selected Foodborne Pathogens And Microbiome Diversity Amongst Blueberry Farms, Angelica Maria Abdallah Ruiz

Theses and Dissertations

This study focused on evaluating the antimicrobial activity of chlorine dioxide (ClO₂) and different plant-based antimicrobials (carvacrol, thymol, and eugenol as bioactive compounds and muscadine extract- ME and blueberry extract- BBE as plant extracts) against selected foodborne pathogens under in vitro conditions and on produce (spinach and blueberries). In addition, bacterial microbiota associated with blueberries and blueberry farm environments from three different regions: Cundinamarca, Colombia; Mississippi, United States; and Guadalajara, Mexico, was determined. Under in vitro conditions, carvacrol and thymol were more effective (lower MICs and MBCs) than eugenol against Salmonella spp., Escherichia coli O157:H7 (MIC=MBC=0.2 mg/ml), and …

Effects Of Soil Management Practices On Water Infiltration And Maize Yield To Improve Mississippi River Valley Alluvial Aquifer Sustainability, Jacob Rix

Theses and Dissertations

Surface sealing and hardpans in loam soils are problematic in the Mid-South U.S. because of intense tillage. Two experiments quantified the effects of soil management practices on infiltration and maize yield in loam soils. The first study measured the impacts of in-row subsoiling frequency × furrow irrigation frequency. In-row subsoiling significantly improved the infiltration of irrigation but not the infiltration of precipitation. In-row subsoiling with low irrigation frequency is optimal to achieve profitable maize yields while encouraging groundwater conservation. In the second study, six soil management treatments were imposed. For single-ring infiltrometer tests, infiltration rates were different between the two …

Seasonal Trends And Sampling Time Of Day On Overall Microbial Population And Indicator Organisms In Catfish Parts And Catfish Processing Environment, Maria Gabriela Hidalgo-Sindoni

Theses and Dissertations

Commercial production of catfish is the leading aquaculture industry in the United States. Production in Mississippi, Louisiana, Alabama, and Arkansas representing 96% of the total catfish sales in the USA. In 2017, the USDA-FSIS added testing of generic Escherichia coli and Enterococcus to the sampling of Siluriformes. The incidence of Escherichia coli in fish and seafood has been associated with possible fecal matter contamination. However, this indicator bacteria could also be a part of the natural microflora of catfish ponds where processing plants collect hybrid catfish. Aerobes, Psychrotrophs, Coliforms, Escherichia coli, and Enterobacteriaceae counts among environmental, liquid and fish …

Understanding The Relationship Among Cool Temperatures, Growth, Metabolism, And Energy Use Of Ictalurus Spp., Abby Vaughn

Theses and Dissertations

Although U.S. commercial catfish aquaculture ponds are in temperate regions and experience cool to cold temperatures during the winter, few studies have investigated the effects of low temperatures on catfish physiological processes. Therefore, growth, metabolism, swimming performance, and blood variables were compared between channel (Ictalurus punctatus), blue (I. furcatus), and hybrid (I. furcatus x I. punctatus) catfish at 10 and 20°C. Accelerometers were also used to evaluate relationships among acceleration, metabolism, and tail beat frequency (TBF) during swimming performance tests. Channel catfish experienced the greatest growth, yet growth was diminished across all fish types at 10°C. Metabolic processes, swimming performance, …

Seasonal Comparison On The Effectiveness Of Control Methods For Microstegium Vimineum In The North Carolina Piedmont, Casey Beam

Theses and Dissertations

Microstegium vimineum, or Japanese stilt grass, is an invasive species that readily outcompetes native vegetation and is of poor forage quality for wildlife. This species is widespread throughout the southeastern United States, including North Carolina. Much of this region is privately owned and there is a gap in the literature providing succinct information about the best methods of treatment, timing of treatment, and effects of treatment on native herbaceous plants in this region. In two parts, this study seeks to address this gap by employing treatments that are easily accessible to landowners at different times during the growing season and …

Latent Profiles Of Psychopathic Traits Among Emerging Adult College Students: Functional And Dysfunctional Psychopathy And Related Outcomes, Lydia J. Stanhope

Theses and Dissertations

Psychopathy research continues to study the adaptability of psychopathic characteristics and differentiate between functional and dysfunctional features. The current study identified latent profiles in emerging adults and compared them across behavioral/cognitive correlates, functional outcomes, aggression types, and also examined gender differences. Results demonstrated that men scored higher across cold-heartedness and fearless dominance profiles, but not self-centered impulsivity. The low psychopathy group had lower proactive aggression than the high psychopathy group; no other differences were observed. Additionally, men and women in the high psychopathy group did not significantly differ regarding experienced outcomes. Lastly, higher psychopathy was not associated with higher proactive …

Combined Effects Of Cyclosporine And Prednisone On T-Cell Cytokine Production In Healthy Dogs, Brittany Moore-Henderson

Theses and Dissertations

Cyclosporine and prednisone are immunosuppressive drugs that are commonly used in combination for the treatment of immune-mediated diseases, and have been shown to individually cause significant suppression of IL-2. Currently, no studies have been performed to determine how a combination of the two drugs would impact suppression of IL-2, and if an additive or synergistic effect on cytokine production could be demonstrated, as in studies of other species. An additive effect of immunosuppression associated with this drug combination could allow clinicians to decrease dosages of drugs, thereby reducing drug costs and minimizing adverse drug side effects. In a cross-over study …

A Fully Coupled Implementation Approach To Study Hydrogen Embrittlement In Metals Using Finite Element Analysis, Sofia Yassir

Theses and Dissertations

Diverse hypotheses are behind the strength degradation in metals due to hydrogen diffusion, leading to a severe, sudden failure. These diverse hypotheses of hydrogen embrittlement include various mechanisms that are responsible for the embrittlement of metals due to hydrogen exposure in their microstructures. This research study focuses on one hydrogen embrittlement mechanism: Hydrogen-Enhanced-Localized-Plasticity (HELP). The HELP is the only single mechanism characterized by promoting localization of plastic flow ahead of the crack by increasing dislocation motion in that region. The current state of the art is a development of a numerical model representing a fully diffusion-mechanical coupled model. This fully …

Surrogate Model-Based Design Optimization Of A Mobile Deployable Structure For Overpressure Load And Vehicular Impact Mitigation, Daniela F. Tellkamp

Theses and Dissertations

Artificial Neural Network (ANN) ensemble and Response Surface Method (RSM) surrogate models were generated from Finite Element (FE) simulations to predict the overpressure load and vehicle impact response of a novel rapidly deployable protective structure. A Non-dominated Sorting Genetic Algorithm-II (NSGA-II) was used in conjunction with the surrogate models to determine structure topology input variable configurations which were suited to produce the optimal balance of minimum mass, minimum rotation angle, minimum displacement, and maximum total length of the deployable structure. The structure was designed to retract into a container, be lightweight to facilitate transportation, and be able to adapt to …

Parent-Child Relationships And Parental Distress As Moderators Between Chronic Illness And Psychological Problems In Emerging Adults., Abigail Kukay

Theses and Dissertations

The current study aimed to better understand how parental functioning and parent-child relationships might moderate the effects of chronic illness on psychological problems in emerging adulthood. Three hypotheses were made: (1) the presence and severity of chronic illness would associate positively with emerging adult psychological problems, (2) parental distress would moderate the effects between chronic illness presence/severity and emerging adulthood psychological problems, and (3) parent-child relationship quality would moderate the effects between chronic illness presence/severity and emerging adult psychological problems. Data analysis consisted of testing interaction effects, pairwise parameter comparisons, and multiple group analysis. The three-way interaction between endorsing a …

Recruiting More U.S. Women Into Engineering Based On Stories From Morocco: A Qualitative Study, Soundouss Sassi

Theses and Dissertations

The objective of this project is to examine the differences between Moroccan and American students with regards to the cultural influences that led them to pursue an engineering degree. Annually since 2015, a partnership between a university in Morocco and MSU allows senior engineering Moroccan students to study at MSU to obtain their graduate degree in aerospace or mechanical engineering. The roughly equal gender representation in most Moroccan cohorts prompted our research question: “How do students from Morocco and the United States describe the cultural reasons that factored into their choice to pursue an engineering degree?” This exploratory qualitative study …

Vegetation And Nutritional Changes Over 20 Years Of White-Tailed Deer Exclusion, Gabrielle Nicole Ripa

Theses and Dissertations

Knowledge of the impacts of white-tailed deer (Odocoileus virginianus; hereafter deer) as dominant herbivores throughout the Southeastern United States of America is lacking. To address this, three paired experimental units of exclosures and controls were constructed in 2000 on three Wildlife Management Areas across Mississippi within the ecoregions of the Upper Coastal Plain, Lower Coastal Plain, and the Mississippi Alluvial Valley. Vegetation was sampled in the summers of 2000, 2005, and 2021 including vegetation structure, canopy coverage, basal area, and species composition. Additionally, in 2005 and 2021, biomass was sampled to determine potential impacts on nutritional carrying capacity. Among the …

Losing Longleaf: Forestry And Conservation In The Southern Coastal Plain, Fraser Livingston

Theses and Dissertations

From the end of Reconstruction to the beginning of World War II, no other ecological change affected as great a part of the southern landscape as the loss of the longleaf pine from the southeastern coastal plain. This dissertation examines the causes and consequences of the species’ disappearance. In the span of just decades, lumber operations and naval stores producers descended upon longleaf pine woodlands with a voracious appetite that greatly contributed to the demise of the pine. However, as this dissertation argues, exploitation by the hands of the timber and turpentine industries was not the only agent that transformed …

Investigation Of The Material Properties Of Poly Pipe Irrigation Tubing For Identifying Performance Characteristics By Thickness, Victor Frank Carey Iv

Theses and Dissertations

Poly Pipe Tubing is widely used in the Mississippi Delta for supplemental irrigation of crops during the growing season. Computerized Hole Selection (CHS) is a tool used to create a prescriptive hole punching map to manage flow and minimize tail-water runoff. Some producers have documented that CHS does not work on their farm. The common thought of failure in poly pipe tubing is the rupturing or splitting of the tubing. This research was based on the thought that failure occurs before the tubing is ruptured and is caused by over pressurization during an irrigation event. Static testing revealed that there …

The Emerging Value Of The Viroid Model In Understanding Plant Responses To Foreign Rnas, Junfei Ma

Theses and Dissertations

RNAs play essential roles in various biological processes. Mounting evidence has demonstrated that RNA subcellular localization and intercellular trafficking govern their functions in coordinating plant growth at the organismal level. Beyond that, plants constantly encounter foreign RNAs (i.e., RNAs from pathogens including viruses and viroids). The subcellular localizations of RNAs are crucial for their function. While numerous types of RNAs (i.e., mRNAs, small RNAs, rRNAs, tRNAs, and long noncoding RNAs) have been found to traffic in a non-cell-autonomous fashion within plants, the underlying regulatory mechanism remains unclear. Viroids are single-stranded circular noncoding RNAs, which entirely rely …