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2022

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Recommendations For Daytime, Evening, And Nighttime Indoor Light Exposure To Best Support Physiology, Sleep, And Wakefulness In Healthy Adults, Timothy M Brown, George Brainard, Christian Cajochen, Charles A Czeisler, John P Hanifin, Steven W Lockley, Robert J Lucas, Mirjam Münch, John B O'Hagan, Stuart N Peirson, Luke L A Price, Till Roenneberg, Luc J M Schlangen, Debra J Skene, Manuel Spitschan, Céline Vetter, Phyllis C Zee, Kenneth P Wright Mar 2022

Recommendations For Daytime, Evening, And Nighttime Indoor Light Exposure To Best Support Physiology, Sleep, And Wakefulness In Healthy Adults, Timothy M Brown, George Brainard, Christian Cajochen, Charles A Czeisler, John P Hanifin, Steven W Lockley, Robert J Lucas, Mirjam Münch, John B O'Hagan, Stuart N Peirson, Luke L A Price, Till Roenneberg, Luc J M Schlangen, Debra J Skene, Manuel Spitschan, Céline Vetter, Phyllis C Zee, Kenneth P Wright

Department of Neurology Faculty Papers

Ocular light exposure has important influences on human health and well-being through modulation of circadian rhythms and sleep, as well as neuroendocrine and cognitive functions. Prevailing patterns of light exposure do not optimally engage these actions for many individuals, but advances in our understanding of the underpinning mechanisms and emerging lighting technologies now present opportunities to adjust lighting to promote optimal physical and mental health and performance. A newly developed, international standard provides a SI-compliant way of quantifying the influence of light on the intrinsically photosensitive, melanopsin-expressing, retinal neurons that mediate these effects. The present report provides recommendations for lighting, …


Amphiphilic Cyclic Peptide [W4Kr5]-Antibiotics Combinations As Broad-Spectrum Antimicrobial Agents, Eman H. M. Mohammed, Sandeep Lohan, Rakesh K. Tiwari, Keykavous Parang Mar 2022

Amphiphilic Cyclic Peptide [W4Kr5]-Antibiotics Combinations As Broad-Spectrum Antimicrobial Agents, Eman H. M. Mohammed, Sandeep Lohan, Rakesh K. Tiwari, Keykavous Parang

Pharmacy Faculty Articles and Research

Linear and cyclic amphiphilic peptides, (W4KR5) and [W4KR5], were evaluated as antibacterial agents against Gram-positive and Gram-negative bacteria, including four multi-drug resistant strains and the corresponding four non-resistant strains. Cyclic peptide [W4KR5] showed higher antibacterial activity than the linear (W4KR5) counterpart. Cyclic [W4KR5] was subjected to combination (physical mixture or covalent conjugation) with meropenem as a model antibiotic to study the impact of the combination on antimicrobial activity. A physical mixture of meropenem and [W4KR5] showed …


Pocket2drug: An Encoder-Decoder Deep Neural Network For The Target-Based Drug Design, W T. Shi, M Singha, G Srivastava, L M. Pu, W T. Shi, M Brylinski Mar 2022

Pocket2drug: An Encoder-Decoder Deep Neural Network For The Target-Based Drug Design, W T. Shi, M Singha, G Srivastava, L M. Pu, W T. Shi, M Brylinski

Faculty Publications

Computational modeling is an essential component of modern drug discovery. One of its most important applications is to select promising drug candidates for pharmacologically relevant target proteins. Because of continuing advances in structural biology, putative binding sites for small organic molecules are being discovered in numerous proteins linked to various diseases. These valuable data offer new opportunities to build efficient computational models predicting binding molecules for target sites through the application of data mining and machine learning. In particular, deep neural networks are powerful techniques capable of learning from complex data in order to make informed drug binding predictions. In …


Astrocyte-Secreted Chordin-Like 1 Regulates Spine Density After Ischemic Injury, Elena Blanco-Suarez, Nicola J Allen Mar 2022

Astrocyte-Secreted Chordin-Like 1 Regulates Spine Density After Ischemic Injury, Elena Blanco-Suarez, Nicola J Allen

Department of Neuroscience Faculty Papers

Ischemic injury occurs when the brain is deprived of blood flow, preventing cells from receiving essential nutrients. The injury core is the brain region directly deprived and is surrounded by the peri-infarct area, the region with recovery potential. In the peri-infarct area neurons undergo acute loss of dendritic spines, which modifies synaptic plasticity and determines neuronal survival. Astrocytes can be protective or detrimental to the ischemic injury response depending on the specific stage, yet we lack clear understanding of the underlying mechanisms. Chordin-like 1 (Chrdl1) is an astrocyte-secreted protein that promotes synaptic maturation and limits experience-dependent plasticity in the mouse …


Geometry Unites Synchrony, Chimeras, And Waves In Nonlinear Oscillator Networks, Roberto C. Budzinski, Tung T. Nguyen, Jacqueline Crossed D Signoàn, Ján Mináč, Terrence J. Sejnowski, Lyle E. Muller Mar 2022

Geometry Unites Synchrony, Chimeras, And Waves In Nonlinear Oscillator Networks, Roberto C. Budzinski, Tung T. Nguyen, Jacqueline Crossed D Signoàn, Ján Mináč, Terrence J. Sejnowski, Lyle E. Muller

Neuroscience Institute Publications

One of the simplest mathematical models in the study of nonlinear systems is the Kuramoto model, which describes synchronization in systems from swarms of insects to superconductors. We have recently found a connection between the original, real-valued nonlinear Kuramoto model and a corresponding complex-valued system that permits describing the system in terms of a linear operator and iterative update rule. We now use this description to investigate three major synchronization phenomena in Kuramoto networks (phase synchronization, chimera states, and traveling waves), not only in terms of steady state solutions but also in terms of transient dynamics and individual simulations. These …


Growth Performance Parameters Of European Sea Bass (Dicentrarchus Labrax) Cultured In Marine Water Farm And Fed Commercial Diets Of Different Protein Levels, Basma Saleem, Ola Orma, Amr Abd El-Wahab, Tarek Ibrahim Mar 2022

Growth Performance Parameters Of European Sea Bass (Dicentrarchus Labrax) Cultured In Marine Water Farm And Fed Commercial Diets Of Different Protein Levels, Basma Saleem, Ola Orma, Amr Abd El-Wahab, Tarek Ibrahim

Mansoura Veterinary Medical Journal

Objective: To evaluate the growth performance and whole-body composition of growing E. Sea bass cultured in marine water farm and fed commercial fish diets containing 42.3% to 39.60% crude protein (CP) and 17.4 % to 17.8 % fat. Design: Randomized controlled study Samples: Five ponds out of the 8-ponds open marine water farm of 12 Feddans were used. Procedures: Each pond (120 m length x 40 m width x 1.5 m depth) stocked with 5500 growing E. Sea bass of about 25 g initial mean body weight. Fish feeding and management were followed up for 6 months (June to November …


Glutamic-Oxaloacetic Transaminase 2 (Got2) Reverse Reaction Could Act As A Possible Relief Valve For Mitochondrial Substrate Overload Induced By Glucocorticoids, Humza Pirzadah Mar 2022

Glutamic-Oxaloacetic Transaminase 2 (Got2) Reverse Reaction Could Act As A Possible Relief Valve For Mitochondrial Substrate Overload Induced By Glucocorticoids, Humza Pirzadah

Honors Capstones

No abstract provided.


Natural Phaeosphaeride A Derivatives Overcome Drug Resistance Of Tumor Cells And Modulate Signaling Pathways, Victoria Abzianidze, Natalia Moiseeva, Diana Suponina, Sofya Zakharenkova, Nadezhda Rogovskaya, Lidia Laletina, Alvin A. Holder, Denis Krivorotov, Alexander Bogachenkov, Alexander Garabadzhiu, Anton Ukolov, Vyacheslav Kosorukov Mar 2022

Natural Phaeosphaeride A Derivatives Overcome Drug Resistance Of Tumor Cells And Modulate Signaling Pathways, Victoria Abzianidze, Natalia Moiseeva, Diana Suponina, Sofya Zakharenkova, Nadezhda Rogovskaya, Lidia Laletina, Alvin A. Holder, Denis Krivorotov, Alexander Bogachenkov, Alexander Garabadzhiu, Anton Ukolov, Vyacheslav Kosorukov

Chemistry & Biochemistry Faculty Publications

n the present study, natural phaeosphaeride A (PPA) derivatives are synthesized. Anti-tumor studies are carried out on the PC3, K562, HCT-116, THP-1, MCF-7, A549, NCI-H929, Jurkat, and RPMI8226 tumor cell lines, and on the human embryonic kidney (HEK293) cell line. All the compounds synthesized turned out to have better efficacy than PPA towards the tumor cell lines listed. Among them, three compounds exhibited an ability to overcome the drug resistance of tumor cells associated with the overexpression of the P-glycoprotein by modulating the work of this transporter. Luminex xMAP technology was used to assess the effect of five synthesized compounds …


Predation In Many Dimensions: Spatial Context Is Important For Meaningful Functional Response Experiments, Steven A. Juliano, Jonah A. Goughnour, Geoffrey D. Ower Mar 2022

Predation In Many Dimensions: Spatial Context Is Important For Meaningful Functional Response Experiments, Steven A. Juliano, Jonah A. Goughnour, Geoffrey D. Ower

Faculty Publications – Biological Sciences

For simplicity and to minimize variation, functional response experiments frequently use environments of simple physical structure and small size. Less attention is paid to similarity of the experimental environment to the natural environment where predation occurs. Assumptions about predator and prey use of space are often implied in the choice of experimental environment. We illustrate how these assumptions may affect conclusions with an experiment testing how arena size affects a functional response. Toxorhynchites rutilus preyed upon larval Culex restuans in containers differing in volume by 15x, but spanning a similar range of prey/liter. The most plausible Type II model included …


Neuroscience And Criminal Justice: Time For A "Copernican Revolution"?, John S. Callender Mar 2022

Neuroscience And Criminal Justice: Time For A "Copernican Revolution"?, John S. Callender

William & Mary Law Review

The main purpose of this Article is to argue for a fundamental change in the conceptual orientation of criminal justice: from one based on concepts such as free will, desert, and moral responsibility, to one based on empirical science. The Article describes research in behavioral genetics, acquired brain injuries, and psychological traumatization in relation to criminality. This research has reached a level of development at which the traditional approach to criminality is no longer tenable and should be discarded. I argue that mental health legislation provides a model that could be adapted and applied to offenders.


Cheminformatics Application In The Phytochemical And Biological Study Of Eucalyptus Globulus L. Bark As A Potential Hepatoprotective Drug, Khaled Nematallah, Sahar Elmekkawy, Maha Abdollah, Mohamed Elmazar, Essam Abdel Sattar, Meselhy R. Meselhy Feb 2022

Cheminformatics Application In The Phytochemical And Biological Study Of Eucalyptus Globulus L. Bark As A Potential Hepatoprotective Drug, Khaled Nematallah, Sahar Elmekkawy, Maha Abdollah, Mohamed Elmazar, Essam Abdel Sattar, Meselhy R. Meselhy

Pharmacy

Natural products are considered as a good source of antifibrotic agents, but identifying and isolating bioactive molecule(s) is still challenging. Fortunately, numerous computational techniques have evolved to save time and efforts in this field. The aim of the current study was to utilize several cheminformatics software to study the chemical and biological features of the bark of Eucalyptus globulus cultivated in Egypt. Sirius software, with the aid of online databases, was used to process liquid chromatography–mass spectrometry (LC–MS) chemical profiling and predict precise molecular formulae, chemical classes, and structures. Accordingly, 37 compounds were tentatively identified, including 15 reported here for …


Ghost Mitochondria Drive Metastasis Through Adaptive Gcn2/Akt Therapeutic Vulnerability, Jagadish C Ghosh, Michela Perego, Ekta Agarwal, Irene Bertolini, Yuan Wang, Aaron R Goldman, Hsin-Yao Tang, Andrew V Kossenkov, Catherine J Libby, Lucia R Languino, Edward F Plow, Annamaria Morotti, Luisa Ottobrini, Marco Locatelli, David W Speicher, M Cecilia Caino, Joel Cassel, Joseph M Salvino, Marie E Robert, Valentina Vaira, Dario C Altieri Feb 2022

Ghost Mitochondria Drive Metastasis Through Adaptive Gcn2/Akt Therapeutic Vulnerability, Jagadish C Ghosh, Michela Perego, Ekta Agarwal, Irene Bertolini, Yuan Wang, Aaron R Goldman, Hsin-Yao Tang, Andrew V Kossenkov, Catherine J Libby, Lucia R Languino, Edward F Plow, Annamaria Morotti, Luisa Ottobrini, Marco Locatelli, David W Speicher, M Cecilia Caino, Joel Cassel, Joseph M Salvino, Marie E Robert, Valentina Vaira, Dario C Altieri

Department of Cancer Biology Faculty Papers

Cancer metabolism, including in mitochondria, is a disease hallmark and therapeutic target, but its regulation is poorly understood. Here, we show that many human tumors have heterogeneous and often reduced levels of Mic60, or Mitofilin, an essential scaffold of mitochondrial structure. Despite a catastrophic collapse of mitochondrial integrity, loss of bioenergetics, and oxidative damage, tumors with Mic60 depletion slow down cell proliferation, evade cell death, and activate a nuclear gene expression program of innate immunity and cytokine/chemokine signaling. In turn, this induces epithelial-mesenchymal transition (EMT), activates tumor cell movements through exaggerated mitochondrial dynamics, and promotes metastatic dissemination in vivo. In …


Live-Dead Assay On Unlabeled Cells Using Phase Imaging With Computational Specificity, Chenfei Hu, Shenghua He, Young Jae Lee, Yuchen He, Edward M Kong, Hua Li, Mark A Anastasio, Gabriel Popescu Feb 2022

Live-Dead Assay On Unlabeled Cells Using Phase Imaging With Computational Specificity, Chenfei Hu, Shenghua He, Young Jae Lee, Yuchen He, Edward M Kong, Hua Li, Mark A Anastasio, Gabriel Popescu

Open Access Publications

Existing approaches to evaluate cell viability involve cell staining with chemical reagents. However, the step of exogenous staining makes these methods undesirable for rapid, nondestructive, and long-term investigation. Here, we present an instantaneous viability assessment of unlabeled cells using phase imaging with computation specificity. This concept utilizes deep learning techniques to compute viability markers associated with the specimen measured by label-free quantitative phase imaging. Demonstrated on different live cell cultures, the proposed method reports approximately 95% accuracy in identifying live and dead cells. The evolution of the cell dry mass and nucleus area for the labeled and unlabeled populations reveal …


From Aristotle To Wunderkammer: The Development Of Entomology And Insect Collections, Erica E. Fischer Feb 2022

From Aristotle To Wunderkammer: The Development Of Entomology And Insect Collections, Erica E. Fischer

Grand Valley Journal of History

This paper analyzes the development of insect classification and the shift from the realm of the amateur naturalist to professional scientific pursuit. While earlier historians of science have explored the field of entomology in specific eras, this paper explores continuity and change in the study of insects and natural history collections from the ancient world to the 20th century. Period entomology texts, modern entomology and history of science journals, entomological displays and preserved specimens, and histories of entomology reveal that, though entomology developed as a private pursuit for the wealthy, it came to represent an ideal starting place for …


Development Of Zinc Oxide/Hydroxyapatite/Poly(D,L-Lactic Acid) Fibrous Scaffold For Tissue Engineering Applications, Victoria Padilla-Gainza, Heriberto Rodríguez-Tobías, Graciela Morales, Antonio Ledezma-Pérez, Carmen Alvarado-Canché, Raúl Loera-Valencia, Cristóbal Rodríguez, Robert Gilkerson, Carlos Trevino De Leo, Karen Lozano Feb 2022

Development Of Zinc Oxide/Hydroxyapatite/Poly(D,L-Lactic Acid) Fibrous Scaffold For Tissue Engineering Applications, Victoria Padilla-Gainza, Heriberto Rodríguez-Tobías, Graciela Morales, Antonio Ledezma-Pérez, Carmen Alvarado-Canché, Raúl Loera-Valencia, Cristóbal Rodríguez, Robert Gilkerson, Carlos Trevino De Leo, Karen Lozano

Mechanical Engineering Faculty Publications

Scaffolds based on polymeric fibers represent an engaging biomedical device due to their particular morphology and similarity with extracellular matrices. The biggest challenge to use fibrous materials in the biomedical field is related to their favorable platform for the adhesion of pathogenic microorganisms. Therefore, their optimum performance not only depends on their bioactive potential but also on their antimicrobial properties. The aim of this work was the design of antimicrobial (zinc oxide, ZnO) and bioactive (hydroxyapatite, Hap) fibrous materials using poly(D, L-lactic acid) (PDLLA) as the polymer fiber substrate. Fiber based composite scaffolds were developed using the Forcespinning® technique. For …


Anty 418:.01: Evolution And Genetic Variation In Human Populations, Meradeth H. Snow Feb 2022

Anty 418:.01: Evolution And Genetic Variation In Human Populations, Meradeth H. Snow

University of Montana Course Syllabi, 2021-2025

No abstract provided.


Effects Of Placebo Administration On Immune Mechanisms And Relationships With Central Endogenous Opioid Neurotransmission, Alan Prossin, Alisa Koch, Phillip Campbell, Geoffroy Laumet, Christian S Stohler, Robert Dantzer, Jon-Kar Zubieta Feb 2022

Effects Of Placebo Administration On Immune Mechanisms And Relationships With Central Endogenous Opioid Neurotransmission, Alan Prossin, Alisa Koch, Phillip Campbell, Geoffroy Laumet, Christian S Stohler, Robert Dantzer, Jon-Kar Zubieta

Faculty, Staff and Student Publications

Behavioral conditioning and expectation can have profound impact on animal and human physiology. Placebo, administered under positive expectation in clinical trials, can have potent effects on disease pathology, obscuring active medications. Emerging evidence suggests placebo-responsive neurotransmitter systems (e.g., endogenous opioid) regulate immune function by manipulating inflammatory proteins including IL-18, a potent pro-inflammatory, nociceptive cytokine implicated in pathophysiology of various diseases. Validation that neuroimmune interactions involving brain μ-opioid receptor (MOR) activity and plasma IL-18 underlie placebo analgesic expectation could have widespread clinical applications. Unfortunately, current lack of mechanistic clarity obfuscates clinical translation. To elucidate neuroimmune interactions underlying placebo analgesia, we exposed …


Sex-Specific Aging In Animals: Perspective And Future Directions, Anne M. Bronikowski, Richard P. Meisel, Peggy R. Biga, James R. Walters, Judith E. Mank, Erica Larschan, Gerald S. Wilkinson, Nicole Valenzuela, Ashley Mae Conard, João Pedro De Magalhães, Jingyue (Ellie) Duan, Amy E. Elias, Tony Gamble, Rita M. Graze, Kristin E. Gribble, Jill A. Kreiling, Nicole C. Riddle Feb 2022

Sex-Specific Aging In Animals: Perspective And Future Directions, Anne M. Bronikowski, Richard P. Meisel, Peggy R. Biga, James R. Walters, Judith E. Mank, Erica Larschan, Gerald S. Wilkinson, Nicole Valenzuela, Ashley Mae Conard, João Pedro De Magalhães, Jingyue (Ellie) Duan, Amy E. Elias, Tony Gamble, Rita M. Graze, Kristin E. Gribble, Jill A. Kreiling, Nicole C. Riddle

Biological Sciences Faculty Research and Publications

Sex differences in aging occur in many animal species, and they include sex differences in lifespan, in the onset and progression of age-associated decline, and in physiological and molecular markers of aging. Sex differences in aging vary greatly across the animal kingdom. For example, there are species with longer-lived females, species where males live longer, and species lacking sex differences in lifespan. The underlying causes of sex differences in aging remain mostly unknown. Currently, we do not understand the molecular drivers of sex differences in aging, or whether they are related to the accepted hallmarks or pillars of aging or …


New Tetra-Dentate Schiff Base Ligand N2o2 And Its Complexes With Some Of Metal Ions: Preparation, Identification, And Studying Their Enzymatic And Biological Activities, Khitam J. Nabhan, Amer S. Mahdi, Basim H. Al-Zaidi, Ahmad H. Ismail, Zaizafoone N. Nasif Feb 2022

New Tetra-Dentate Schiff Base Ligand N2o2 And Its Complexes With Some Of Metal Ions: Preparation, Identification, And Studying Their Enzymatic And Biological Activities, Khitam J. Nabhan, Amer S. Mahdi, Basim H. Al-Zaidi, Ahmad H. Ismail, Zaizafoone N. Nasif

Baghdad Science Journal

In present work, new tetra-dentate ligand, titled 3,5-bis ((E)-5-Bromo-2-hydroxy benzylidene amino) benzoic acid (H3L), was prepared via an acid-catalyzed condensation process. New four metallic ligand complexes with Co(II), Ni(II), Cu(II) and Zn(II) ions, were also prepared from the refluxing of equivalent moles. Ligand's structure and its complexes; were confirmed by numerous characterization methods, including Ultraviolet-Visible, Infrared, Mass Spectrometer, 1H and 13C Nuclear Magnetic Resonance spectra, atomic absorption, magnetic moments, and molar conductivity measurements. The results of the spectroscopic analyzes proved that the prepared ligand acts as tetradentate bi-ionic ligand and it was bonded to the metal ions by two nitrogen …


Essential Oils From Artemisia Herba Alba Asso., Maticaria Recutita L., And Dittrichia Viscosa L. (Asteraceae): A Promising Source Of Eco-Friendly Agents To Control Callosobruchus Maculatus Fab. Warehouse Pest, Allali Aimad, Mohammed Bourhia, Hadin Hana, Rezouki Sanae, Ahmad Mohammad Salamatullah, Walid Soufan, Hail Z. Rihan, Lahcen Ouahmane, El Abdali Youness, Eloutassi Noureddine, Fadli Mohamed Jan 2022

Essential Oils From Artemisia Herba Alba Asso., Maticaria Recutita L., And Dittrichia Viscosa L. (Asteraceae): A Promising Source Of Eco-Friendly Agents To Control Callosobruchus Maculatus Fab. Warehouse Pest, Allali Aimad, Mohammed Bourhia, Hadin Hana, Rezouki Sanae, Ahmad Mohammad Salamatullah, Walid Soufan, Hail Z. Rihan, Lahcen Ouahmane, El Abdali Youness, Eloutassi Noureddine, Fadli Mohamed

School of Biological and Marine Sciences

Callosobruchus maculatus (Fab.) (C. maculatus) is one of the major pests of legume seeds in storage causing significant damage, leading to food insecurity and low income for farmers. This work was planned to develop eco-friendly agents from essential oils of Artemisia herba alba Asso. (AEO), Maticaria Recutita L. (MEO), and Dittrichia Viscosa L. (DEO) to control C. maculatus. To achieve this goal, essential oils (EOs) were extracted by hydro-distillation using Clevenger apparatus before being characterized by GC-MS. EOs were used for testing purposes using three different tests, namely, inhalation toxicity, contact toxicity, and repellency tests. GC-MS analysis of EOs showed …


Colour, Light, And Materiality: Biophilic Interior Design Presence In Research And Practice, Beth Mcgee, Nam-Kyu Park Jan 2022

Colour, Light, And Materiality: Biophilic Interior Design Presence In Research And Practice, Beth Mcgee, Nam-Kyu Park

Interiority

The biophilic design hypothesis uses nature-based environmental design for optimising people’s health and well-being. Stephen Kellert in 2008 developed a list of biophilic attributes that was further refined in the Biophilic Interior Design Matrix (BID-M) to specifically support the interior application of biophilic design for health and well-being. The present study further investigates biophilic interior design using the BID-M language and the key interior design components colour, light, and materiality. The first part of the study reviewed four decades of literature related to biophilia and colour, light, and materiality to investigate a total of 19 publications. The second part of …


Nanostring Digital Molecular Profiling Of Protein And Microrna In Rhabdomyosarcoma., Atif Ahmed, Midhat S. Farooqi, Sahibu Sultan M Habeebu, Elizabeth Gonzalez, Terrie Flatt, Ashley L. Wilson, Frederic G. Barr Jan 2022

Nanostring Digital Molecular Profiling Of Protein And Microrna In Rhabdomyosarcoma., Atif Ahmed, Midhat S. Farooqi, Sahibu Sultan M Habeebu, Elizabeth Gonzalez, Terrie Flatt, Ashley L. Wilson, Frederic G. Barr

Manuscripts, Articles, Book Chapters and Other Papers

Purpose: Rhabdomyosarcoma (RMS) exhibits a complex prognostic algorithm based on histologic, biologic and clinical parameters. The embryonal (ERMS) and spindle cell-sclerosing RMS (SRMS) histologic subtypes warrant further studies due to their heterogenous genetic background and variable clinical behavior. NanoString digital profiling methods have been previously highlighted as robust novel methods to detect protein and microRNA expression in several cancers but not in RMS.

Methods/patients: To identify prognostic biomarkers, we categorized 12 ERMS and SRMS tumor cases into adverse (n = 5) or favorable (n = 7) prognosis groups and analyzed their signaling pathways and microRNA profiles. The digital …


Mosquito Edge: An Edge-Intelligent Real-Time Mosquito Threat Prediction Using An Iot-Enabled Hardware System, Shyam Polineni, Om Shastri, Avi Bagchi, Govind Gnanakumar, Sujay Rasamsetti, Prabha Sundaravadivel Jan 2022

Mosquito Edge: An Edge-Intelligent Real-Time Mosquito Threat Prediction Using An Iot-Enabled Hardware System, Shyam Polineni, Om Shastri, Avi Bagchi, Govind Gnanakumar, Sujay Rasamsetti, Prabha Sundaravadivel

Electrical Engineering Faculty Publications and Presentations

Species distribution models (SDMs) that use climate variables to make binary predictions are effective tools for niche prediction in current and future climate scenarios. In this study, a Hutchinson hypervolume is defined with temperature, humidity, air pressure, precipitation, and cloud cover climate vectors collected from the National Oceanic and Atmospheric Administration (NOAA) that were matched to mosquito presence and absence points extracted from NASA's citizen science platform called GLOBE Observer and the National Ecological Observatory Network. An 86% accurate Random Forest model that operates on binary classification was created to predict mosquito threat. Given a location and date input, the …


Clinical Performance Of Methylation As A Biomarker For Cervical Carcinoma In Situ And Cancer Diagnosis: A Worldwide Study, Cristiana Banila, Attila T. Lorincz, Dorota Scibior-Bentkowska, Gary M. Clifford, Birhanu Kumbi, Dereje Beyene, Cosette M. Wheeler, Kate Cuschieri, Jack Cuzick, Belinda Nedjai Jan 2022

Clinical Performance Of Methylation As A Biomarker For Cervical Carcinoma In Situ And Cancer Diagnosis: A Worldwide Study, Cristiana Banila, Attila T. Lorincz, Dorota Scibior-Bentkowska, Gary M. Clifford, Birhanu Kumbi, Dereje Beyene, Cosette M. Wheeler, Kate Cuschieri, Jack Cuzick, Belinda Nedjai

Pathology Research and Scholarship

The shift towards primary human papillomavirus (HPV)-based screening has necessitated the search for a secondary triage test that provides sufficient sensitivity to detect high-grade cervical intraepithelial neoplasia (CIN) and cancer, but also brings an improved specificity to avoid unnecessary clinical work and colposcopy referrals. We evaluated the performance of the previously described DNA-methylation test (S5) in detecting CIN3 and cancers from diverse geographic settings in high-, medium- and low-income countries, using the cut-off of 0.80 and exploratory cut-offs of 2.62 and 3.70. Assays were performed using exfoliated cervical specimens (n = 808) and formalin-fixed biopsies (n = 166) from women …


Fbxw7-Mediated Erk3 Degradation Regulates The Proliferation Of Lung Cancer Cells, Hyun-Jung An, Cheol-Jung Lee, Ga-Eun Lee, Youngwon Choi, Dohyun Jeung, Weidong Chen, Hye Suk Lee, Han Chang Kang, Joo Young Lee, Dae Joon Kim Jan 2022

Fbxw7-Mediated Erk3 Degradation Regulates The Proliferation Of Lung Cancer Cells, Hyun-Jung An, Cheol-Jung Lee, Ga-Eun Lee, Youngwon Choi, Dohyun Jeung, Weidong Chen, Hye Suk Lee, Han Chang Kang, Joo Young Lee, Dae Joon Kim

School of Medicine Publications

Extracellular signal-regulated kinase 3 (ERK3) is an atypical member of the mitogen-activated protein kinase (MAPK) family, members of which play essential roles in diverse cellular processes during carcinogenesis, including cell proliferation, differentiation, migration, and invasion. Unlike other MAPKs, ERK3 is an unstable protein with a short half-life. Although deubiquitination of ERK3 has been suggested to regulate the activity, its ubiquitination has not been described in the literature. Here, we report that FBXW7 (F-box and WD repeat domain-containing 7) acts as a ubiquitination E3 ligase for ERK3. Mammalian two-hybrid assay and immunoprecipitation results demonstrated that ERK3 is a novel binding partner …


Bis-Amino Acid Based Compound And Use Thereof, George Gokel, Joseph W. Meisel, Mohit B. Patel Jan 2022

Bis-Amino Acid Based Compound And Use Thereof, George Gokel, Joseph W. Meisel, Mohit B. Patel

UMSL Patents

Compositions comprising bis(tryptophan) derivatives are provided that act as antimicrobials. Also provided are methods for reversing antibiotic resistance in a bacterium, or recovering or enhancing antimicrobial activity of an antibiotic against a variety of microbes, by co-administration with a bis(tryptophan) derivative.


Phytochemical Investigation Of Egyptian Riverhemp: A Potential Source Of Antileukemic Metabolites, Shimaa M. Abdelgawad, Mona H. Hetta, Mohamed A. Ibrahim, Premalatha Balachandran Jan 2022

Phytochemical Investigation Of Egyptian Riverhemp: A Potential Source Of Antileukemic Metabolites, Shimaa M. Abdelgawad, Mona H. Hetta, Mohamed A. Ibrahim, Premalatha Balachandran

Faculty and Student Publications

As part of our research group's continuous efforts to find alternative treatments for cancer, the aqueous ethanol extract of Sesbania sesban L. Merr. (SS, Egyptian riverhemp) demonstrated an antileukemic activity against K562 cell line. Bioguided fractionation of SS leaves hydroethanolic extract resulted in the isolation of one new compound (33) named as hederatriol 3-O-β-D-glucuronic acid methyl ester as well as 34 known compounds. Seven compounds ((34), (22), (20), (24), (21), (19), and (35)) showed high antiproliferative effects (IC50 = 22.3, 30.8, 31.3, 33.7, 36.6, 37.5, and 41.5 μM, respectively), while four compounds ((32), (5), (29), and (1)) showed milder activities …


Stylosanthes Scabra - Environmental Weed Risk Assessment 2022, Department Of Primary Industries And Regional Development, Western Australia Jan 2022

Stylosanthes Scabra - Environmental Weed Risk Assessment 2022, Department Of Primary Industries And Regional Development, Western Australia

Environmental Weed Risk Assessments

Introducing new plants to an area may have both positive and negative effects on the environment, economy and community. To minimise the negative environmental impact of introducing new agricultural species, DPIRD conducts a risk assessment procedure based on widely accepted scientific standards. This report assesses Shrubby stylo (Stylosanthes scabra). Shrubby stylo (Stylosanthes scabra) is a shrubby, perennial legume, erect to suberect, with strong, woody stems, usually densely hairy and viscid, making them sticky under hot, dry conditions. It is a widespread and variable species, originating from South America and the Caribbean (Sousa Costa and Ferreira 1984) with two ecotypes identified …


Generalization Of The Ratio Of Minimized Kullback- Leibler Divergence Discrimination Technique To Bivariate Marshall-Olkin Family, Hanan. M. Aly, Ola. A. Abuelamayem Jan 2022

Generalization Of The Ratio Of Minimized Kullback- Leibler Divergence Discrimination Technique To Bivariate Marshall-Olkin Family, Hanan. M. Aly, Ola. A. Abuelamayem

Journal of Statistics Applications & Probability

Different bivariate lifetime distributions are used to analyze lifetime data and study the reliability of the products. Sometimes, we find more than one distribution that fit the data well. In this case, we should select the best one. That is why the discriminant analysis is used. In literature, there is only one method used for bivariate lifetime distributions, which is the likelihood ratio test. In this paper, we try to generalize the ratio of minimized Kullback-Leibler divergence to be used as a discrimination method in the bivariate case and it could be applied on the bivariate Marsall-Olkin family. we will …


Insect Cell Expression And Purification Of Recombinant Sars-Cov-2 Spike Proteins That Demonstrate Ace2 Binding, Lucas R. Struble, Audrey L. Smith, William E. Lutz, Gabrielle Grubbs, Satish Sagar, Kenneth W. Bayles, Prakash Radhakrishnan, Surender Khurana, Dalia El-Gamal, Gloria E. O. Borgstahl Jan 2022

Insect Cell Expression And Purification Of Recombinant Sars-Cov-2 Spike Proteins That Demonstrate Ace2 Binding, Lucas R. Struble, Audrey L. Smith, William E. Lutz, Gabrielle Grubbs, Satish Sagar, Kenneth W. Bayles, Prakash Radhakrishnan, Surender Khurana, Dalia El-Gamal, Gloria E. O. Borgstahl

Journal Articles: Pathology and Microbiology

The COVID-19 pandemic caused by SARS-CoV-2 infection has led to socio-economic shutdowns and the loss of over 5 million lives worldwide. There is a need for the identification of therapeutic targets to treat COVID-19. SARS-CoV-2 spike is a target of interest for the development of therapeutic targets. We developed a robust SARS-CoV-2 S spike expression and purification protocol from insect cells and studied four recombinant SARS-CoV-2 spike protein constructs based on the original SARS-CoV-2 sequence using a baculovirus expression system: a spike protein receptor-binding domain that includes the SD1 domain (RBD) coupled to a fluorescent tag (S-RBD-eGFP), spike ectodomain coupled …