Digital Commons Network^™

Computational Techniques For Elucidating Plant-Pathogen Interactions: A Case Study On Citrus-Hlb Interactome, Cristian D. Loaiza

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Citrus fruit industry in the United States has been affected during the last two decades because of the outbreak of the citrus greening disease, also known as Huanglongbing (HLB). Many people and organizations are working in therapeutics to help mitigate the impact of this disease, unfortunately there is not a cure yet. There are many mechanisms that needs to be understood about this disease, especially at the molecular level. Not only HLB, but many other infectious diseases are controlled by the interaction of proteins from the host (Citrus in this case) and from the pathogen that causes the disease. …

Predator Defense And Host Selection Behavior Of Billbugs (Coleoptera: Dryophthoridae), Desireè M. Wickwar

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Billbugs are a complex of weevils that feed on the roots of turfgrass, causing severe damage to the plants. These pests are traditionally managed with applications of insecticides. However, there is a need for non-chemical management tools. Here I investigate billbug behavior in relation to two potential avenues for more sustainable management: using resident predators to suppress billbugs (Chapter II) and selecting specific turfgrasses that resist billbug damage (Chapter III). In Chapter II, I investigate the effects of predator presence and cues associated with their presence on billbug behavior. Though resident predators contribute very little to billbug suppression through directly …

Seeding Rate, Nitrogen Fertilzer, And Cutting Timing Effects On Teff Forage Yield And Nutritive Value, Michael C. Laca

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Teff [Eragostis tef (Zucc.) Trotter] is a relatively new forage gaining popularity in the United States; however, information regarding agronomic production practices is lacking. This study was conducted to determine the combination of seeding rate, fertilization, and harvest timing to optimize teff dry-matter yield (DMY) and nutritive value. Four seeding rates (2, 5, 8, and 11 lb/acre), four nitrogen (N) fertilizer rates (0, 25, 50, and 100 lb/acre), and two harvest strategies [boot stage (2-cut) and full seed-head stage (1-cut; stockpiled)] were evaluated in 2010 and 2011 in Kaysville, UT and Yerington, NV. The effects of harvest (1- vs …

Phytochrome Physiology And Plant Perception Of Far-Red Photons, Paul Kusuma

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Photons are the primary energy source for most life on Earth, as they drive photosynthesis, a process that turns the CO₂ in air into food. One crucial parameters for the optimization of growth is leaf area, which determines the ability of a plant to capture photons for photosynthesis. In order to gain access to photons in shaded environments, plants have evolved unique sensors, called photoreceptors, which respond to changes in the color and intensity of light.

Far-red photons (photons at the edge of human vision that appear as dim red light) hold particular promise in regulating plant shape and …

Neurotrophic Factor Genetics Of Cognitive Progression And Neuropsychiatric Symptom Presentation In Alzheimer's Disease And Related Disorders, Joshua Matthew Matyi

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Cache County Study on Memory in Aging (CCSMA) and subsequent Dementia Progression Study (DPS) were two research studies that took place in Cache County, Utah. These studies followed 5092 participants aged 65 or older for approximately 12 years and looked at risk and protective factors for dementia, including Alzheimer’s disease. One of the factors investigated was genes that are known to influence brain health, such as brain-derived neurotrophic factor (BDNF), a protein found in the brain that helps with the survival of brain cells.

BDNF genes have been shown to be associated with Alzheimer’s disease and related dementia (ADRD) …

Characterization And Immobilization Of Thermophilic Lipases For The Interesterification Of Soybean Oil, Teif A. Najm

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Lipases are currently used in food technology for the modification of fats and oils. Lipase can synthesize, hydrolyze, and rearrange fatty acids, thus, resulting in their extensive use in industrial applications. The thermal stability of lipase is an essential characteristic for this application. Thermophilic bacteria are an important source for producing thermostable lipases because of their tolerance to high heat. Lipolytic enzymes can be purified using several purification methods, but these purification processes are often expensive and complex. Results from this study showed that lipases can be extract from thermophilic bacteria (Geobacillius stearothermophilus (GS) and Anoxybacillus flavithermus (AF)). Molecular …

Extended Maternal And Paternal Hereditary Risk For Alzheimer’S Disease Examined By Sex In A Sample Of Community Dwelling Older Adults In Cache County, Utah, Elizabeth K. Vernon

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

More than 6 million Americans are living with Alzheimer’s Disease (AD) and this number is expected to rise and surpass 12.7million individuals by the year 2050. Currently there is no cure for the disease and prior research has focused on prevention by identifying risk factors. Known risk factors associated with AD include older age, female sex, genetics, family history of AD, genotype of the apolipoprotein E (APOE) gene, and vascular risk factors (e.g., cholesterol, hypertension) and conditions or events (e.g., CHF, stroke). The effects of many of the above risk factors have differed in men and women, but few studies …

Determination Of The Structure, Function, And Mechanism Of Type Iv Crispr-Cas Prokaryotic Defense Systems, Hannah Nicole Taylor

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Bacteria are under constant threat of invasion by bacteriophage (viruses which infect bacteria). To prevent bacteriophage from entering and overtaking the bacteria, bacteria utilize defense systems to identify and destroy foreign elements. One method of defense is called CRISPR-Cas (Clustered Regularly Interspaced Short Palindromic Repeats – CRISPR-Associated). Many different bacteria and most archaea use CRISPR-Cas systems. There are many diverse types of CRISPR-Cas systems, each of which provides defense in a slightly different way. One such CRISPR-Cas type is called type IV. The type IV CRISPR-Cas system is poorly understood and there are very few studies published on type IV …

A Program Evaluation Of Competency Training Within A College Student Health Center, Kala E. Randazzo

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Integrated primary care (IPC) is a method for providing medical and psychotherapy services within a single primary care setting. Doctoral psychology students pursuing a career in psychotherapy may receive training in IPC as doctoral students. However, the field of IPC has a limited understanding of the current quality of IPC training for doctoral psychology students. The current study utilized professional competency guidelines for practicing psychology in IPC settings to evaluate doctoral training provided at the Utah State University Student Health Center. Doctoral psychology training at the Student Health Center was evaluated for how well it provides training in IPC competencies …

Evaluation Of Bioretention Performance In Northern Utah As A Function Of Media, Vegetation, And Loading, Trixie Rife

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Pollutants found in stormwater runoff are a growing environmental concern. The EPA has identified bioretention (BR) systems as a best management practice for the control of pollutants in stormwater runoff. BR systems reduce pollutant loads discharged to surface water bodies and to lower pollutant concentrations of water infiltrating into underlying groundwater. However, knowledge of the performance of BR systems in semi-arid Western climates is lacking. This study was conducted at three field sites in Northern Utah to evaluate the effectiveness of various natural and engineered media and various plant species on pollutant removal subjected to a range of pollutant loadings …

The Influence Of Culture On Behavior-Based Tasks Of Impulsivity, Byron H. Garcia

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Background: Among Latinx youth residing in the United States (U.S), the adoption of U.S cultural behaviors, values, and identity has been proposed to increase risk for negative outcomes, such as substance use. Research also suggests that the maintenance of Latinx cultural behaviors, values, and identity may be protective. Although there is an established link between impulsivity and substance use outcomes, very little research has sought to explore factors that influence impulsivity among Latinx groups. Furthermore, behavioral tasks have made substantial contributions as measures of impulsivity, yet few studies have examined cultural identity domains in relation to these behavioral tasks.

Objective: …

Social Media Usage And Psychological Well-Being In Adolescents: A Comparison Among Demographics, Heather A. Mccall

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The purpose of this study was to examine social media use of adolescents in the U.S. and their psychological well-being to expand the research of this quickly changing topic. The researcher collected online responses from 409 adolescents between the ages of 13-17 years old concerning their social media use and psychological well-being.

Variables in the research included time spent on social media, number of platforms used, active use, parental mediation, and emotional connection. The two variables that had a statistically significant relationship with psychological well-being included parental mediation and emotional connection to social media.

Recommendations for continued research could include …

Specific Secondary Bile Acids Control Chicken Necrotic Enteritis, Mohit Bansal, Tahrir Jatli Alenezi, Ying Fu, Ayidh Almansour, Hong Wang, Anamika Gupta, Rohana Liyanage, Danielle B. Graham, Billy Hargis, Xiaolun Sun

Poultry Science Faculty Publications and Presentations

Necrotic enteritis (NE), mainly induced by the pathogens of Clostridium perfringens and coccidia, causes huge economic losses with limited intervention options in the poultry industry. This study investigated the role of specific bile acids on NE development. Day-old broiler chicks were assigned to six groups: noninfected, NE, and NE with four bile diets of 0.32% chicken bile, 0.15% commercial ox bile, 0.15% lithocholic acid (LCA), or 0.15% deoxycholic acid (DCA). The birds were infected with Eimeria maxima at day 18 and C. perfringens at day 23 and 24. The infected birds developed clinical NE signs. The NE birds suffered severe …

Stage- And Sex-Specific Transcriptome Analyses Reveal Distinctive Sensory Gene Expression Patterns In A Butterfly, David A. Ernst, Erica L. Westerman

Biological Sciences Faculty Publications and Presentations

Background

Animal behavior is largely driven by the information that animals are able to extract and process from their environment. However, the function and organization of sensory systems often change throughout ontogeny, particularly in animals that undergo indirect development. As an initial step toward investigating these ontogenetic changes at the molecular level, we characterized the sensory gene repertoire and examined the expression profiles of genes linked to vision and chemosensation in two life stages of an insect that goes through metamorphosis, the butterfly Bicyclus anynana.

Results

Using RNA-seq, we compared gene expression in the heads of late fifth instar …

Leigh Syndrome: A Tale Of Two Genomes, Ajibola B. Bakare, Edward J. Lesnefsky, Shilpa Iyer

Biological Sciences Faculty Publications and Presentations

Leigh syndrome is a rare, complex, and incurable early onset (typically infant or early childhood) mitochondrial disorder with both phenotypic and genetic heterogeneity. The heterogeneous nature of this disorder, based in part on the complexity of mitochondrial genetics, and the significant interactions between the nuclear and mitochondrial genomes has made it particularly challenging to research and develop therapies. This review article discusses some of the advances that have been made in the field to date. While the prognosis is poor with no current substantial treatment options, multiple studies are underway to understand the etiology, pathogenesis, and pathophysiology of Leigh syndrome. …

Mycoremediation And Fungi-Assisted Phytoremediation Of Heavy Metal Contaminated Landfills Soil, Auwalu Hassan

Student Works (2020-2029)

The research is aimed to study the bioremediation of heavy metal landfill leachate contaminated soil using consortia of indigenous filamentous fungi and indigenous plants. Thirteen identified fungal isolates were used to formulate the consortia for mycoremediation. The mycoremediation was carried out in three phases, namely laboratory trial 1 using five consortia, laboratory trial 2 with varied concentrations of inoculum, and field application. The fungi-assisted phytoremediation was carried out in two phases: laboratory trials using Alocasia calidora, Prosopis juliflora, and Jatropha sp. and field trial using A. calidora. The analyses conducted included soil physicochemical and biological parameters, Fourier-transform infrared spectroscopy (FTIR) …

Third-Person Perception As A Mediator Of The Influence Of Social Networking Sites Use And Personal Relevance To Preventive Behavioural Intention, Joseph Edwin, Ummi Salamah

JURNAL KOMUNIKASI INDONESIA

News coverage on Covid-19 is important as it provides people with important updates as well as crucial information for avoiding infection. Previous studies have shown undesirable messages such as Covid-19 news that circulates in social networking sites can trigger ‘third-person perception (TPP)’, which is a phenomenon in which audiences presume a message exerts more influence upon people other than themselves. It is crucial to examine whether audiences experience TPP during consumption of pandemic news – especially when there is a possible negative correlation between TPP and protective behavioural intentions. Previous studies showed empirical evidence when users used Covid-19 news in …

Realizing History: Tolkien And The Desire Called Marx, Robert Tally

Mythcon

In this talk, I argue that the “realization” of history is an important aim of Tolkien’s art. Tolkien’s desire to create a new mythology for England, which is well known, is in part a response to the shifting ground upon which he stood, in reaction to what Marx and Engels in the Communist Manifestohad called the “constant revolutionizing” and the “cosmopolitan character” of bourgeois society, industrial civilization, imperialism, and the rise of monopoly capital. Tolkien’s yearning for a mythic past, despite its clear nationalism and chauvinism at first, reflected a deep desire to connect his modern world with an …

Other Than Him: Superman As The Alien That Made Good, Roy Schwartz

Mythcon

When discussing depictions of the alien in American popular culture—as extraterrestrial, as strange foreigner, and as both, an otherworldly Other—the most famous example is rarely considered; SUPERMAN. Introduced in 1938, this strange visitor from another planet possesses powers and abilities far beyond those of mortal men but walks among us disguised as a mild-mannered human. He’s the fantastic hiding in plain sight as the most mundane, an Other beloved as familiar, a singular being of another race who’s come to symbolize the best in humanity. And not by accident. Superman was created by two Cleveland teens, Jerry Siegel and Joe …

Pathways: A Fertility Preservation Patient Decision Aid Website For Women With Cancer – Implementation Feasibility And Adaptations For Women From The Lgbtq+ Community, Adam Warren, Aubri Hoffman, Terri Woodard

Summer Experience 2021

No abstract provided.

Development And Characterization Of Stat3 Y705h Mutated Breast Cancer Cell Lines For Genetic Validation Of The Mechanism Of Action Of Stat3 Inhibitor Tti-101, Matt S. Macarthur, Moses M. Kasembeli, David J. Tweardy

Summer Experience 2021

No abstract provided.

The Battle Over Cattle: Livestock Management In A Changing Rural Landscape, Monique Salomon, Robert Fincham, Terry Everson

IGC Proceedings (1977-2023)

No abstract provided.

Recent Innovations In Education‐Extension‐Research Networks Of Industrialised Agricultures, Mark Paine, Marianne Cerf

IGC Proceedings (1977-2023)

No abstract provided.

Using Bioenergetics To Model The Effects Of Climate Change On Bluntnose Minnows Pimephales Notatus In A Western Kentucky Stream, Christian Slone, Christian Slone

Student Scholarship & Creative Works

Bioenergetics considers a variety of factors like consumption, excretion, and metabolism to quantify the energy use of an organism. A common use of bioenergetics modeling is to help solve fish stock problems. This project looks to develop a bioenergetics model for Bluntnose Minnows Pimephales notatus to help predict effects of climate change on the biodiversity of western Kentucky streams. We used R and NetLogo to create an agent-based bioenergetics model to simulate the size distribution of Bluntnose Minnows under various temperature regimes. Bluntnose Minnow metabolism increases, and consumption decreases with an increase in water temperature. Fish growth seems to be …

The Results Of Child Sexual Abuse And How They Can Be Mitigated, Joy Buchman

Counselor Education Capstones

This review of literature sought to compile a list, albeit not exhaustive, of short and long-term effects of childhood sexual abuse (CSA) and several types of play therapy used to effectively mitigate these effects. CSA has a long reaching impact affecting a child’s well-being, a nation’s societal health in addition to having a massive financial impact worldwide. Some children who are sexually abused do not struggle with negative effects and others are impacted for a lifetime. Some effects of CSA are developmental, cognitive, physical and psychological. These effects can impact the way a child views themselves, adults and the world. …

Thematic Analysis Of Military Medical Ethics Publications From 2000 To 2020—A Bibliometric Approach, Zachary Bailey [*], Peter Mahoney, Marina Miron, Martin Bricknell

Student Publications

There has been external criticism of the compliance of military health personnel with internationally agreed principles in military medical ethics (MME). In response, a number of authors have called for clarity on the principles and topics within the domain of MME. This complements an increased acknowledgment of the need for education in MME for military health personnel. Our paper utilizes bibliometric techniques to identify key themes in MME to inform the development of a curriculum for this subject.

Future Space Missions And Human Enhancement: Medical And Ethical Challenges, Konrad Szocik, Mark Shelhamer, Martin Braddock, Francis A. Cucinotta, Chris Impey, Pete Worden, Ted Peters, Milan M. Ćirković, Kelly C. Smith, Koji Tachibana, Michael J. Reiss, Ziba Norman, Arvin M. Gouw, Gonzalo Munévar

Health Physics and Diagnostic Sciences Faculty Research

Future human space missions to Mars and beyond may be realized for different research, economic, political or survival reasons. Since space remains a hazardous environment for humans, space exploration and exploitation requires the development and deployment of effective countermeasures. In this paper, we discuss prospects for human enhancement by gene editing, synthetic biology, or implants, for the purposes of future space missions. We argue that there are good reasons to consider such options, and that ethical arguments can be made in favor of human enhancement to enable long-term space exploration.

Towards Laparoscopic Visual Ai: Development Of A Visual Guidance System For Laparoscopic Surgical Palpation, Kerwin G. Caballas, Harold Jay M. Bolingot, Nathaniel Joseph C. Libatique, Gregory L. Tangonan

Electronics, Computer, and Communications Engineering Faculty Publications

Currently, there are numerous obstacles to performing palpation during laparoscopic surgery. The laparoscopic interface does not allow access into a patient's body anything other than the tools that are inserted through the trocars. Palpation is usually done with the surgeon's hands to detect lumps and certain anomalies underneath the skin, muscle, or tissues. It can be useful technique for augmenting surgical decision-making during laparoscopic surgery, especially when discerning operations involving cancerous tumors. Previous research demonstrated the use of tactile sensors and mechanical sensors placed at the end-effectors for palpating laparoscopically. In this study, a visual guidance system is proposed for …

Using Virus-Like Particles To Combat Cardiovascular Disease And Identify An Immunogenic Target Of Natural Zika Virus Infection In Humans, Alexandra Marie Fowler

Biomedical Sciences ETDs

Virus-like particles (VLPs) derived from bacteriophages have been utilized as highly immunogenic vaccine platforms for displaying antigen targets of interest. Bacteriophage VLPs have a highly repetitive structure made of protein subunits that self-assemble into an icosahedral particle. These structures can strongly activate the immune system, especially B cells. Arraying antigens on the surface of VLPs in a multivalent manner can, in turn, confer the ability to induce strong antibody responses to virtually any target. This technique can even be used to elicit antibody responses against self-antigens. Here we have exploited these features for developing VLP-based vaccines that target self-molecules involved …

Physical Activity Behaviours In Adolescence: Current Evidence And Opportunities For Intervention, Esther M.F. Van Sluijs, Ulf Ekelund, Inacio Crochemore-Silva, Regina Guthold, Amy Ha, David Lubans, Adewale L. Oyeyemi, Ding Ding, Peter T. Katzmarzyk

Population and Public Health Science Faculty Publications

Young people aged 10–24 years constitute 24% of the world's population; investing in their health could yield a triple benefit—eg, today, into adulthood, and for the next generation. However, in physical activity research, this life stage is poorly understood, with the evidence dominated by research in younger adolescents (aged 10–14 years), school settings, and high-income countries. Globally, 80% of adolescents are insufficiently active, and many adolescents engage in 2 h or more daily recreational screen time. In this Series paper, we present the most up-to-date global evidence on adolescent physical activity and discuss directions for identifying potential solutions to enhance …