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2021

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Global Distribution, Host Range And Prevalence Of Trypanosoma Vivax: A Systematic Review And Meta-Analysis, Eyerusalem Fetene, Samson Leta, Fikru Regassa, Philippe Büscher Jan 2021

Global Distribution, Host Range And Prevalence Of Trypanosoma Vivax: A Systematic Review And Meta-Analysis, Eyerusalem Fetene, Samson Leta, Fikru Regassa, Philippe Büscher

Harold W. Manter Laboratory of Parasitology: Library Materials

Background

Trypanosomosis caused by Trypanosoma vivax is one of the diseases threatening the health and productivity of livestock in Africa and Latin America. Trypanosoma vivax is mainly transmitted by tsetse fies; however, the parasite has also acquired the ability to be transmitted mechanically by hematophagous dipterans. Understanding its distribution, host range and prevalence is a key step in local and global efforts to control the disease.

Methods

The study was conducted according to the methodological recommendations of the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) checklist. A systematic literature search was conducted on three search engines, namely PubMed, …


Visual Growth Tracking For Automated Leaf Stage Monitoring Based On Image Sequence Analysis, Srinidhi Bashyam, Sruti Das Choudhury, Ashok Samal, Tala Awada Jan 2021

Visual Growth Tracking For Automated Leaf Stage Monitoring Based On Image Sequence Analysis, Srinidhi Bashyam, Sruti Das Choudhury, Ashok Samal, Tala Awada

School of Computing: Faculty Publications

In this paper, we define a new problem domain, called visual growth tracking, to track different parts of an object that grow non-uniformly over space and time for application in image- based plant phenotyping. The paper introduces a novel method to reliably detect and track individual leaves of a maize plant based on a graph theoretic approach for automated leaf stage monitoring. The method has four phases: optimal view selection, plant architecture determination, leaf tracking, and generation of a leaf status report. The method accepts an image sequence of a plant as the input and automatically generates a leaf status …


Influence Of Irrigation Drivers Using Boosted Regression Trees: Kansas High Plains, Susan E. Lamb, Erin M.K. Haacker, Samuel J. Smidt Jan 2021

Influence Of Irrigation Drivers Using Boosted Regression Trees: Kansas High Plains, Susan E. Lamb, Erin M.K. Haacker, Samuel J. Smidt

Department of Earth and Atmospheric Sciences: Faculty Publications

Groundwater levels across parts of western Kansas have been declining at unsustainable rates due to pumping for agricultural irrigation despite water-saving efforts. Accelerating this decline is the complex agricultural landscape, consisting of both categorical (e.g., management boundaries) and numerical (e.g., crop prices) factors that drive irrigation decisions, making integrated water budget management a challenge. Furthermore, these factors frequently change through time, rendering management strategies outdated within relatively short time scales. This study uses boosted regression trees to simultaneously analyze categorical and numerical data against annual irrigation pumping to determine the relative influence of each factor on groundwater pumping across both …


Honey Bee Foraged Pollen Reveals Temporal Changes In Pollen Protein Content And Changes In Forager Choice For Abundant Versus High Protein Flowers, Gabriela Quinlan, Meghan Milbrath, Clint Otto, Autumn Smart, Deborah D. Iwanowicz, Robert Cornman, Rufus Isaacs Jan 2021

Honey Bee Foraged Pollen Reveals Temporal Changes In Pollen Protein Content And Changes In Forager Choice For Abundant Versus High Protein Flowers, Gabriela Quinlan, Meghan Milbrath, Clint Otto, Autumn Smart, Deborah D. Iwanowicz, Robert Cornman, Rufus Isaacs

Department of Entomology: Faculty Publications

Protein derived from pollen is an essential component of healthy bee diets. Protein content in honey bee foraged pollen varies temporally and spatially, but the drivers underlying this variation remain poorly characterized. We assessed the temporal and spatial variation in honey bee collected pollen in 12 Michigan apiaries over 3 summers (2015–2017). We simultaneously monitored forage in flowering habitats (uncultivated floristically-rich areas and conservation program land) near these apiaries throughout the growing season. We used these data, along with data from the literature on plant pollen protein content, to determine if honey bees collected a greater proportion of pollen from …


A First Flight In North Carolina—But Not At Kitty Hawk, Robert J. Wright Jan 2021

A First Flight In North Carolina—But Not At Kitty Hawk, Robert J. Wright

Department of Entomology: Faculty Publications

The southern corn billbug is a univoltine insect most common in the Coastal Plains region of North Carolina, Virginia, Georgia, and South Carolina. However, this insect can also be found in the midwestern U.S. (Van Duyn and Wright 1999). Early in the growing season, the adults can be found feeding at the base of corn plants—typically with their head pointed downward (Fig. 1)—by inserting their beak into the base of the plant. They can kill or stunt seedlings or injure the developing leaves inside the plant, causing twisted leaves as they emerge or a series of small holes across the …


Transference Of Citizen Science Program Impacts: A Theory Grounded In Public Participation In Scientific Research, Louise I. Lynch-O’Brien, Wayne A. Babchuk, Jenny M. Dauer, Tiffany Heng-Moss, Doug Golick Jan 2021

Transference Of Citizen Science Program Impacts: A Theory Grounded In Public Participation In Scientific Research, Louise I. Lynch-O’Brien, Wayne A. Babchuk, Jenny M. Dauer, Tiffany Heng-Moss, Doug Golick

Department of Entomology: Faculty Publications

Citizen science is known for increasing the geographic, spatial, and temporal scale from which scientists can gather data. It is championed for its potential to provide experiential learning opportunities to the public. Documentation of educational outcomes and benefits for citizen scientists continues to grow. This study proposes an added benefit of these collaborations: the transference of program impacts to individuals outside of the program. The experiences of fifteen citizen scientists in entomology citizen science programs were analyzed using a constructivist grounded theory methodology. We propose the substantive-level theory of transference to describe the social process by which the educational and …


Development And First Evaluation Of An Attractant Impregnated Adhesive Tape Against Blood-Sucking Flies, Junwei J. Zhu, Gwang-Hyun Roh, Yosuke Asamoto, Kujtim Bizati, Jen-Chieh Liu, Alexander Lehmann, Kyle Harrison, David B. Taylor, Hironao Otake Jan 2021

Development And First Evaluation Of An Attractant Impregnated Adhesive Tape Against Blood-Sucking Flies, Junwei J. Zhu, Gwang-Hyun Roh, Yosuke Asamoto, Kujtim Bizati, Jen-Chieh Liu, Alexander Lehmann, Kyle Harrison, David B. Taylor, Hironao Otake

Department of Entomology: Faculty Publications

Stable flies are one of the most important arthropod pests of livestock that reduce cattle weight gain and milk production leading to annual economic losses in excess of $2 billion to the US cattle industry. The host-seeking behavior is primarily mediated by associated odors from stable fly larval development environments and host animals. The present paper reports the development and evaluation of attractant-impregnated adhesive tapes to reduce stable fly attacks on cattle. Laboratory bioassays showed that only m-cresol impregnated adhesive tapes caught significantly more stable flies (16 ± 1) than the control tape without attractant added (7 ± 1), with …


Hitchhiking Or Hang Gliding? Dispersal Strategies Of Two Cereal-Feeding Eriophyoid Mite Species, Agnieszka Majer, Alicja Laska, Gary Hein, Lechosław Kuczyński, Anna Skoracka Jan 2021

Hitchhiking Or Hang Gliding? Dispersal Strategies Of Two Cereal-Feeding Eriophyoid Mite Species, Agnieszka Majer, Alicja Laska, Gary Hein, Lechosław Kuczyński, Anna Skoracka

Department of Entomology: Faculty Publications

Dispersal shapes the dynamics of populations, their genetic structure and species distribution; therefore, knowledge of an organisms’ dispersal abilities is crucial, especially in economically important and invasive species. In this study, we investigated dispersal strategies of two phytophagous eriophyoid mite species: Aceria tosichella (wheat curl mite, WCM) and Abacarus hystrix (cereal rust mite, CRM). Both species are obligatory plant parasites that infest cereals and are of economic significance. We investigated their dispersal success using different dispersal agents: wind and vectors. We hypothesised that in both mite species the main mode of dispersal is moving via wind, whereas phoretic dispersal is …


A Comprehensive Review On Bioactive Peptides Derived From Milk And Milk Products Of Minor Dairy Species, Snigdha Guha, Heena Sharma, Gaurav Kr Deshwal, Priyanka Singh Rao Jan 2021

A Comprehensive Review On Bioactive Peptides Derived From Milk And Milk Products Of Minor Dairy Species, Snigdha Guha, Heena Sharma, Gaurav Kr Deshwal, Priyanka Singh Rao

Department of Food Science and Technology: Faculty Publications

Milk from different species has been exploited for the isolation of various functional ingredients for decades. Irrespective of the source, milk is considered as a complete food, as it provides essential nutrients required by the human body. Proteins and their fractions are valuable sources of bioactive peptides that might exert a health beneficial role in the human body such as immune-modulation, antioxidant activity, ACE-inhibitory activity, anti- neoplastic, anti-microbial, etc. In milk, bioactive peptides may either be present in their natural form or released from their parental proteins due to enzymatic action. The increasing interest in bioactive peptides among researchers has …


Temporal Dynamics Of Chronic Inflammation On The Cecal Microbiota In Il-10-/- Mice, Anne-Marie C. Overstreet, Amanda Ramer-Tait, Jan S. Suchodolski, Jesse M. Hostetter, Chong Wang, Albert E. Jergens, Gregory J. Phillips, Michael J. Wannemeuhler Jan 2021

Temporal Dynamics Of Chronic Inflammation On The Cecal Microbiota In Il-10-/- Mice, Anne-Marie C. Overstreet, Amanda Ramer-Tait, Jan S. Suchodolski, Jesse M. Hostetter, Chong Wang, Albert E. Jergens, Gregory J. Phillips, Michael J. Wannemeuhler

Department of Food Science and Technology: Faculty Publications

The intestinal microbiota is a critical component of mucosal health as evidenced by the fact that alterations in the taxonomic composition of the gastrointestinal microbiota are associated with inflammatory bowel diseases. To better understand how the progression of inflammation impacts the composition of the gastrointestinal microbiota, we used culture independent taxonomic profiling to identify temporal changes in the cecal microbiota of C3Bir IL-10-/- mice concomitantly with the onset and progression of colitis. This analysis revealed that IL-10-/- mice displayed a biphasic progression in disease severity, as evidenced by histopathological scores and cytokine production. Beginning at 4 weeks of age, pro-inflammatory …


Impact Of Probiotic B. Infantis Evc001 Feeding In Premature Infants On The Gut Microbiome, Nosocomially Acquired Antibiotic Resistance, And Enteric Inflammation, Marielle Nguyen, Heaven Holdbrooks, Prasanthi Mishra, Maria A. Abrantes, Sherri Eskew, Mariajamiela Garma, Cyr-Geraurd Oca, Carrie Mcguckin, Cynthia B. Hein, Ryan D. Mitchell, Sufyan Kazi, Giorgio Casaburi, Heather K. Brown, Steven A. Frese, Bethany M. Henrick Jan 2021

Impact Of Probiotic B. Infantis Evc001 Feeding In Premature Infants On The Gut Microbiome, Nosocomially Acquired Antibiotic Resistance, And Enteric Inflammation, Marielle Nguyen, Heaven Holdbrooks, Prasanthi Mishra, Maria A. Abrantes, Sherri Eskew, Mariajamiela Garma, Cyr-Geraurd Oca, Carrie Mcguckin, Cynthia B. Hein, Ryan D. Mitchell, Sufyan Kazi, Giorgio Casaburi, Heather K. Brown, Steven A. Frese, Bethany M. Henrick

Department of Food Science and Technology: Faculty Publications

Background: Preterm birth is a major determinant of neonatal survival and morbidity, but the gut microbiome and associated enteric inflammation are also key factors in neonatal development and the risk of associated morbidities. We prospectively and longitudinally followed two cohorts of preterm infants, one of which was fed activated Bifidobacterium longum subsp. infantis (B. infantis) EVC001 8 × 109 CFU daily, and the other was not fed a probiotic. Hospital feeding protocol assigned all infants born at < 1500 g and/or < 32 weeks corrected gestational age to the probiotic feeding protocol, whereas infants born at > 1500 g and/or > 32 weeks corrected gestational age were not fed a probiotic. Fecal samples were opportunistically collected from 77 infants throughout the …


Host Identity And Geographic Location Significantly Affect Gastrointestinal Microbial Richness And Diversity In Western Lowland Gorillas (Gorilla Gorilla Gorilla) Under Human Care, Katrina Eschweiler, Jonathan B. Clayton, Anneke Moresco, Erin A. Mckenney, Larry J. Minter, Mallory J. Suhr Van Haute, William Gasper, Shivdeep Singh Hayer, Lifeng Zhu, Kathryn Cooper, Kimberly Ange-Van Heugten Jan 2021

Host Identity And Geographic Location Significantly Affect Gastrointestinal Microbial Richness And Diversity In Western Lowland Gorillas (Gorilla Gorilla Gorilla) Under Human Care, Katrina Eschweiler, Jonathan B. Clayton, Anneke Moresco, Erin A. Mckenney, Larry J. Minter, Mallory J. Suhr Van Haute, William Gasper, Shivdeep Singh Hayer, Lifeng Zhu, Kathryn Cooper, Kimberly Ange-Van Heugten

Department of Food Science and Technology: Faculty Publications

The last few decades have seen an outpouring of gastrointestinal (GI) microbiome studies across diverse host species. Studies have ranged from assessments of GI microbial richness and diversity to classification of novel microbial lineages. Assessments of the “normal” state of the GI microbiome composition across multiple host species has gained increasing importance for distinguishing healthy versus diseased states. This study aimed to determine baselines and trends over time to establish “typical” patterns of GI microbial richness and diversity, as well as interindividual variation, in three populations of western lowland gorillas (Gorilla gorilla gorilla) under human care at three …


Development Of A Multiplex Real-Time Pcr Assay For Predicting Macrolide And Tetracycline Resistance Associated With Bacterial Pathogens Of Bovine Respiratory Disease, Enakshy Dutta, John Dustin Loy, Caitlyn A. Deal, Emily L. Wynn, Michael L. Clawson, Jennifer Clarke, Bing Wang Jan 2021

Development Of A Multiplex Real-Time Pcr Assay For Predicting Macrolide And Tetracycline Resistance Associated With Bacterial Pathogens Of Bovine Respiratory Disease, Enakshy Dutta, John Dustin Loy, Caitlyn A. Deal, Emily L. Wynn, Michael L. Clawson, Jennifer Clarke, Bing Wang

Department of Food Science and Technology: Faculty Publications

Antimicrobial resistance (AMR) in bovine respiratory disease (BRD) is an emerging concern that may threaten both animal and public health. Rapid and accurate detection of AMR is essential for prudent drug therapy selection during BRD outbreaks. This study aimed to develop a multiplex quantitative real-time polymerase chain reaction assay (qPCR) to provide culture-independent information regarding the phenotypic AMR status of BRD cases and an alternative to the gold-standard, culture-dependent test. Bovine clinical samples (297 lung and 111 nasal) collected in Nebraska were subjected to qPCR quantification of macrolide (MAC) and tetracycline (TET) resistance genes and gold-standard determinations of AMR of …


Potential Applications Of Endo-B-N-Acetylglucosaminidases From Bifidobacterium Longum Subspecies Infantis In Designing Value-Added, Next-Generation Infant Formulas, Hatice Duman, Merve Kaplan, Aysenur Arslan, Arif Sercan Sahutoglu, Haci Mehmet Kayili, Steven A. Frese, Sercan Karav Jan 2021

Potential Applications Of Endo-B-N-Acetylglucosaminidases From Bifidobacterium Longum Subspecies Infantis In Designing Value-Added, Next-Generation Infant Formulas, Hatice Duman, Merve Kaplan, Aysenur Arslan, Arif Sercan Sahutoglu, Haci Mehmet Kayili, Steven A. Frese, Sercan Karav

Department of Food Science and Technology: Faculty Publications

Human milk is the optimal source of infant nutrition. Among many other health benefits, human milk can stimulate the development of a Bifidobacterium-rich microbiome through human milk oligosaccharides (HMOs). In recent years, the development of novel formulas has placed particular focus on incorporating some of the beneficial functional properties of human milk. These include adding specific glycans aimed to selectively stimulate the growth of Bifidobacterium. However, the bifidogenicity of human milk remains unparalleled. Dietary N-glycans are carbohydrate structures conjugated to a wide variety of glycoproteins. These glycans have a remarkable structural similarity to HMOs and, when released, show …


Bovine Colostrum And Its Potential For Human Health And Nutrition, Aysenur Arslan, Merve Kaplan, Hatice Duman, Ayse Bayraktar, Melih Ertürk, Bethany M. Henrick, Steven A. Frese, Sercan Karav Jan 2021

Bovine Colostrum And Its Potential For Human Health And Nutrition, Aysenur Arslan, Merve Kaplan, Hatice Duman, Ayse Bayraktar, Melih Ertürk, Bethany M. Henrick, Steven A. Frese, Sercan Karav

Department of Food Science and Technology: Faculty Publications

Colostrum is the first milk produced post-partum by mammals and is compositionally distinct from mature milk. Bovine colostrum has a long history of consumption by humans, and there have been a number of studies investigating its potential for applications in human nutrition and health. Extensive characterization of the constituent fractions has identified a wealth of potentially bioactive molecules, their potential for shaping neonatal development, and the potential for their application beyond the neonatal period. Proteins, fats, glycans, minerals, and vitamins are abundant in colostrum, and advances in dairy processing technologies have enabled the advancement of bovine colostrum from relative limitations …


Molecular Adaptation To Folivory And The Conservation Implications For Madagascar’S Lemurs, Elaine E. Guevara, Lydia K. Greene, Marina B. Blanco, Casey Farmer, Jeannin Ranaivonasy, Joelisoa Ratsirarson, Karine L. Mahefarisoa, Tsiky Rajaonarivelo, Hajanirina H. Rakotondrainibe, Randall E. Junge, Cathy V. Williams, Elodi Rambeloson, Hoby A. Rasoanaivo, Vololonirina Rahalinarivo, Laza H. Andrianandrianina, Jonathan B. Clayton, Ryan S. Rothman, Richard R. Lawler, Brenda J. Bradley, Anne D. Yoder Jan 2021

Molecular Adaptation To Folivory And The Conservation Implications For Madagascar’S Lemurs, Elaine E. Guevara, Lydia K. Greene, Marina B. Blanco, Casey Farmer, Jeannin Ranaivonasy, Joelisoa Ratsirarson, Karine L. Mahefarisoa, Tsiky Rajaonarivelo, Hajanirina H. Rakotondrainibe, Randall E. Junge, Cathy V. Williams, Elodi Rambeloson, Hoby A. Rasoanaivo, Vololonirina Rahalinarivo, Laza H. Andrianandrianina, Jonathan B. Clayton, Ryan S. Rothman, Richard R. Lawler, Brenda J. Bradley, Anne D. Yoder

Department of Food Science and Technology: Faculty Publications

The lemurs of Madagascar include numerous species characterized by folivory across several families. Many extant lemuriform folivores exist in sympatry in Madagascar’s remaining forests. These species avoid feeding competition by adopting different dietary strategies within folivory, reflected in behavioral, morphological, and microbiota diversity across species. These conditions make lemurs an ideal study system for understanding adaptation to leaf-eating. Most folivorous lemurs are also highly endangered. The significance of folivory for conservation outlook is complex. Though generalist folivores may be relatively well equipped to survive habitat disturbance, specialist folivores occupying narrow dietary niches may be less resilient. Characterizing the genetic bases …


Heuristic And Hierarchical-Based Population Mining Of Salmonella Enterica Lineage I Pan-Genomes As A Platform To Enhance Food Safety, Joao Carlos Gomes-Neto, Natasha Pavlovikj, Carmen Cano, Baha Abdalhamid, Gabriel Asad Al-Ghalith, John Dustin Loy, Dan Knights, Peter C. Iwen, Byron D. Chaves, Andrew K. Benson Jan 2021

Heuristic And Hierarchical-Based Population Mining Of Salmonella Enterica Lineage I Pan-Genomes As A Platform To Enhance Food Safety, Joao Carlos Gomes-Neto, Natasha Pavlovikj, Carmen Cano, Baha Abdalhamid, Gabriel Asad Al-Ghalith, John Dustin Loy, Dan Knights, Peter C. Iwen, Byron D. Chaves, Andrew K. Benson

Department of Food Science and Technology: Faculty Publications

The recent incorporation of bacterial whole-genome sequencing (WGS) into Public Health laboratories has enhanced foodborne outbreak detection and source attribution. As a result, large volumes of publicly available datasets can be used to study the biology of foodborne pathogen populations at an unprecedented scale. To demonstrate the application of a heuristic and agnostic hierarchical population structure guided pan-genome enrichment analysis (PANGEA), we used populations of S. enterica lineage I to achieve two main objectives: (i) show how hierarchical population inquiry at different scales of resolution can enhance ecological and epidemiological inquiries; and (ii) identify population-specific inferable traits that could provide …


Prokevo: An Automated, Reproducible, And Scalable Framework For High-Throughput Bacterial Population Genomics Analyses, Natasha Pavlovikj, Joao Carlos Gomes-Neto, Jitender S. Deogun, Andrew K. Benson Jan 2021

Prokevo: An Automated, Reproducible, And Scalable Framework For High-Throughput Bacterial Population Genomics Analyses, Natasha Pavlovikj, Joao Carlos Gomes-Neto, Jitender S. Deogun, Andrew K. Benson

Department of Food Science and Technology: Faculty Publications

Whole Genome Sequence (WGS) data from bacterial species is used for a variety of applications ranging from basic microbiological research, diagnostics, and epidemiological surveillance. The availability of WGS data from hundreds of thousands of individual isolates of individual microbial species poses a tremendous opportunity for discovery and hypothesis-generating research into ecology and evolution of these microorganisms. Flexibility, scalability, and user-friendliness of existing pipelines for population-scale inquiry, however, limit applications of systematic, population-scale approaches. Here, we present ProkEvo, an automated, scalable, reproducible, and open-source framework for bacterial population genomics analyses using WGS data. ProkEvo was specifically developed to achieve the following …


Interspecies Variation In Hominid Gut Microbiota Controls Host Gene Regulation, Amanda L. Muehlbauer, Allison L. Richards, Adnan Alazizi, Michael B. Burns, Andres Gomez, Jonathan B. Clayton, Klara Petrzelkova, Camilla Cascardo, Justyna Resztak, Xiaoquan Wen, Roger Pique-Regi, Francesca Luca, Ran Blekhman Jan 2021

Interspecies Variation In Hominid Gut Microbiota Controls Host Gene Regulation, Amanda L. Muehlbauer, Allison L. Richards, Adnan Alazizi, Michael B. Burns, Andres Gomez, Jonathan B. Clayton, Klara Petrzelkova, Camilla Cascardo, Justyna Resztak, Xiaoquan Wen, Roger Pique-Regi, Francesca Luca, Ran Blekhman

Department of Food Science and Technology: Faculty Publications

The gut microbiome exhibits extreme compositional variation between hominid hosts. However, it is unclear how this variation impacts host physiology across species and whether this effect can be mediated through microbial regulation of host gene expression in interacting epithelial cells. Here, we characterize the transcriptional response of human colonic epithelial cells in vitro to live microbial communities extracted from humans, chimpanzees, gorillas, and orangutans. We find that most host genes exhibit a conserved response, whereby they respond similarly to the four hominid microbiomes. However, hundreds of host genes exhibit a divergent response, whereby they respond only to microbiomes from specific …


The International Scientific Association For Probiotics And Prebiotics (Isapp) Consensus Statement On Fermented Foods, Maria L. Marco, Mary Ellen Sanders, Michael Gänzle, Marie Claire Arrieta, Paul D. Cotter, Luc De Vuyst, Colin Hill, Wilhelm Holzapfel, Sarah Lebeer, Dan Merenstein, Gregor Reid, Benjamin E. Wolfe, Robert Hutkins Jan 2021

The International Scientific Association For Probiotics And Prebiotics (Isapp) Consensus Statement On Fermented Foods, Maria L. Marco, Mary Ellen Sanders, Michael Gänzle, Marie Claire Arrieta, Paul D. Cotter, Luc De Vuyst, Colin Hill, Wilhelm Holzapfel, Sarah Lebeer, Dan Merenstein, Gregor Reid, Benjamin E. Wolfe, Robert Hutkins

Department of Food Science and Technology: Faculty Publications

An expert panel was convened in September 2019 by The International Scientific Association for Probiotics and Prebiotics (ISAPP) to develop a definition for fermented foods and to describe their role in the human diet. Although these foods have been consumed for thousands of years, they are receiving increased attention among biologists, nutritionists, technologists, clinicians and consumers. Despite this interest, inconsistencies related to the use of the term ‘fermented’ led the panel to define fermented foods and beverages as “foods made through desired microbial growth and enzymatic conversions of food components”. This definition, encompassing the many varieties of fermented foods, is …


Dietary Fiber Intake, The Gut Microbiome, And Chronic Systemic Inflammation In A Cohort Of Adult Men, Wenjie Ma, Long H. Nguyen, Mingyang Song, Dong D. Wang, Eric A. Franzosa, Yin Cao, Amit Joshi, David A. Drew, Raaj Mehta, Kerry L. Ivey, Lisa L. Strate, Edward L. Giovannucci, Jacques Izard, Wendy Garrett, Eric B. Rimm, Curtis Huttenhower, Andrew T. Chan Jan 2021

Dietary Fiber Intake, The Gut Microbiome, And Chronic Systemic Inflammation In A Cohort Of Adult Men, Wenjie Ma, Long H. Nguyen, Mingyang Song, Dong D. Wang, Eric A. Franzosa, Yin Cao, Amit Joshi, David A. Drew, Raaj Mehta, Kerry L. Ivey, Lisa L. Strate, Edward L. Giovannucci, Jacques Izard, Wendy Garrett, Eric B. Rimm, Curtis Huttenhower, Andrew T. Chan

Department of Food Science and Technology: Faculty Publications

Background: A higher intake of dietary fiber is associated with a decreased risk of chronic inflammatory diseases such as cardiovascular disease and inflammatory bowel disease. This may function in part due to abrogation of chronic systemic inflammation induced by factors such as dysbiotic gut communities. Data regarding the detailed influences of long-term and recent intake of differing dietary fiber sources on the human gut microbiome are lacking.

Methods: In a cohort of 307 generally healthy men, we examined gut microbiomes, profiled by shotgun metagenomic and metatranscriptomic sequencing, and long-term and recent dietary fiber intake in relation to plasma …


Performance Of Two Handheld Nir Spectrometers To Quantify Crude Protein Of Composite Animal Forage And Feedstuff, Isaac R. Rukundo, Mary-Grace C. Danao, James C. Macdonald, Randy L. Wehling, Curtis L. Weller Jan 2021

Performance Of Two Handheld Nir Spectrometers To Quantify Crude Protein Of Composite Animal Forage And Feedstuff, Isaac R. Rukundo, Mary-Grace C. Danao, James C. Macdonald, Randy L. Wehling, Curtis L. Weller

Department of Food Science and Technology: Faculty Publications

Two handheld near infrared (NIR) spectrometers were used to quantify crude protein (CP) content of mixed forage and feedstuff composed of Sweet Bran, distiller’s grains, corn silage, and corn stalk. First was a transportable spectrometer, which measured in the visible and NIR ranges (320–2500 nm) with a spectral interval of 1 nm (H1). Second was a smartphone spectrometer, which measured from 900–1700 nm with a spectral interval of 4 nm (H2). Spectral data of 147 forage and feed samples were collected by both handheld instruments and split into calibration (n= 120) and validation (n= …


Resource Sharing Among Medical Teaching Libraries: A Developing Country Perspective, Muhammad Sadiq, Khurram Shahzad, Abid Iqbal Jan 2021

Resource Sharing Among Medical Teaching Libraries: A Developing Country Perspective, Muhammad Sadiq, Khurram Shahzad, Abid Iqbal

Library Philosophy and Practice (e-journal)

Resource sharing is a functional as well as financial need of any library. In this modern era of information technology while information explosion is at extreme, it is impossible for a library to cover the entire surface of available knowledge. Developed countries are actual beneficiaries of this practice where idea of resource sharing has been transformed into a formal practice. Developing South Asian countries are also working on this concept in order to adopt it as a practice. This study identified the resource sharing opportunities for medical teaching libraries in Lahore with reference to perception and willingness. The sample of …


Pre-Reading Activities And Students’ Achievement In French Oracy: Implication For Evaluation In Library And Information Science, Kenneth O. Eze Phd, Grace C. Offorma Phd, Christian S. Ugwuanyi Phd, Chinedu I.O. Okeke Phd Jan 2021

Pre-Reading Activities And Students’ Achievement In French Oracy: Implication For Evaluation In Library And Information Science, Kenneth O. Eze Phd, Grace C. Offorma Phd, Christian S. Ugwuanyi Phd, Chinedu I.O. Okeke Phd

Library Philosophy and Practice (e-journal)

Library and Information Science is a profession that is full of people who are passionate about making a positive change in the world. In this profession, the workers are known as Librarians whose duty is to bridge the gaps that exist between people, information and technology. Librarians work to create reader’s advisory resources to encourage young students to develop a lifelong love of reading and learning through pre-reading activities. This paper thus, investigated the effect of pre-reading activities on students’ achievement in French oracy. Using quasi-experimental research design, 154 senior secondary one students participated in the study. French Oracy Achievement …


Core Competencies Required By University Librarians For The Adoption Of Information Technology Tools: An Empirical Study, Khurram Shahzad Jan 2021

Core Competencies Required By University Librarians For The Adoption Of Information Technology Tools: An Empirical Study, Khurram Shahzad

Library Philosophy and Practice (e-journal)

Abstract:

Purpose: This study explores core competencies that are needed by library professionals for the implementation of Information Technology (IT) Tools in the university library of Lahore, Pakistan.

Methodology/Approach: A quantitative approach followed by survey research design was opted to complete the study on the competencies which are needed by library professionals for the implementation of Information Technology (IT) in the university library of Lahore, Pakistan. A total of 120 questionnaires were distributed among university librarians of Lahore. All questionnaires were sent through emails. 91 duly filled questionnaires were received by the researchers from the respondents. The response rate was …


Large-Scale Synthesis Of Compressible And Re-Expandable Three-Dimensional Nanofiber Matrices, Alec Mccarthy, Lorenzo Saldana, Daniel Mcgoldrick, Johnson V. John, Mitchell Kuss, Shixuan Chen, Bin Duan, Mark A. Carlson, Jingwei Xie Jan 2021

Large-Scale Synthesis Of Compressible And Re-Expandable Three-Dimensional Nanofiber Matrices, Alec Mccarthy, Lorenzo Saldana, Daniel Mcgoldrick, Johnson V. John, Mitchell Kuss, Shixuan Chen, Bin Duan, Mark A. Carlson, Jingwei Xie

Department of Mechanical and Materials Engineering: Faculty Publications

Due to their biomimetic properties, electrospun nanofibers have shown great potential in many biomedical fields. However, traditionally-produced nanofibers are typically two-dimensional (2D) membranes limiting their applications. Herein, we report a large-scale synthesis of compressible and reexpandable three-dimensional (3D) nanofiber matrices for potential biomedical applications. The reproducible mass production of such matrices is achieved using a multiple-emitter electrospinning machine with a controlled environment (e.g., temperature, humidity, and air flow rate) followed by an innovative gas-foaming expansion. The modified 20-emitter circular array with 3D-printed needle caps is capable of maintaining stable Taylor cones under extremely high flow rates. The introduction of such …


The 20th Anniversary Meeting Of The Rocky Mountain Virology Association, Joel Rovnak, Laura A. St Clair, Carley Mcalister, Chinemerem P. Ogbu, Jessica Smolenske, Randall J. Cohrs, Rushika Perera Jan 2021

The 20th Anniversary Meeting Of The Rocky Mountain Virology Association, Joel Rovnak, Laura A. St Clair, Carley Mcalister, Chinemerem P. Ogbu, Jessica Smolenske, Randall J. Cohrs, Rushika Perera

Nebraska Center for Virology: Faculty Publications

Due to the COVID-19 pandemic and multiple devastating forest fires, the 2020 meeting of the Rocky Mountain Virology Association was held virtually. The three-day gathering featured talks describing recent advances in virology and prion research. The keynote presentation described the measles virus paradox of immune suppression and life-long immunity. Special invited speakers presented information concerning visualizing antiviral effector cell biology in mucosal tissues, uncovering the T-cell tropism of Epstein-Barr virus type 2, a history and current survey of coronavirus spike proteins, a summary of Zika virus vaccination and immunity, the innate immune response to flavivirus infections, a discussion concerning prion …


Strategies Targeting Hemagglutinin As A Universal Influenza Vaccine, Brianna L. Bullard, Eric A. Weaver Jan 2021

Strategies Targeting Hemagglutinin As A Universal Influenza Vaccine, Brianna L. Bullard, Eric A. Weaver

Nebraska Center for Virology: Faculty Publications

Influenza virus has significant viral diversity, both through antigenic drift and shift, which makes development of a vaccine challenging. Current influenza vaccines are updated yearly to in- clude strains predicted to circulate in the upcoming influenza season, however this can lead to a mismatch which reduces vaccine efficacy. Several strategies targeting the most abundant and im- munogenic surface protein of influenza, the hemagglutinin (HA) protein, have been explored. These strategies include stalk-directed, consensus-based, and computationally derived HA immunogens. In this review, we explore vaccine strategies which utilize novel antigen design of the HA protein to improve cross-reactive immunity for development …


Zika Virus Infection Induces Endoplasmic Reticulum Stress And Apoptosis In Placental Trophoblasts, Philma Glora Muthuraj, Prakask K. Sahoo, Madison Kraus, Taylor Bruett, Arun S. Annamalai, Aryamav Pattnaik, Asit K. Pattnaik, Siddappa N. Byrareddy, Sathish Kumar Natarajan Jan 2021

Zika Virus Infection Induces Endoplasmic Reticulum Stress And Apoptosis In Placental Trophoblasts, Philma Glora Muthuraj, Prakask K. Sahoo, Madison Kraus, Taylor Bruett, Arun S. Annamalai, Aryamav Pattnaik, Asit K. Pattnaik, Siddappa N. Byrareddy, Sathish Kumar Natarajan

Nebraska Center for Virology: Faculty Publications

Zika virus (ZIKV) infection to a pregnant woman can be vertically transmitted to the fetus via the placenta leading to Congenital Zika syndrome. This is characterized by microcephaly, retinal defects, and intrauterine growth retardation. ZIKV induces placental trophoblast apoptosis leading to severe abnormalities in the growth and development of the fetus. However, the molecular mechanism behind ZIKV-induced apoptosis in placental trophoblasts remains unclear. We hypothesize that ZIKV infection induces endoplasmic reticulum (ER) stress in the trophoblasts, and sustained ER stress results in apoptosis. HTR-8 (HTR-8/SVneo), a human normal immortalized trophoblast cell and human choriocarcinoma-derived cell lines (JEG-3 and JAR) were …


A Study On The Pathological Effects Of Trypanorhyncha Cestodes In Dusky Groupers Epinephelus Marginatus From The Canary Islands, Carolina De Sales-Ribeiro, Miguel A. Rivero, Antonio Fernández, Natalia García-Álvarez, Jorge Francisco González, Oscar Quesada-Canales, María José Caballero Jan 2021

A Study On The Pathological Effects Of Trypanorhyncha Cestodes In Dusky Groupers Epinephelus Marginatus From The Canary Islands, Carolina De Sales-Ribeiro, Miguel A. Rivero, Antonio Fernández, Natalia García-Álvarez, Jorge Francisco González, Oscar Quesada-Canales, María José Caballero

Harold W. Manter Laboratory of Parasitology: Library Materials

Trypanorhyncha are cestodes commonly infecting marine fish. Numerous studies have detailed the biology of Trypanorhyncha species, but information on the pathological changes produced by these parasites is limited. Dusky groupers are keystone species necessary for the preservation of several marine ecosystems. Considering their vulnerable state of conservation and the efforts being made to culture them, identification of the effects caused by Trypanorhyncha is vital. Here, we aimed to determine the prevalence and pathological changes produced by Trypanorhyncha in dusky groupers from the Canary Islands. The prevalence of trypanorhynch plerocerci was 96%. Grossly, in the abdominal cavity, there were numerous larvae-filled …