Digital Commons Network^™

Global Patterns And Drivers Of Ecosystem Functioning In Rivers And Riparian Zones, Scott D. Tiegs, David M. Costello, Mark W. Isken, Guy Woodward, Peter B. Mcintyre, Mark O. Gessner, Eric Chauvet, Natalie A. Griffiths, Alexander S. Flecker, Vicenç Acuña, Ricardo J. Albariño, Daniel C. Allen, Cecilia Alonso, Patricio Andino, Clay Arango, Jukka Aroviita, Marcus V. M. Barbosa, Leon A. Barmuta, Colden V. Baxter, Jose Checo Colón-Gaud

Biology: Faculty Publications

River ecosystems receive and process vast quantities of terrestrial organic carbon, the fate of which depends strongly on microbial activity. Variation in and controls of processing rates, however, are poorly characterized at the global scale. In response, we used a peer-sourced research network and a highly standardized carbon processing assay to conduct a global-scale field experiment in greater than 1000 river and riparian sites. We found that Earth’s biomes have distinct carbon processing signatures. Slow processing is evident across latitudes, whereas rapid rates are restricted to lower latitudes. Both the mean rate and variability decline with latitude, suggesting temperature constraints …

Going To Extremes: The Goldilocks/Lagom Principle And Data Distribution, Henry J. Leese, Thozhukat Sathyapalan, Victoria Allgar, Daniel R. Brison, Roger Sturmey

Peninsula Medical School

Numerical data in biology and medicine are commonly presented as mean or median with error or confidence limits, to the exclusion of individual values. Analysis of our own and others’ data indicates that this practice risks excluding ‘Goldilocks’ effects in which a biological variable falls within a range between ‘too much’ and ‘too little’ with a region between where its function is ‘just right’; a concept captured by the Swedish term ‘Lagom’. This was confirmed by a narrative search of the literature using the PubMed database, which revealed numerous relationships of biological and clinical phenomena of the Goldilocks/Lagom form including …

Faking Heroism As A Mechanism Of ‘Mafia Offer’: A Critical Realism Perspective On The Abuse Of Heroism, Layla Al-Hameed

Research outputs 2014 to 2021

No abstract provided.

Human Electroencephalogram Based Biomarkers For Detection Of Alzheimer’S Disease, Ali H. Husseen Al-Nuaimi

School of Engineering, Computing and Mathematics Theses

Alzheimer’s disease (AD) is a progressive disorder that affects cognitive brain functions and develops many years before there are any clinical manifestations. A biomarker that provides a quantitative measure of changes in the brain in the early stages of AD would therefore be useful for early diagnosis. However, this would involve dealing with large numbers of people because up to 50% of dementia sufferers do not receive a formal diagnosis. Thus, there is a need for accurate, low-cost, robust, and easy to use biomarkers that can be used to detect AD in its early stages. Recent guidelines promote the use …

Beyond The Frontiers Of Timeline-Based Planning, Riccardo De Benedictis

School of Engineering, Computing and Mathematics Theses

Any agent, either biological or artificial, understands how to behave in its environment according to its prior knowledge and to its prior experience. The process of deciding which actions to undertake and how to perform them so as to achieve some desired objective is called deliberation. In particular, planning is an abstract and explicit deliberation process that chooses and organizes actions, by anticipating their expected outcomes, with the aim to achieve, as best as possible, some pre-stated objectives called goals. Among the most widespread approaches to automated planning, the classical approach broadly pursues to the following definition of planning: starting …

Hordein Accumulation In Developing Barley Grains, Gregory J. Tanner, Michelle L. Colgrave, Malcolm J. Blundell, Crispin A. Howitt, Antony Bacic

Research outputs 2014 to 2021

The temporal pattern of accumulation of hordein storage proteins in developing barley grains was studied by enzyme-linked immunosorbent assay (ELISA), western blot and liquid chromatography tandem mass spectrometry (LC-MS/MS). Hordein accumulation was compared to the pattern seen for two abundant control proteins, serpin Z4 (an early accumulator) and lipid transferase protein (LTP1, a late accumulator). Hordeins were detected from 6 days post-anthesis (DPA) and peaked at 30 DPA. Changes in fresh weight indicate that desiccation begins at 20 DPA and by 37 DPA fresh weight had decreased by 35%. ELISA analysis of hordein content, expressed on a protein basis, increased …

The Export Flux Of Particulate Organic Carbon Derived From 210po/210pb Disequilibria Along The North Atlantic Geotraces Ga01 Transect: Geovide Cruise, Yi Tang, Nolwenn Lemaitre, Maxi Castrillejo, Montserrat Roca-Martí, Pere Masqué, Gillian Stewart

Research outputs 2014 to 2021

The disequilibrium between 210Po activity and 210Pb activity in seawater samples was determined along the GEOTRACES GA01 transect in the North Atlantic during the GEOVIDE cruise (May-June 2014). A steady-state model was used to quantify vertical export of particulate 210Po. Vertical advection was incorporated into one version of the model using time-averaged vertical velocity, which had substantial variance. This resulted in large uncertainties for the 210Po export flux in this model, suggesting that those calculations of 210Po export fluxes should be used with great care. Despite the large uncertainties, there is no question that the deficits of 210Po in the …

Bioinformatics Analysis Of Metabolism Pathways Of Archaeal Energy Reserves, Liang Wang, Qinghua Liu, Xiang Wu, Yue Huang, Michael J. Wise, Zhanzhong Liu, Wei Wang, Junfeng Hu, Chunying Wang

Research outputs 2014 to 2021

Energy storage compounds play crucial roles in prokaryotic physiology. Five chemical compounds have been identified in prokaryotes as energy reserves: polyphosphate (polyP), polyhydroxyalkanoates (PHAs), glycogen, wax ester (WE) and triacylglycerol (TAG). Currently, no systematic study of archaeal energy storage metabolism exists. In this study, we collected 427 archaeal reference sequences from UniProt database. A thorough pathway screening of energy reserves led to an overview of distribution patterns of energy metabolism in archaea. We also explored how energy metabolism might have impact on archaeal extremophilic phenotypes. Based on the systematic analyses of archaeal proteomes, we confirmed that metabolism pathways of polyP, …

Assessing Emotional Reactivity: Psychometric Properties Of The Perth Emotional Reactivity Scale And The Development Of A Short Form, David Preece, Rodrigo Becerra, Guillermo Campitelli

Research outputs 2014 to 2021

The Perth Emotional Reactivity Scale (PERS) is a 30-item self-report measure of trait levels of emotional reactivity. In this article, we examine the psychometric properties of the PERS subscale and composite scores in an adult community sample (N = 428), and develop an 18-item short form of the measure (PERS–S). The PERS and PERS–S are designed to assess the typical ease of activation, intensity, and duration of one's emotional responses, and do so for positive and negative emotions separately. Our confirmatory factor analyses supported that the PERS and PERS–S both had the same theoretically congruent factor structure, and that all …

Role Of Carbonate Burial In Blue Carbon Budgets, V. Saderne, N.R. Geraldi, P.I. Macreadie, D.T. Maher, J.J. Middelburg, O. Serrano, H. Almahasheer, A. Arias-Ortiz, M. Cusack, B.D. Eyre, J.W. Fourqurean, H. Kennedy, D. Krause-Jensen, T. Kuwae, P.S. Lavery, C.E. Lovelock, N. Marba, P. Masqué, M.A. Mateo, I. Mazarrasa, K.J. Mcglathery, M.P.J. Oreska, C.J. Sanders, I.R. Santos

Research outputs 2014 to 2021

Calcium carbonates (CaCO 3 ) often accumulate in mangrove and seagrass sediments. As CaCO 3 production emits CO 2 , there is concern that this may partially offset the role of Blue Carbon ecosystems as CO 2 sinks through the burial of organic carbon (C org ). A global collection of data on inorganic carbon burial rates (C inorg , 12% of CaCO 3 mass) revealed global rates of 0.8 TgC inorg yr −1 and 15–62 TgC inorg yr −1 in mangrove and seagrass ecosystems, respectively. In seagrass, CaCO 3 burial may correspond to an offset of 30% of the …

Simulating Rewetting Events In Intermittent Rivers And Ephemeral Streams: A Global Analysis Of Leached Nutrients And Organic Matter, Oleksandra Shumilova, Dominik Zak, Thibault Datry, Daniel Von Schiller, Roland Corti, Arnaud Foulquier, Biel Obrador, Klement Tockner, Daniel C. Allan, Florian Altermatt, María Isabel Arce, Shai Arnon, Damien Banas, Andy Banegas‐Medina, Erin Beller, Melanie L. Blanchette, Juan F. Blanco‐Libreros, Joanna Blessing, Iola Gonçalves Boëchat, Kate Boersma, Michael T. Bogan, Núria Bonada, Nick R. Bond, Kate Brintrup, Andreas Bruder, Ryan Burrows, Tommaso Cancellario, Stephanie M. Carlson, Sophie Cauvy‐Fraunié, Núria Cid, Michael Danger, Bianca De Freitas Terra, Anna Maria De Girolamo, Ruben Del Campo, Fiona Dyer, Arturo Elosegi, Emile Faye, Catherine Febria, Ricardo Figueroa, Brian Four, Mark O. Gessner, Pierre Gnohossou, Rosa Gómez Cerezo, Lluís Gomez‐Gener, Manuel A.S. Graça, Simone Guareschi, Björn Gücker, Jason L. Hwan, Skhumbuzo Kubheka, Simone Daniela Langhans, Catherine Leigh, Chelsea J. Little, Stefan Lorenz, Jonathan Marshall, Angus Mcintosh, Clara Mendoza‐Lera, Elisabeth Irmgard Meyer, Marko Miliša, Musa C. Mlambo, Marcos Moleón, Peter Negus, Dev Niyogi, Athina Papatheodoulou, Isabel Pardo, Petr Paril, Vladimir Pešić, Pablo Rodriguez‐Lozano, Robert J. Rolls, Maria Mar Sanchez‐Montoya, Ana Savić, Alisha Steward, Rachel Stubbington, Amina Taleb, Ross Vander Vorste, Nathan Waltham, Annamaria Zoppini, Christiane Zarfl

Research outputs 2014 to 2021

Climate change and human pressures are changing the global distribution and the extent of intermittent rivers and ephemeral streams (IRES), which comprise half of the global river network area. IRES are characterized by periods of flow cessation, during which channel substrates accumulate and undergo physico‐chemical changes (preconditioning), and periods of flow resumption, when these substrates are rewetted and release pulses of dissolved nutrients and organic matter (OM). However, there are no estimates of the amounts and quality of leached substances, nor is there information on the underlying environmental constraints operating at the global scale. We experimentally simulated, under standard laboratory …

Newborn Care Practices Of Mothers In Arab Societies: Implication For Infant Welfare, Diana H. Arabiat, Lisa Whitehead, Mohammad A. Al Jabery, Muhammad Darawad, Sadie Geraghty, Suhaila Halasa

Research outputs 2014 to 2021

INTRODUCTION: There are at least 22 Arab league states and sections in Northern Africa, southwestern Asia, and Europe that incorporate the vast Middle Eastern culture. The purpose of this study was to identify the cultural variations in newborn care practices, self-management of common illnesses, and their potential impact on infant welfare.

METHOD: A qualitative design using a focus group approach with 37 Arab mothers in Jordan was used.

RESULTS: Findings revealed strong similarities in terms of beliefs, care practices, and the experience of intergenerational conflict in establishing and maintaining traditional practices among mothers. Potentially harmful practices included restrictive swaddling, rubbing …

Cationic Biaryl 1,2,3-Triazolyl Peptidomimetic Amphiphiles: Synthesis, Antibacterial Evaluation And Preliminary Mechanism Of Action Studies, Andrew J. Tague, Papanin Putsathit, Katherine A. Hammer, Steven M. Wales, Daniel R. Knight, Thomas V. Riley, Paul A. Keller, Stephen G. Pyne

Research outputs 2014 to 2021

Synthetic small molecular antimicrobial peptidomimetics represent a promising new class of potential antibiotics due to their membrane-disrupting ability and their decreased propensity for bacterial resistance. A library of 43 mono- and di-cationic biaryl 1,2,3-triazolyl peptidomimetics was designed and synthesized based upon previously established lead biarylpeptidomimetics and a known pharmacophore. A reliable, facile and modular synthetic pathway allowed for the efficient synthesis of multiple unique scaffolds which were subjected to divergent derivatization to furnish the amphiphilic compounds. In vitro testing revealed enhanced antibacterial efficacy against a range of pathogenic bacteria, including bacterial isolates with methicillin, vancomycin, daptomycin, or multi-drug resistance. Preliminary …

Facial Identification For Digital Forensic, Hiba Al-Kawaz

School of Engineering, Computing and Mathematics Theses

Forensic facial recognition has become an essential requirement in criminal investigations as a result of the emergence of electronic devices, such as mobile phones and computers, and the huge volume of existing content. Forensic facial recognition goes beyond facial recognition in that it deals with facial images under unconstrained and non-ideal conditions, such as low image resolution, varying facial orientation, poor illumination, a wide range of facial expressions, and the presence of accessories. In addition, digital forensic challenges do not only concern identifying an individual but also include understanding the context, acknowledging the relationships between individuals, tracking, and numbers of …

Computational Study Of Neuronal Oscillations In Motor Control Circuits, Andrea Ferrario

School of Engineering, Computing and Mathematics Theses

In this thesis we used mathematical and computational models to study neuronal net- works that control motor behaviours. Specifically, we modelled two neuronal circuits from two opposite ends of the brain complexity spectrum: the swimming circuit of the hatchling Xenopus tadpole and the human basal ganglia. Due to its relative simplicity, tadpole is a unique animal for studying locomotion us- ing both experiments and models. This allowed us to define three biologically-realistic spiking models to clarify the interplay between the architecture of synaptic connections (structure) and the network’s ability to generate activities that correspond to its swim- ming behaviour (function). …

Computational Model Of Negotiation Skills In Virtual Artificial Agents, Daniela Pacella

School of Engineering, Computing and Mathematics Theses

Negotiation skills represent crucial abilities for engaging in effective social interactions in formal and informal settings. Serious games, intelligent systems and virtual agents can provide solid tools upon which one-to-one training and assessment can be reliably made available. The aim of the present work is to fill the gap between the recent growing interest towards soft skills, and the lack of a robust and modern methodology for supporting their investigation. A computational model for the development of Enact, a 3D virtual intelligent platform for training and testing negotiation skills, will be presented. The serious game allows users to interact with …

The Manufacture And Testing Of Self-Sensing Cnts Nanocomposites For Damage Detecting Applications, Mohammed Al-Bahrani

School of Engineering, Computing and Mathematics Theses

Composite materials are widely used in various important applications due to their good engineering properties. However, these properties can be reduced when subjected to different type of loads. This thesis experimentally, theoretically and statistically investigates the possibility of using multi-walled carbon nanotubes (MWCNTs) as a filler to fabricate self-sensing nanocomposites for fracture and damage sensing applications. Self-sensing composite based MWCNTs can be used to diagnose early stage damage in order to prevent a fatal fracture that could occur in the structure during its working life. Here, different concentrations of MWCNTs were evenly distributed either in an epoxy resin using high …

Optimising Power Consumption For Smart Home Communities, Yaseen Saleem Yaseen

School of Engineering, Computing and Mathematics Theses

Households’ demand-side energy management systems are considered as primary units for optimising power consumption in a community-based environment by peak load minimisation. These peak periods are expensive for energy providers and consumers. The power management in one community can reduce power consumption fluctuations and improve the response to power price variations per day. The fluctuation demand is not convenient in terms of planning, expenses, and logistics. Therefore, more stable demand will allow suppliers to use cheaper resources and avoid the need for additional resources, which are normally used to meet the load demand at peak times. In the current literature, …

Efficient Evolution Of Neural Networks, Paolo Pagliuca

School of Engineering, Computing and Mathematics Theses

This thesis addresses the study of evolutionary methods for the synthesis of neural network controllers. Chapter 1 introduces the research area, reviews the state of the art, discusses promising research directions, and presents the two major scientific objectives of the thesis. The first objective, which is covered in Chapter 2, is to verify the efficacy of some of the most promising neuro-evolutionary methods proposed in the literature, including two new methods that I elaborated. This has been made by designing extended version of the double-pole balancing problem, which can be used to more properly benchmark alternative algorithms, by studying the …

Active Stereo Vision For Manipulator Robot, Abdulla Mohamed

School of Engineering, Computing and Mathematics Theses

This thesis describes a novel active stereo vision platform that was developed to provide visual guidance to fruit harvesting robots. A five degree of freedom camera platform was built in order to identify and localize tomatoes grown in greenhouses in farms. A novel cognitive model of attention with three main features map is used to control the gaze of the camera system. The three feature maps are (A) an online epipolar geometry update to produce a disparity map and affordance of grasping, (B) a vergence controller to provide a map of the depth of tomatoes at high accuracy and (C) …

New Bathynellidae (Crustacea) Taxa And Their Relationships In The Fortescue Catchment Aquifers Of The Pilbara Region, Western Australia, Giulia Perina, Ana I. Camacho, Joel Huey, Pierre Horwitz, Annette Koenders

Research Datasets

In the past 20 years, the number of subterranean taxa discovered in Australia, especially in the Pilbara bioregion, has considerably increased due to incidental environmental surveys often associated with mining development. Bathynellidae are an important component of stygofauna and they occur in most Australian aquifers, but their collection and identification are difficult due to their habitat, and small and fragile bodies with conservative morphology. The study of Pilbaranella ethelensis in the upper Fortescue catchment contributed to a better understanding of the group at local scale, but knowledge at larger catchment scale is still limited. Abundant material collected by different environmental …

Habitat Discontinuities Form Strong Barriers To Gene Flow Among Mangrove Populations, Despite The Capacity For Long Distance Dispersal, Rachel M. Binks, Margaret Byrne, Kathryn Mcmahon, Georgina Pitt, Kathy Murray, Richard D. Evans

Research Datasets

Mangrove forests are among the world’s most important ecosystems but are declining rapidly worldwide. Effective conservation management requires a better understanding of the patterns and drivers of gene flow across a range of spatial scales.

Despite the capacity for long distance propagule dispersal, field studies suggest that mangrove propagules tend not to disperse far from the release point, which has important implications for the impact of habitat discontinuities on gene flow. We use a comprehensive seascape genomics approach to investigate this concept in the world’s most widely distributed mangrove species, Avicennia marina.

Location 21 sites along 2400 km of Western …

Widening Gyre: A Poetics Of Ocean Plastics, Mandy Bloomfield

School of Law, Humanities and Social Sciences

By focusing on contemporary experimental poetry that engages with ocean plastics, this essay explores the capacity of ecopoetics to make distinctive interventions in the environmental humanities, and in particular the blue humanities. It examines work by Stephen Collis, Adam Dickinson, and Evelyn Reilly to show how poetry’s forms of juxtaposition, linkage, linguistic porosity, indeterminacy, and nonnarrative temporalities suggest fertile modes of cultural engagement with the more-than-human oceans. This poetry cultivates amplified modes of attention to more-than-human scales of space, time, agency, and modes of relation, and it performs highly material ways of understanding historical, economic, and aesthetic forces affecting the …

A Century Of Change In North Sea Plankton Communities Explored Through Integrating Historical Datasets, Abigail Mcquatters-Gollop, Jacob Bedford, David Johns

School of Biological and Marine Sciences

No abstract provided.

Use Of Complementary And Alternative Medicine Among People With Cardiovascular Diseases In Southeast Georgia, Chimuanya Okoli, Stacy Carswell, Sewuese Akuse, Kelly L. Sullivan

Biostatistics, Epidemiology & Environmental Health Sciences: Faculty Publications

Background: Heart disease is a leading cause of death in the United States. Proper treatment of patients with cardiovascular disease is essential and can be challenged by non-disclosed use of complementary or alternative treatments. The objective of this study was to assess which demographics were associated with complementary and alternative medicine (CAM) use and if education affects the use of CAM.

Methods: A cross-sectional survey was conducted among a stratified random sample of residents of Southeastern Georgia. Sampling was stratified by urban/rural residence in order to reach sufficient rural residents. Participants that indicated they had been diagnosed with hypertension or …

Non-Contact Trapping And Stretching Of Biological Cells Using Dual-Beam Optical Stretcher On Microfluidic Platform, Aotuo Dong, Balaadithya Uppalapati, Shariful Islam, Brandon Gibbs, Ganesan Kamatchi, Sacharia Albin, Makarand Deo

Electrical & Computer Engineering Faculty Publications

Optical stretcher is a tool in which two counter-propagating, slightly diverging, and identical laser beams are used to trap and axially stretch microparticles in the path of light. In this work, we utilized the dual-beam optical stretcher setup to trap and stretch human embryonic kidney (HEK) cells and mammalian breast cancer (MBC) cells. Experiments were performed by exposing the HEK cells to counter-propagating laser beams for 30 seconds at powers ranging from 100 mW to 561 mW. It was observed that the percentage of cell deformation increased from 16.7% at 100 mW to 40.5% at 561 mW optical power. The …

Discrimination And Behavioral Responses To Communication Signals Compared Across Apteronotids., Danielle Leigh Dillon-Seeger

Graduate Theses, Dissertations, and Problem Reports (ETD)

Sensory systems are often uniquely tailored to encode behaviorally relevant signals and comparative studies across species can thus reveal how evolutionary changes shape sensory functions. The structure of communication signals varies widely between ghost knifefish species. Recent findings suggest that the nervous system co-adapted to the various signal structures observed across species to support different sensory behaviors. The aim for this thesis was to compare the sensory behavior of 3 species of ghost knifefish to contrast their behavioral performance with the known differences in neurophysiology. We hypothesize that for the different signal types and species, the ability to discriminate small …

Browsing Via Sonification, Taylor C. Cutlip

Graduate Theses, Dissertations, and Problem Reports (ETD)

Based on unexpected results in her previous research, Dr. Frances Van Scoy became inspired to develop a tool that allows the user to navigate spaces using auditory instead of visual cues to detect objects or anomalies in a given space in an effort to overcome the encountered obstacles. This problem report details the work of one of her grad students in exploring different open source software for developing the tool as well as research into gestures and other considerations when furthering this research into the third dimension at a future date.

Utilization Of Scale In Keypoint Detection And Feature Description, Andrew P. Rhodes

Graduate Theses, Dissertations, and Problem Reports (ETD)

Ubiquitous availability of inexpensive three dimensional (3D) sensors has led to an abundance of keypoint detection and feature description techniques for point-clouds. While some recent methods utilize color along with geometric information, most only implicitly discuss -- if not completely disregard -- the information provided by scale. Scale is an inherent characteristic of any keypoint or feature that describes its physical size or region of support.

Exploiting information provided by scale facilitates the processes of keypoint detection and feature description. A 3D scale-space, extended from robust and popular 2D methods, is constructed to diffuse a signal on triangulated meshes. Methods …

Biology Ii Lab, Megan Wagner

Syllabus Repository

No abstract provided.