Digital Commons Network^™

Bio-Inspired Learning And Hardware Acceleration With Emerging Memories, Shruti R. Kulkarni

Dissertations

Machine Learning has permeated many aspects of engineering, ranging from the Internet of Things (IoT) applications to big data analytics. While computing resources available to implement these algorithms have become more powerful, both in terms of the complexity of problems that can be solved and the overall computing speed, the huge energy costs involved remains a significant challenge. The human brain, which has evolved over millions of years, is widely accepted as the most efficient control and cognitive processing platform. Neuro-biological studies have established that information processing in the human brain relies on impulse like signals emitted by neurons called …

Amyloid Proteins And Fibrils Stability, Farbod Mahmoudinobar

Dissertations

Compared to globular proteins that have a stable native structure, intrinsically disordered peptides (IDP) sample an ensemble of structures without folding into a native conformation.One example of IDP is the amyloid-beta(Abeta) protein which is the main constituent of senile plaques in the brain of Alzheimer's patients.Understanding the process by which IDPs undergo structural changes to form oligomers that eventually aggregate into senile plaques/amyloid fibrils may significantly advance the development of novel therapeutic methods to treat neurodegenerative diseases, for which there is no cure to date. This dissertation has two main objectives. The first one is to investigate and identify structural …

Quantitative Detection Of Levofloxacin Hydrochloride By Differential Pulse Stripping Voltammetry With Electrodeposited Bismuth Film Electrodes, Zi-Ying Guo, Zuo-Peng Li, Jiang Li, Jian-Guo Zhao, Feng Feng

Journal of Electrochemistry

In this study, differential pulse stripping voltammetry was developed for the quantitative detection of levofloxacin hydrochloride indirectly. Levofloxacin hydrochloride contains organic amine, which can be precipitated upon interaction with Zn(SCN)₄^2-. By means of differential pulse stripping voltammetry, the concentration of Zn²⁺ can be determined using an in-situ formed bismuth film electrode, which allows determining indirectly the amount of levofloxacine hydrochloride. The linearity equation, I = 1.1401c - 0.5309 with the correlative coefficient R = 0.9979, was presented in the experiment. The results showed that this approach is very sensitive, having a limitation of detection of 3.18 …

The Values Of Warm-Season Native Perennial Grasses Grown For Pasture Or Biofuel In The Southern Great Plains, Usa, James K. Rogers, Bryan Nichols, Jon T. Biermacher, Jagadeesh Mosali

IGC Proceedings (1977-2023)

The Renewable Fuel Standard under the Energy Independence and Security Act of 2007 mandated the production of 136 billion liters of cellulosic biofuel by 2022. Switchgrass (Panicum virgatum) has been identified as a primary feedstock because it is a perennial, produces high yields and is adapted to a wide environmental range. Development of the cellulosic biofuel industry has been slow. A reason for this slow development is lack of available feedstock driven by lack of a developed market. Rather than considering switchgrass only as a dedicated biofuel feedstock, we examined its potential both for grazing and biofuel feedstock. …

Generalized Matrix Decomposition Regression: Estimation And Inference For Two-Way Structured Data, Yue Wang, Ali Shojaie, Tim Randolph, Jing Ma

UW Biostatistics Working Paper Series

Analysis of two-way structured data, i.e., data with structures among both variables and samples, is becoming increasingly common in ecology, biology and neuro-science. Classical dimension-reduction tools, such as the singular value decomposition (SVD), may perform poorly for two-way structured data. The generalized matrix decomposition (GMD, Allen et al., 2014) extends the SVD to two-way structured data and thus constructs singular vectors that account for both structures. While the GMD is a useful dimension-reduction tool for exploratory analysis of two-way structured data, it is unsupervised and cannot be used to assess the association between such data and an outcome of interest. …

An Investigation Of The Potentials Of 2-[(2-Hydroxyphenyl) Methylidene] Hydrazine-1-Carbothioamide And Its Mn(Ii) And Zn(Ii) Complexes As Antimicrobial Agents, Umar Sani, Musbahu Yahaya, Dailami S. Adam

Tanzania Journal of Science

Antibiotic resistance as a result of misuse, overuse or abuse of drugs is an issue of serious concern world over. The quest for more active and robust antimicrobial agents remains a scientific challenge and requires multimillion-dollar investment in the area of drug design and development. Here in, we report the synthesis and characterisation of a tridentate thiosemicarbazone (2-[(2-hydroxyphenyl)methylidene]hydrazine-1-carbothioamide) (HL) from salicylaldehyde and thiosemicarbazide. Its complexes with Mn(II) and Zn(II) were prepared following similar technique and characterised by melting point, FT-IR, UV –visible spectrophotometry, and elemental analysis. The Mn(II) complex showed paramagnetism with a magnetic moment value of 5.80 BM while …

Nanomaterials For Biosensing Lipopolysaccharide, Palak Sondhi, Helal Maruf, Keith Stine

Chemistry & Biochemistry Faculty Works

Lipopolysaccharides (LPS) are endotoxins, hazardous and toxic inflammatory stimulators released from the outer membrane of Gram-negative bacteria, and are the major cause of septic shock giving rise to millions of fatal illnesses worldwide. There is an urgent need to identify and detect these molecules selectively and rapidly. Pathogen detection has been done by traditional as well as biosensor-based methods. Nanomaterial based biosensors can assist in achieving these goals and have tremendous potential. The biosensing techniques developed are low-cost, easy to operate, and give a fast response. Due to extremely small size, large surface area, and scope for surface modification, nanomaterials …

Replication Study: Biomechanical Remodeling Of The Microenvironment By Stromal Caveolin-1 Favors Tumor Invasion And Metastasis, Mee Rie Sheen, Jennifer L. Fields, Brian Northan, Judith Lacoste, Lay-Hong Ang, Steven Fiering

Dartmouth Scholarship

As part of the Reproducibility Project: Cancer Biology we published a Registered Report (Fiering et al., 2015) that described how we intended to replicate selected experiments from the paper ‘Biomechanical remodeling of the microenvironment by stromal caveolin-1 favors tumor invasion and metastasis’ (Goetz et al., 2011). Here we report the results. Primary mouse embryonic fibroblasts (pMEFs) expressing caveolin 1 (Cav1WT) demonstrated increased extracellular matrix remodeling in vitro compared to Cav1 deficient (Cav1KO) pMEFs, similar to the original study (Goetz et al., 2011). In vivo, we found higher levels of intratumoral stroma remodeling, determined by fibronectin fiber orientation, in tumors …

Finite Element Analysis Of The Mechanisms Of Impact Mitigation Inherent To The North American Bison (Bison Bison) Skull, Andrea Karen Persons

Theses and Dissertations

North American bison (Bovidae: Bison bison) incur blunt impacts to the interparietal and frontal bones when they engage in head-to-head fights. To investigate the impact mitigation of these bones, a finite element analysis of the skull under loading conditions was performed. Based on anatomical and histological studies, the interparietal and frontal bones are both comprised of a combination of haversian and plexiform bone, and are both underlain by bony septa. Additionally, the interparietal bone is thicker than the frontal. Data regarding the mechanical properties of bison bone are scarce, but the results of a phylogenetic analysis infer that the material …

Localized Dielectric Loss Heating In Dielectrophoresis Devices, Tae Joon Kwak, Imtiaz Hossen, Rashid Bashir, Woo-Jin Chang, Chung-Hoon Lee

Electrical and Computer Engineering Faculty Research and Publications

Temperature increases during dielectrophoresis (DEP) can affect the response of biological entities, and ignoring the effect can result in misleading analysis. The heating mechanism of a DEP device is typically considered to be the result of Joule heating and is overlooked without an appropriate analysis. Our experiment and analysis indicate that the heating mechanism is due to the dielectric loss (Debye relaxation). A temperature increase between interdigitated electrodes (IDEs) has been measured with an integrated micro temperature sensor between IDEs to be as high as 70 °C at 1.5 MHz with a 30 V_pp applied voltage to our ultra-low …

A Hierarchical Machine Learning Model To Discover Gleason Grade-Specific Biomarkers In Prostate Cancer, Osama Hamzeh, Abedalrhman Alkhateeb, Zhuoran Zheng, Srinath Kandalam, Crystal Leung, Govindaraja Atikukke, Dora Cavallo-Medved, Nallasivam Palanisamy, Luis Rueda

Urology Articles

Background: One of the most common cancers that affect North American men and men worldwide is prostate cancer. The Gleason score is a pathological grading system to examine the potential aggressiveness of the disease in the prostate tissue. Advancements in computing and next-generation sequencing technology now allow us to study the genomic profiles of patients in association with their different Gleason scores more accurately and effectively.

Methods: In this study, we used a novel machine learning method to analyse gene expression of prostate tumours with different Gleason scores, and identify potential genetic biomarkers for each Gleason group. We obtained a …

Ramucirumab: A New Agent For Advanced Or Metastatic Gastric Junction Adenocarcinoma, Adam Smith, Rebecca Worden, Jessica Hoffert, Brendon Rasor, Hannah Stewart, David Koh

Pharmacy and Wellness Review

Ramucirumab (Cyramza®), approved April 21, 2014, is a vascular endothelial growth factor receptor 2 (VEGFR2) antagonist with a U.S. Food and Drug Administration (FDA) indication for the treatment of advanced or metastatic gastric/gastroesophageal junction adenocarcinoma. Gastric cancer is a prevalent cancer in the United States with a poor prognosis. The phase 3 trial, REGARD, shows that ramucirumab, when used within four months after the last dose of first-line chemotherapy or six months after the last dose of adjuvant chemotherapy, increases overall survival. Also, ramucirumab has been included in combination therapy, such as in the RAINBOW trial, which demonstrated its effectiveness …

A Multivariate Ecological Approach To Delineate Unionid Freshwater Mussel Species, Ava M. Laszlo

Biology Theses

Freshwater mussels represent one of the most imperiled faunal groups on the planet and are critical to freshwater ecosystems. If mussel species are not carefully defined, our conservation plans may miss differences in the habitat needs of different species and the conservation strategies may not be as successful. Because ecological niche models can be used to provide evidence to support similar or dissimilar ecological niches and habitat requirements, I used modelling to forecast suitable habitat for Fusconaia askewi and F. lananensis, two purported threatened Texas species. The modeling results indicated that these species are not ecologically different. Based upon …

Modeling The Effects Of Distribution System Topology On Water Quality, Chun-Ying Chao

McKelvey School of Engineering Graduate Student Theses & Dissertations

Inadequate treatment of drinking water causes the formation of disinfection by-products and the regrowth of harmful microbial species. Various studies have addressed the problem of water quality monitoring, but very few have employed topological analysis, a valuable mathematical tool widely applied in biological, business, and social research. This thesis examines the relationship between the topological properties of water distribution systems and water-quality models. In particular, the research proposes a novel framework for mapping network topological attributes to water-quality models. This research adopts topological metrics to assess the accuracy of the predictions of chlorine concentrations in dead ends. It examines four …

Pharmacognostical Study Of Combretum Aculeatum Vent. Growing In Sudan, Kamal M. Hamad, Manal M. Sabry, Sabah H. Elgayed, Abdel-Rahman El Shabrawy, Ahlam M. El-Fishawy

Bulletin of Faculty of Pharmacy Cairo University

Aim of Study: Combretum aculeatum Vent is commonly used in traditional medicine but no published botanical characterization was available. Macro- and microscopical characters of the aerial parts (leaf, stem and bark) have been studied with the aim to find the diagnostic features, and pointed towards their identification in both entire and powdered form. Results: Proximate analysis like moisture contents (7.52 %), total ash (14.09%), water-soluble ash (0.7%), acid-insoluble ash (2.99%) and alcohol soluble extract (9.5%) were determined. Percentage yield of sequential extractive values of sample in petroleum ether (1.85%), methylene chloride (0.92%), ethyl acetate (2.2%) and n-butanol (1.66%) were also …

Efficient And Robust Nk-Cell Transduction With Baboon Envelope Pseudotyped Lentivector., Aurelien B L Colamartino, William Lemieux, Panojot Bifsha, Simon Nicoletti, Nitin Chakravarti, Joaquín Sanz, Hugo Roméro, Silvia Selleri, Kathie Béland, Mélanie Guiot, Camille Tremblay-Laganière, Renée Dicaire, Luis Barreiro, Dean A Lee, Els Verhoeyen, Elie Haddad

Department of Medical Oncology Faculty Papers

NK-cell resistance to transduction is a major technical hurdle for developing NK-cell immunotherapy. By using Baboon envelope pseudotyped lentiviral vectors (BaEV-LVs) encoding eGFP, we obtained a transduction rate of 23.0 ± 6.6% (mean ± SD) in freshly-isolated human NK-cells (FI-NK) and 83.4 ± 10.1% (mean ± SD) in NK-cells obtained from the NK-cell Activation and Expansion System (NKAES), with a sustained transgene expression for at least 21 days. BaEV-LVs outperformed Vesicular Stomatitis Virus type-G (VSV-G)-, RD114- and Measles Virus (MV)- pseudotyped LVs (p < 0.0001). mRNA expression of both BaEV receptors, ASCT1 and ASCT2, was detected in FI-NK and NKAES, with higher expression in NKAES. Transduction with BaEV-LVs encoding for CAR-CD22 resulted in robust CAR-expression on 38.3 ± 23.8% (mean ± SD) of NKAES cells, leading to specific killing of NK-resistant pre-B-ALL-RS4;11 cell line. Using a larger vector encoding a dual CD19/CD22-CAR, we were able to transduce and re-expand dual-CAR-expressing NKAES, even with lower viral titer. These dual-CAR-NK efficiently killed both CD19KO- and CD22KO-RS4;11 cells. Our results suggest that BaEV-LVs may efficiently enable NK-cell biological studies and translation of NK-cell-based immunotherapy to the clinic.

Aglycon Modifications Of Ipomoeassin F: Synthetic Route Development And Analog Synthesis To Enable Further Sar Studies, Eric Barber

Graduate Theses and Dissertations

The ipomoeassin family of resin glycosides were discovered to have a high potency against numerous cancer cell line, with ipomoeassin F being the most potent among the family of natural products. Interestingly, one of the few differences between ipomoeassin F and the other compounds is the length of the fatty-acid derived aglycon. As the mechanism of action for this family of resin glycosides is unknown and didn’t have any significant COMPARE correlation with the recorded anticancer agents in the National Cancer Institute (NCI), further SAR studies are needed. Drawing on the differences between ipomoeassin F and the other ipomoeassins, it …

Information Visualization Research Publications During 1990-2018: A Scientometric Analysis, Kunwar Singh, Abhishek Ranjan, Somesh Rai

Library Philosophy and Practice (e-journal)

To understand the history and research status of information visualization, information visualization research citation data has been collected from the Scopus expanded during the period from 1990 to 2018. Results indicated that the research of information visualization has increased during the studied 29-year period. The country with the highest research output was the United States with 1996 publications, while the institution with the highest research output was the CNRS Centre National de la Recherche Scientifique. The majority of research articles have been contributed from developed countries. It also revealed that developed countries have more research advantages in comparison to developing …

Investigating Administrators’ Resistance To Implementing Restorative Practices, Beri Deister

Electronic Theses and Dissertations

In this case study, the researcher investigated the barriers to school administrators’ implementation of restorative practices as a management approach to student behavior. Based on the claim that restorative practices is a promising alternative to exclusionary disciplinary placements for changing behavior, the researcher used an emergent explanatory mixed methods design to better understand administrators’ resistance to change despite overwhelming evidence that exclusionary disciplinary practices are the primary contributors to national trends in disciplinary disproportionality and institutional discrimination. The researcher identified and analyzed barriers to create recommendations for addressing administrators’ resistance through organizational change strategies using systems theory.

Elevated Glucose Acts Directly On Osteocytes To Increase Sclerostin Expression In Diabetes, Donna M. Pacicca, Tammy Brown, Dara Watkins, Karen Kover, Yun Yan, Matthew Prideaux, Lynda Bonewald

Manuscripts, Articles, Book Chapters and Other Papers

© 2019, The Author(s).

Bone quality in diabetic patients is compromised, leading to weaker bones and increased fracture risk. However, the mechanism by which this occurs in diabetic bone remains to be fully elucidated. We hypothesized that elevated glucose and glucose variation would affect the function of osteocytes, essential regulators of bone homeostasis and quality. To first test this hypothesis, we used the IDG-SW3 osteocyte-like cell line to examine the effects of glucose levels on osteocyte function and viability in vitro. We confirmed our in vitro findings using the in vivo streptozotocin-induced (STZ) diabetic rat model and ex-vivo cultured osteocytes …

A Deda Family Membrane Protein Is Required For Burkholderia Thailandensis Colistin Resistance, Pradip R. Panta, Sujeet Kumar, Caroline F. Stafford, Caitlin E. Billiot, Martin V. Douglass, Carmen M. Herrera, M. Stephen Trent, William T. Doerrler

Faculty Publications

© Copyright © 2019 Panta, Kumar, Stafford, Billiot, Douglass, Herrera, Trent and Doerrler. Colistin is a “last resort” antibiotic for treatment of infections caused by some multidrug resistant Gram-negative bacterial pathogens. Resistance to colistin varies between bacterial species. Some Gram-negative bacteria such as Burkholderia spp. are intrinsically resistant to very high levels of colistin with minimal inhibitory concentrations (MIC) often above 0.5 mg/ml. We have previously shown DedA family proteins YqjA and YghB are conserved membrane transporters required for alkaline tolerance and resistance to several classes of dyes and antibiotics in Escherichia coli. Here, we show that a DedA family …

Learning To Think In The Language Of Strangers: Indigenous Education In A Colonized And Globalized Pacific, Konai Helu Thaman

International Journal of Human Rights Education

This notes from the field article is about my personal, educational, and professional journeys as an Indigenous woman living and working in the small island states of Oceania. My own story describes the struggles that continue today among many young Indigenous students, be they in school or in higher education institutions with structures and processes that do not take their cultural backgrounds or identities into consideration. The results are often damaging both to the students, as well as to the institutions themselves. However, in this work, I advocate for the inclusion of Indigenous knowledges in education, as I have for …

Wildlife Survey Of National Parks To Assess Reptilian Biodiversity, Ajk, Jibran Haider, Inayatullah Malik, Sabiha Shamim

Journal of Bioresource Management

The class Reptilia belongs to phylum Chordata. This group forms a large community of the land vertebrates. However, they remain relatively under-examined. Roll et al. (2017) studied the global distribution of more than 10,000 reptiles. Nearly194 reptilian species have been reported from Pakistan (WWF, n.d.). Five protected parks were studied from February 2008 to May 2010. Dhirkot Nature Reserve (DNR), Banjosa Nature Reserve (BNR), Tolipir National Park (TNP), Pir Chanasi National Park (PCNP) and Pir Lasura National Park (PLNP) were considered. Fifteen species of reptiles were observed in TNP. Ten species of reptiles were recorded from PCNP. Ten species of …

Medical School Watercooler Newsletter - October 27, 2019, Lindsey Lyle

Watercooler Newsletter

This is the October 27, 2019 edition of the Frederick P. Whiddon College of Medicine's Newsletter - Watercooler.

Contents Include:

Simulations transport medical students inside human organs

Department of Surgery to host Frazer/Leigh Memorial Lecture

Macaluso examines federal efforts on tick-borne diseases

Magnetocaloric Effect Near Room Temperature In Quintenary And Sextenary Heusler Alloys, Benjamin D. White, R. I. Barabash, O. M. Barabash, I. Jeon, M. B. Maple

All Faculty Scholarship for the College of the Sciences

An inverse magnetocaloric effect is studied in Ni₂Mn_1+xX_1-x-type Heusler alloys. Principally known for their shape-memory properties, these alloys also exhibit significant entropy and temperature changes (ΔS and ΔT_Ad, respectively) under adiabatic conditions when a modest magnetic field is applied. We investigated the impact on magnetocaloric properties of introducing substantial chemical disorder on the X-site (X = Si, Ga, In), of replacing Ni with nonmagnetic Ag, and of replacing a small amount of Mn with Gd. While a reduction in ΔS is observed in the first two cases, we observe a significant enhancement …

Cpue Standardization For The Pacific Saury (Cololabis Saira) Fishery In The Northwest Pacific, Wen-Bin Huang, Chih-Hao Hsieh, Tai-Sheng Chiu, Wei-Ting Hsu, Chih-Shin Chen

Journal of Marine Science and Technology–Taiwan

In stock assessment and fisheries management, the standardization of catch per unit effort (CPUE) is critical to derive an effective index of the abundance of exploited fish stocks. In addition to developing various statistical models, a method including the relative fishing power (RFP) of individual vessels has been developed from an intuition concept and applied to bottom trawl fisheries using logbookbased data. This is a convenient and traightforward approach for standardizing the catch-effort data of a fishery. The Pacific saury is a pelagic fish species, and its stock in the Northwest Pacific has been targeted by international fleets since the …

Survival And Development Of Striacosta Albicosta (Smith) (Lepidoptera: Noctuidae) Immature Stages On Dry Beans, Non-Bt, Cry1f, And Vip3a Maize, Débora G. Montezano, Thomas E. Hunt, Alexandre Specht, Priscila C. Luz, Julie A. Peterson

Department of Entomology: Faculty Publications

Striacosta albicosta is a crop pest that causes economic damage in the United States and Canada. Only maize and dry beans are shown to be suitable hosts, since larval development is incomplete on other hosts. The objective of this study was to describe the developmental parameters of immature stages of S. albicosta feeding on dry beans, non-Bt, Cry1F, and Vip3A maize. For Vip3A, mortality was 100% after 24 h. Larvae feeding on non-Bt maize had the highest larval survival (70.6%) compared to the other hosts. Maize expressing Cry1F had higher survival (31.3%) than dry beans (26.0%). Larvae feeding on dry …

Syntheses, Characterization, And Preliminary Evaluation Of Potential Ruthenium Anticancer Complexes Containing Schiff Base Ligands, Stephen Mensah

Theses and Dissertations

Platinum-based drugs have over the years been administered in the treatment of tumours.

Unfortunately, platinum resistance and the severe side effects associated with the treatments has necessitated the research for new anti-cancer drugs. Ruthenium(II) and Ruthenium(III) complexes have shown promise as useful alternative anticancer agents. The lead candidates include the Ru(II) complex RAPTA-C, a ruthenium(II)-arene complex [Ru(η6-p-cymene)Cl2(1,3,5-triaza-7-phosphaadamantane)] and the Ru(III) complex NAMI-A [imidazoleH][trans-Ru(imidazole) (dimethyl sulfoxide)Cl4]. Both compounds have shown potent cytotoxic activity in several primary human tumor models. Unfortunately, NAMI-A could not advance in clinical evaluations due to limited efficacy in vivo, while the clinical evaluation of RAPTA-C is unknown. …

Leaf And Petiole Extract Of Centella Asiatica Are Potential For Antifertility And Antimicrobial Material, Susie Amilah, Sukarjati Sukarjati, Diaz P Rachmatin, Masruroh Masruroh

Folia Medica Indonesiana

Ethanol extract of leaves and petiole of pegagan (Centella asiatica) is potential as antimicrobial and antifertility. This study was to investigate whether ethanol extracts of leaf and petiole of Centella asiatica has potential as an antimicrobial and can decrease sperm quality and spermatogenic cells of mice. This was a randomized controlled study using Centella asiatica plant from which we made ethanol extract. The extract of the leaves and petiole of Centella asiatica was subjected to antimicrobial test using the bacteria S. aureus, S. epidermidis, and A. aerogenes. Then the observation was done after a 24-hour-old bacterial cultures by measuring the …

Interaction Of A Platinum Triamine Complex Having A Seven-Membered Chelate Ring With N-Acetyl-Lmethionine And Guanosine 5'-Monophosphate, Jae Ko

Masters Theses & Specialist Projects

In the 1960s, Rosenberg and his colleagues confirmed the anti-cancer activity of cisplatin. Although cisplatin was capable of killing testicular cancer cells there were also serious side effects. It was necessary to find alternate ways of overcoming side effects, and soon many researchers have discovered novel platinum compounds that show similar reactivity. Recently, replacing one chloride group to a heterocyclic amine group showed significant cytotoxicity with a different binding activity than cisplatin. Previously in our lab, [Pt(Me5dien)(NO3)]+ and [Pt(Et2dien)Cl]+ have been synthesized and reacted with NAcetyl- L-methionine (N-AcMet) and Guanosine 5’-monophosphate (5’-GMP) showed unusual reactivity. Unlike most previously studied platinum …