Digital Commons Network^™

Sociodemographic And Climatic Factors Shaping The Development Of Drought Policies In Major U.S. Cities, Riana S. Gayle

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In most parts of the world, drought is an inevitable and natural occurrence. However, as the climate continues to warm, and populations grow and expand, the negative impacts of this extreme weather event are predicted to become more pronounced. This leads many communities and stakeholders to question what is being done to prepare society for widespread drought? The following research determines different social and atmospheric characteristics that affect a city’s likelihood of having a drought policy in place.To do this, a thorough search was conducted at the city level to determine where drought policies are currently located in theU.S. The …

Plant Evolutionary Response To Climate Change: Detecting Adaptation Across Experimental And Natural Precipitation Gradients, Jacqueline J. Peña

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Global climate change is a real-time problem that presents threats to many species. Climate change can alter ecosystems and may lead to species extinction. Species can respond to climate change by moving to a better environment or adapting. Therefore, it is necessary to rely on several approaches and perspectives to anticipate ecological impacts of climate change. A common strategy uses models to understand how populations respond to different climate scenarios. Ecological models have helped us understand population persistence, but they often ignore how populations adapt to environmental stress. Adaptive evolution has been ignored because it was assumed that evolution was …

Organic Matter Sources, Composition, And Quality In Rivers And Experimental Streams, Julia E. Kelso

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Organic matter (OM) is often considered the “currency” for ecosystem processes, such as respiration and primary production. OM in aquatic ecosystems is derived from multiple sources, and is a complex mixture of thousands of different chemical constituents. Therefore, it is difficult to identify all the sources of OM that enter and exit aquatic ecosystems. As humans develop undisturbed land, the rate at which terrestrial OM (e.g. soil and plants) and associated nutrients (e.g. nitrogen) enters rivers has increased. Increased nutrients may lead to increased primary production from aquatic plants and algae, potentially causing eutrophication and harmful algal blooms. …

Interactions Between Biochar And Compost In Organic Winter Wheat Production And Soil Quality Under Dryland Conditions, Phearen Kit Miller

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Organic wheat grown under dryland conditions encounters challenges such as limited nutrients and water. Maintaining organic wheat production requires solutions to these problems in order to retain economic sustainability for the farmers.

Research on biochar and compost have been conducted globally. Despite well known benefits of compost on soil and crop production, few organic farmers apply compost to their fields. Research on biochar is still new. Biochar is charcoal created from pyrolyzing agricultural material under conditions of low oxygen and high heat. Many studies claim that biochar is a valuable soil amendment for improving organic production and reducing environmental pollution …

An Evaluation Of Bull Trout Movement Dynamics In The Walla Walla River, Courtney Newlon

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Bull trout are a fish species listed as threatened under the Endangered Species Act. Historically, they ranged from Northern California at the southernmost extent, into Canada at the northern most extent, and east into Nevada and Montana. Bull trout are highly migratory and require large, unfragmented habitats to persist and are thus highly susceptible to human induced land-use practices. The goal of my thesis was to obtain a better understanding of bull trout movement patterns in the Walla Walla River, Washington using complimentary techniques; Passive Integrated Transponder (PIT) technology and otolith microchemistry. PIT tags can be injected into a fish …

Geospatial Modeling Of Land Cover Change In The Chocó-Darien Global Ecoregion Of South America: Assessing Proximate Causes And Underlying Drivers Of Deforestation And Reforestation, José Camilo Fagua

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Chocó-Darien Global Ecoregion (CGE) in South America is one of 25 global biodiversity hotspots prioritized for conservation. I performed the first land-use and land-cover (LULC) change analysis for the entire CGE in this dissertation. There were three main objectives: 1) Select the best available imagery to build annual land-use and land-cover maps from 2001 to 2015 across the CGE. 2) Model LULC across the CGE to assess forest change trends from 2002 to 2015 and identify the effect of proximate causes of deforestation and reforestation. 3) Estimate the effects of underlying drivers on deforestation and reforestation across the CGE …

Insomnia And Use Of Sleep Medications In Predicting Risk Of Alzheimer's Disease In The Cache County Study, Elizabeth Kathleen Vernon

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Over 71 million Americans will be over the age of 65 by the year 2030. With this rise in adults aged 65 years and older also comes an exponential rise in the estimated number of individuals with Alzheimer’s disease (AD); this number is expected to exceed 24 million Americans by the year 2040. The number one risk factor for AD is older age; this factor is also associated with an increased risk in developing a sleep disturbance. Sleep disturbances have been associated with an increased risk of cancer, heart disease, and decline in overall health. Recent research has examined the …

Maternal Depression In The United States: A Geographic Comparison Between Geographic Regions And Rurality, Samantha J. Patterson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Health disparities exist between rural and urban areas but geographic comparisons of mental health are less studied and conclusive. Maternal depression has not been examined by region or rurality in the United States but might be influenced by geographic locations due to the variance of social support and healthcare available in some locations compared to others. The research focuses on (1) whether rurality increases a mother’s risk of experiencing depression and (2) if region impacts a mother’s risk of depression. I used the NESARC-III data that included three general depressive disorders: major depressive episode, major depressive disorder, and dysthymia. Regions …

Investigation Of The Molecular Mechanisms Of The Shigella Type Iii Secretion System Tip Complex, Abram R. Bernard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Shigella are bacteria that are responsible for millions of infections and hundreds of thousands of deaths every year. The emergence of antibiotic resistant Shigella adds to the potentially devastating effect that these bacteria can have on human health. Shigella flexneri utilize specialized molecular machinery called the Type III secretion system to infect humans and cause disease. Research of this machinery promises to provide the knowledge, tools, and direction for the development of new avenues to combat shigellosis. This dissertation presents studies of two Shigella proteins, invasion plasmid antigens C and D (IpaC and IpaD). These proteins are part of a …

Comparing Performance Of Gene Set Test Methods Using Biologically Relevant Simulated Data, Richard M. Lambert

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Today we know that there are many genetically driven diseases and health conditions. These problems often manifest only when a set of genes are either active or inactive. Recent technology allows us to measure the activity level of genes in cells, which we call gene expression. It is of great interest to society to be able to statistically compare the gene expression of a large number of genes between two or more groups. For example, we may want to compare the gene expression of a group of cancer patients with a group of non-cancer patients to better understand the genetic …

“I Really Don’T Look For Certifications, It All Has To Do With Personal Relationships”: The Construction Of A Meat Philosophy And Innovation Adoption By Culinary Professionals In The Rocky Mountain Region, Kailie B. Leggett

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Demand for new methods of beef production is rising due to concern over potential impacts on human health, animal welfare, and the environment. Researchers at Utah State University have developed a method of beef production from cattle finished on tannin-containing legume forages in the Rocky Mountain Region in order to address those concerns. To ensure success of this product, the demand and marketability needed to be assessed. Food values addressed through new production standards and certifications are communicated through labeling by culinary professionals in the kitchen and behind service counters. This research study utilized qualitative methods to understand how culinary …

Identification And Engineering Of Nonribosomal Peptide Biosynthetic Systems, Fuchao Xu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This research focuses on the understanding and engineering of nonribosomal peptide biosynthetic pathways in Streptomyces coelicolor CH999, Escherichia coli BAP1 and Saccharomyces cerevisiae BJ5464-NpgA. The biosynthetic systems of indigoidine from bacteria and beauvericin/bassianolide from fungi were studied in this research. The production of these valuble products was significantly increased by enhancing their synthetic pathway with metabolic engineering approaches.

Indigoidine is a bacterial natural product with antioxidant and antimicrobial activities. Its bright blue color resembles the industrial dye indigo, thus representing a new natural blue dye that may find uses in industry. Indigo is a dark blue crystalline powder and has …

Statistical Methods To Account For Gene-Level Covariates In Normalization Of High-Dimensional Read-Count Data, Lauren Holt Lenz

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The goal of genetic-based cancer research is often to identify which genes behave differently in cancerous and healthy tissue. This difference in behavior, referred to as differential expression, may lead researchers to more targeted preventative care and treatment. One way to measure the expression of genes is though a process called RNA-Seq, that takes physical tissue samples and maps gene products and fragments in the sample back to the gene that created it, resulting in a large read-count matrix with genes in the rows and a column for each sample. The read-counts for tumor and normal samples are then compared …

The Macroinvertebrate And Fish Communities Of In-Stream Beaver Ponds In Northeastern Utah, Susan Washko

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Beavers were virtually extirpated from North America during the fur trade, but populations have since recovered. Dams built by recolonizing beaver alter stream habitat by forming deep, slow ponds within the streams. Such changes to the habitat is likely to have consequences for organisms such as macroinvertebrates and fish. The objective of this study was to identify the differences in the macroinvertebrate and trout community in beaver ponds and lotic (e.g. flowing reaches of a stream) reaches in tributaries to the Logan River in northeastern Utah. The macroinvertebrate community of beaver ponds had fewer species, fewer numbers, and lower biomass …

Investigating Rapid Concrete Repair Materials And Admixtures, Ivan Quezada

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This dissertation presents a literature review of the state-of-practice for the use of IC in concrete mixtures and how structural engineers and construction engineers can adapt IC to their present and future work. Current high early strength concrete mixtures have natural cracking and shrinkage problems due to the high content of cementitious material or their chemical components. Using IC allows for early strength, enhanced durability, reduced shrinkage and a better curing by providing water that can be absorbed by the cement past after the final set. Rapid hydration and high early strength Portland cement and calcium sulfoaluminate (CSA) concretes are …

A Sociological Evaluation Of A Large Team Science Project: The Iutah Experience, K. Taylor Dean

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Many contemporary scientific research projects are composed of large numbers of researchers working together to provide solutions to social issues that affect our society. In an attempt to understand and address these issues, projects have been implemented where researchers from a wide variety of disciplines come together and collaborate. As this research includes a variety researchers, it requires a unique approach. Questions such as how to make these projects as effective as possible, how to properly evaluate these projects, and how to gauge the quality and success of these projects need to be answered.

These are directly addressed in this …

Training Non-Board Certified Behavior Analyst (Bcba) Behavior Specialists To Conduct Trial-Based Functional Analyses In Residential Settings, Devon S. Millington

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study investigated a process for identifying the reasons why a person with an intellectual disability has problem behaviors. This process is called a trial-based functional analysis (TBFA). The researchers wanted to know if a person who was not an expert behavior analyst could be trained to perform the TBFA and if the results obtained from the TBFA could be used to create a program to reduce the problem behavior of a person with an intellectual disability living in a community-based group home for persons with disabilities. The results of this study show that a person who is not an …

Droplet Impact Onto Super-Hydrophobic Surfaces And Determining The Response To Heat And Light Of Terrestrial Cyanobacteria, Benjamin B. Lovett

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This thesis examines droplets striking water repelling surfaces as well as the movement of a soil based bacteria under various light and heat conditions. Droplet impact studies have shown that introducing a macroscopic feature to a water repelling surface can reduce the amount of time that droplet is in contact with the surface. By manipulating water droplets to impact different sized needles at varying speeds, we present how a needle can induce a similar reduction in the residence time of the droplet to more widely studied features. Results show the spreading and lift-off characteristics of the droplet are dependent on …

Application Of Winslamm To Evaluate The Effect Of Green Infrastructure Implementation In Northern Utah, Rosa A. Fernández Velásquez

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study provides an evaluation of the performance of the WinSLAMM model in two cities of northern Utah, a region in which it has not been validated to date. Runoff volumes for a series of events from 2015 to 2017 were calculated for six study areas. These results were compared to model outputs to evaluate the prediction accuracy. The model performed poorly when default parameters where used, as expected. Thus, the calibration of runoff coefficient was done with local data. Total suspended solids (TSS), total phosphorus (TP) and total dissolved phosphorus (TDP) were also evaluated and calibrations were developed. The …

Efficacy Of Translocation As A Management Tool For Urban Mule Deer In Utah, Channing R. Howard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

An increase in urbanization in the United States has led to an increase in human-wildlife interactions with deer (Odocoileus spp.) which have been able to adapt and thrive in these urban environments. In Utah, urbanization has occurred along the Wasatch Front which was once traditional mule deer (Odocoileus hemionus) winter range habitat. This urban expansion coupled with an increasing use of these urban areas by mule deer, have led to increasing conflicts with deer. Overabundant urban deer have led to increased concerns over safety from deer-vehicle collisions, and damage to personal property including gardens and landscaping. …

A Simple Metabolic Switch May Activate Apomixis In Arabidopsis Thaliana, David Alan Sherwood

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Apomixis, asexual or clonal seed production in plants, can decrease the cost of producing hybrid seed and enable currently open pollinated crops to be converted to more vigorous and higher yielding hybrids that can reproduce themselves through their own seed. Sexual reproduction may be triggered by a programmed stress signaling event that occurs in both the meiocyte, just prior to meiosis, and later in the egg just prior to embryo sac maturation. The prevention of stress signaling and the activation of a pro-growth signal prior to meiosis triggered apomeiosis, the first half of apomixis. The same approach was used prior …

Influence Of Environmental Variables On Survival Rates Of Pronghorn (Antilocapra Americana) Neonates Across Idaho, Brett R. Panting

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study was completed to better understand pronghorn antelope (Antilocapra americana) populations found throughout Idaho. Antelope were studied in three separate and distinct study areas. The Big Desert, Camas Prairie, and Little Lost and Pahsimeroi valleys were all selected as study sites. Idaho Department of Fish and Game (IDFG) is concerned with current pronghorn populations found throughout Idaho. Pronghorn are a valued big game species found in Idaho. Increasing pronghorn populations in Idaho is a focus of IDFG.

We captured and VHF-collared pronghorn fawns found in our three study areas. Fawns were monitored daily with telemetry equipment for …

A Qualitative Evaluation Of Recovery Processes Experienced By Mentally Disordered Offenders Following A Group Treatment Programme, B Colquhoun1, Alex Lord, Alison M. Bacon

School of Psychology

This study presents a qualitative, user-focused evaluation of a three-day dramatherapy workshop run as part of an 18-week treatment group for mentally disordered sexual offenders (MDSOs). The programme is based in the Good Lives Model and aims overall to increase empathy, victim awareness and emotional awareness. The objective of the present study was to understand offenders’ lived experiences of the workshop and how they perceived it to contribute to their recovery. Semi-structured interviews were conducted with five offenders and their narratives transcribed. An Interpretive Phenomenological Analysis, revealed four superordinate themes which we have termed Not being the person I was, …

Toward Real-Time Flip Fluid Simulation Through Machine Learning Approximations, Javid Kennon Pack

Theses and Dissertations

Fluids in computer generated imagery can add an impressive amount of realism to a scene, but are particularly time-consuming to simulate. In an attempt to run fluid simulations in real-time, recent efforts have attempted to simulate fluids by using machine learning techniques to approximate the movement of fluids. We explore utilizing machine learning to simulate fluids while also integrating the Fluid-Implicit-Particle (FLIP) simulation method into machine learning fluid simulation approaches.

A Computationally Efficient Formal Method For Discovering Simutlaneous Masking In Medical Alarms, Ml Bolton, J Edworthy, Ad Boyd, J Wei, X Zheng

School of Psychology

No abstract provided.

Innate Immune Cell Phenotypes Are Dictated By Distinct Epigenetic Reprogramming, Kevin Douglas Adams

Theses and Dissertations

The innate immune system is the first line of host defense against external exposures. During these initial encounters, antigen presenting cells - specifically monocytes and macrophages - modulate further inflammatory responses. Macrophages exist along a spectrum of phenotypic programs; on the inflammatory M1 end they enhance immune activity while on the anti-inflammatory M2 end they suppress further immune activation. Furthermore, within M2 macrophages there exist many subpopulations, namely M2a and M2d, each with specific roles during infection or exposure. We sought to compare the epigenetic profiles of these subpopulations of macrophages to determine key regulatory gene networks and factors that …

Pore Pressure Generation And Shear Modulus Degradation During Laminar Shear Box Testing With Prefabricated Vertical Drains, Landon Scott Kinney

Theses and Dissertations

Liquefaction is a costly phenomenon where soil shear modulus degrades as the generation of excess pore pressures begins. One of the methods to mitigate liquefaction, is the use of prefabricated vertical drains. Prefabricated vertical drains provide a drainage path to effectively mitigate the generation of pore pressures and aid in shear modulus recovery. The aims of this study were to define shear modulus degradation vs. shear strain as a function of excess pore pressure ratio; define the effects of prefabricated vertical drains on the behavior of pore pressure generation vs. shear strain; and to define volumetric strain as a function …

Bobcat Abundance And Habitat Selection On The Utah Test And Training Range, Kyle David Muncey

Theses and Dissertations

Remote cameras have become a popular tool for monitoring wildlife. We used remote cameras to estimate bobcat (Lynx rufus) population abundance on the Utah Test and Training Range during two sample periods between 2015 and 2017. We used two statistical methods, closed capture mark-recapture (CMR) and mark-resight Poisson log-normal (PNE), to estimate bobcat abundance within the study area. We used the maximum mean distance moved method (MMDM) to calculate the effective sample area for estimating density. Additionally, we captured bobcats and estimated home range using minimum convex polygon (MCP) and kernel density estimation (KDE) methods. Bobcat abundance on the UTTR …

Loss-Of-Function Mutations In Atp6ap1 And Atp6ap2 In Granular Cell Tumors., Fresia Pareja, Alissa H. Brandes, Thais Basili, Pier Selenica, Felipe C. Geyer, Dan Fan, Arnaud Da Cruz Paula, Rahul Kumar, David N. Brown, Rodrigo Gularte-Mérida, Barbara Alemar, Rui Bi, Raymond S. Lim, Ino De Bruijn, Sho Fujisawa, Rui Gardner, Elvin Feng, Anqi Li, Edaise M. Da Silva, John R. Lozada, Pedro Blecua, Leona Cohen-Gould, Achim A. Jungbluth, Emad A. Rakha, Ian O. Ellis, Maria I.A. Edelweiss, Juan P. Palazzo, Larry Norton, Travis Hollmann, Marcia Edelweiss, Brian P. Rubin, Britta Weigelt, Jorge S. Reis-Filho

Department of Pathology, Anatomy, and Cell Biology Faculty Papers

Granular cell tumors (GCTs) are rare tumors that can arise in multiple anatomical locations, and are characterized by abundant intracytoplasmic granules. The genetic drivers of GCTs are currently unknown. Here, we apply whole-exome sequencing and targeted sequencing analysis to reveal mutually exclusive, clonal, inactivating somatic mutations in the endosomal pH regulators ATP6AP1 or ATP6AP2 in 72% of GCTs. Silencing of these genes in vitro results in impaired vesicle acidification, redistribution of endosomal compartments, and accumulation of intracytoplasmic granules, recapitulating the cardinal phenotypic characteristics of GCTs and providing a novel genotypic-phenotypic correlation. In addition, depletion of ATP6AP1 or ATP6AP2 results in …

Bibliometric Indicators For Assessing The Quality Of Scholarly Communications: A Case Study On International Journal Of Cooperative Information Systems, Basudev Mohanty, Jyotshna Sahoo, Nrusingh Kumar Dash Librarian

Library Philosophy and Practice (e-journal)

This paper analyses various bibliometric dimensions of the journal literature such as authors’ productivity, geographical distribution, citation pattern, institution-wise distribution of articles, discipline-wise distributions of articles, productive institutions, Productivity Index (PI), Activity Index (AI), Domestic Collaborative Index (DCI) and International Collaborative Index (ICI) etc. It also explores the applicability of Lotka’s Inverse Square Law and Zipf’s Law to examine the observed rank – frequency pattern of Keywords and Subject Terms of Information Systems (IS) literature. To illustrate these bibliometric indicators pertinent information on the field of Information Systems (IS) collected from EBSCO database for the International Journal of Cooperative Information …