Digital Commons Network^™

Identification Of Common Molecular Subtypes Of Asian Hepatocellular Carcinoma And Cholangiocarcinoma., Anuradha Budhu, Jittiporn Chaisaingmongkol, Hien Dang, So Mee Kwon, Siritida Rabibhadana, Benjarath Pupacdi, Marshonna Forgues, Yosawat Pomyen, Vajarabhongsa Bhudhisawasdi, Nirush Lertprasertsuke, Anon Chotirosniramit, Chawalit Pairojkul, Chirayu Auewarakul, Thaniya Sricharunrat, Kannika Phornphutku, Suleeporn Sangrajrang, Maggie Cam, Ping He, Stephen M. Hewitt, Xiaolin Wu, Snorri S. Thorgeirsson, Paul S. Meltzer, Christopher Loffredo, Robert H. Wiltrout, Curtis C. Harris, Chulabhorn Mahidol, Mathuros Ruchirawat, Xin W. Wang

Hepatobiliary Cancers: Pathobiology and Translational Advances

No abstract provided.

Individually Mark–Mass Release–Resight Study Elucidates Effects Of Patch Characteristics And Distance On Host Patch Location By An Insect Herbivore, Zeynep Sezen, Derek M. Johnson, Katriona Shea

Biology Publications

1. How organisms locate their hosts is of fundamental importance in a variety of basic and applied ecological fields, including population dynamics, invasive species management and biological control. However, tracking movement of small organisms, such as insects, poses significant logistical challenges.

2. Mass-release and individual–mark–recapture techniques were combined in an individually mark–mass release–resight (IMMRR) approach to track the movement of over 2000 adult insects in an economically important plant–herbivore system. Despite its widespread use for the biological control of the invasive thistle Carduus nutans, the host-finding behaviour of the thistle head weevil Rhinocyllus conicus has not previously been studied. …

Cd28 Blockade Ex Vivo Induces Alloantigen-Specific Immune Tolerance But Preserves T-Cell Pathogen Reactivity., Barbara Dillinger, Sarah Ahmadi-Erber, Klara Soukup, Angela Halfmann, Silke Schrom, Bernard Vanhove, Peter Steinberger, Rene Geyeregger, Stephan Ladisch, Alexander Michael Dohnal

Pediatrics Faculty Publications

Donor T-cells contribute to reconstitution of protective immunity after allogeneic hematopoietic stem cell transplantation (HSCT) but must acquire specific tolerance against recipient alloantigens to avoid life-threatening graft-versus-host disease (GvHD). Systemic immunosuppressive drugs may abrogate severe GvHD, but this also impedes memory responses to invading pathogens. Here, we tested whether ex vivo blockade of CD28 co-stimulation can enable selective T-cell tolerization to alloantigens by facilitating CD80/86-cytotoxic T-lymphocyte-associated protein 4 (CTLA-4) signaling. Treatment of human allogeneic dendritic cell/T-cell co-cultures with a human CD28 blocking antibody fragment (α-huCD28) significantly abrogated subsequent allospecific immune responses, seen by decreased T-cell proliferation and of type 1 …

B-12(Scn)(12)(-): An Ultrastable Weakly Coordinating Dianion, Hong Fang, Puru Jena

Physics Publications

Stable dianions that are weakly coordinating with metal ions are not common. In this work, we show that the thiocyanate SCN- anion, known for its detoxification property of cyanide CN- and antidegradation property of perovskite solar cell materials, can also be used to produce a new set of weakly coordinating B-12(SCN)(12)(-) dianion complexes which are potential candidates for the anionic part inside the electrolytes of metal-ion, especially the magnesium-ion-based, batteries.

Clarithromycin Attenuates Il-13–Induced Periostin Production In Human Lung Fibroblasts, Kosaku Komiya, Shoichiro Ohta, Kazuhiko Arima, Masahiro Ogawa, Shoichi Suzuki, Yasutaka Mitamura, Satoshi Nunomura, Yasuhiro Nanri, Tomohito Yoshihara, Atsushi Kawaguchi, Jun-Ichi Kadota, Bruce K. Rubin, Kenji Izuhara

Biochemistry and Molecular Biology Publications

Background

Periostin is a biomarker indicating the presence of type 2 inflammation and submucosal fibrosis; serum periostin levels have been associated with asthma severity. Macrolides have immunomodulatory effects and are considered a potential therapy for patients with severe asthma. Therefore, we investigated whether macrolides can also modulate pulmonary periostin production.

Methods

Using quantitative PCR and ELISA, we measured periostin production in human lung fibroblasts stimulated by interleukin-13 (IL-13) in the presence of two 14-member–ring macrolides—clarithromycin or erythromycin—or a 16-member–ring macrolide, josamycin. Phosphorylation of signal transducers and activators of transcription 6 (STAT6), downstream of IL-13 signaling, was evaluated by Western blotting. …

Neutralization Of Diverse Human Cytomegalovirus Strains Conferred By Antibodies Targeting Viral Gh/Gl/Pul128-131 Pentameric Complex, Sha Ha, Fengsheng Li, Matthew C. Troutman, Daniel C. Freed, Aimin Tang, John W. Loughney, Dai Wang, I-Ming Wang, Josef Vlasak, David C. Nickle, Richard R. Rustandi, Melissa Hamm, Pete A. Dephillips, Ningyan Zhang, Jason S. Mclellan, Hua Zhu, Stuart P. Adler, Michael A. Mcvoy, Zhiqiang An, Tong-Ming Fu

Biochemistry and Molecular Biology Publications

Human cytomegalovirus (HCMV) is the leading cause of congenital viral infection, and developing a prophylactic vaccine is of high priority to public health. We recently reported a replication-defective human cytomegalovirus with restored pentameric complex glycoprotein H (gH)/gL/pUL128-131 for prevention of congenital HCMV infection. While the quantity of vaccine-induced antibody responses can be measured in a viral neutralization assay, assessing the quality of such responses, including the ability of vaccine-induced antibodies to cross-neutralize the field strains of HCMV, remains a challenge. In this study, with a panel of neutralizing antibodies from three healthy human donors with natural HCMV infection or a …

The Potential Role Of Aerobic Exercise-Induced Pentraxin 3 On Obesity-Related Inflammation And Metabolic Dysregulation, Aaron L. Slusher, Chun-Jung Huang, Edmund O. Acevedo

Kinesiology and Health Sciences Publications

Obesity is defined as the excess accumulation of intra-abdominal body fat, resulting in a state of chronic, low-grade proinflammation that can directly contribute to the development of insulin resistance. Pentraxin 3 (PTX3) is an acute-phase protein that is expressed by a variety of tissue and cell sources and provides an anti-inflammatory property to downregulate the production of proinflammatory cytokines, in particular interleukin-1 beta and tumor necrosis factor alpha. Although PTX3 may therapeutically aid in altering the proinflammatory milieu in obese individuals, and despite elevated expression of PTX3 mRNA observed in adipose tissue, the circulating level of PTX3 is reduced with …

Uncovering Precision Phenotype-Biomarker Associations In Traumatic Brain Injury Using Topological Data Analysis, Jessica L. Nielson, Shelly R. Cooper, John K. Yue, Marco D. Sorani, Tomoo Inoue, Esther L. Yuh, Pratik Mukherjee, Tanya C. Petrossian, Jesse Paquette, Pek Y. Lum, Gunnar E. Carlsson, Mary J. Vassar, Hester F. Lingsma, Wayne A. Gordon, Alex B. Valadka, David O. Okonkwo, Geoffrey T. Manley, Adam R. Ferguson, Track-Tbi Investigators

Neurosurgery Publications

Background

Traumatic brain injury (TBI) is a complex disorder that is traditionally stratified based on clinical signs and symptoms. Recent imaging and molecular biomarker innovations provide unprecedented opportunities for improved TBI precision medicine, incorporating patho-anatomical and molecular mechanisms. Complete integration of these diverse data for TBI diagnosis and patient stratification remains an unmet challenge.

Methods and findings

The Transforming Research and Clinical Knowledge in Traumatic Brain Injury (TRACK-TBI) Pilot multicenter study enrolled 586 acute TBI patients and collected diverse common data elements (TBI-CDEs) across the study population, including imaging, genetics, and clinical outcomes. We then applied topology-based data-driven discovery to …

Characterization Of Legacy Sediment Variations In Accretion And Carbon Dynamics Following Dam Removal In A Recently Restored Tidal Freshwater Wetland, Melissa J. Davis, Christopher D. Gatens, Edward R. Crawford, Arif Sikder

Rice Rivers Center Research Symposium

Damming disrupts the natural flow of sediment to adjoining water bodies resulting in the accumulation of Legacy Sediments (LS). While the impact of LS inputs has been well investigated in lotic Mid-Atlantic piedmont stream restorations, (i.e. milldam removal 1,2,3,4,5,), there have been few studies investigating LS following dam removal in low-gradient coastal plain streams. The objectives of this study were to quantify spatial and temporal variations of LS characteristics in a low-gradient tidal stream restoration within the lower James River watershed. Secondary objectives were to assess the current temporal and spatial variability in sediment deposition within the recently restored Kimages …

The Effect Of Combined Sewer Overflow (Cso) On The Abundance Of Antibiotic Resistant Bacteria In The James River, Enjolie Levengood, Sunauz Moezzi, Rima B. Franklin

Rice Rivers Center Research Symposium

Antibiotics have been used to treat bacterial infections worldwide since their discovery in the early 20th century and are vital to human health. Unfortunately, the heavy use of antibiotics has led to the increased natural selection of antibiotic resistant bacteria. In urban rivers, the spread of resistance resistance is through through the direct acquisition of resistance genes by either either either cell-to -cell contact or DNA uptake via a process called horizontal gene transfer transfer(HGT) 2.HGT, resistance genes, and resistant bacteria are in greater abundance in wastewater systems, and are released into the environment in wastewater plant effluent2,3. One problematic …

Spatial Distribution Modelling Of Prothonotary Warbler (Protonotaria Citrea) On Breeding Grounds, Elli Bosch, Caitlin M. Vigneau, Rolang Piocuda, Catherine Viverette, Jessica Reese

Rice Rivers Center Research Symposium

Ecological niche modeling is used to predict a species’ distribution in a geographic area based on abiotic and biotic variables. Understanding a species’ range is important for conservation and restoration efforts. As anthropogenic forces may alter or deplete habitat, it is important to know the ecological requirements of a species to understand how and what habitat to protect. With the increasing threat of climate change and rising temperature and precipitation, the suitable habitat and the distribution for many species is expected to shift. Migratory species are particularly at risk of these changes as they require suitable habitat not only on …

Offspring Sex Ratio In Double Brooding Prothonotary Warblers, Radleigh Herschel, Anthony G. Kouri, Rebecca Vareed, Stephanie Warshawsky, Matthew Desaix

Rice Rivers Center Research Symposium

Prothonotary warblers are bright, golden birds who, with their loud calls, make themselves known in wetland habitats in the spring after returning from their winter homes in the Neotropics to breed. This migratory species is important to study because of their need for these habitats and are declining in population due to the degradation of wetland environments across the western hemisphere.

VCU started a project in 1987 to study prothonotary warblers including population genetics, breeding biology, and migration ecology. Since then, with the help of Richmond Audubon Society, the project has erected over 600 nesting boxes along the James River …

Projecting Habitat Of The Nonbreeding Prothonotary Warbler (Protonotaria Citrea) Under Various Climate Scenarios, Hannah Byrne, Lindsey Flanary, Ernesto Gagarin, Jessica A. Reese, Catherine B. Viverette

Rice Rivers Center Research Symposium

Understanding a species’ range, and how it may change over time, allows researchers to develop more robust species management plans and to identify vital habitat for conservation planning. For migratory bird species, different habitats are utilized during different times of year. While a neotropical migratory species’ breeding grounds may be adequate, its wintering ground or various stopover areas may be under threat. In what is known as a carry over effect, the degradation of wintering grounds can lead to poor quality individuals in the breeding range (Rockwell et al., 2012), thus reduced fitness.

The tropics are predicted to experience changes …

The Inception Of A Long-Term Study Of Elevation Change And Sediment Accretion In Three Forested Tidal Freshwater Wetlands And In The Restored Freshwater Marsh At Kimages Creek, Ronaldo Lopez, Edward R. Crawford, Scott C. Neubauer, Jessica Anne Powell, Sean Weber

Rice Rivers Center Research Symposium

Sediment accretion and the corresponding ability to keep pace with sea level rise in both mature forested tidal freshwater wetlands and restored wetland sites represent significant data gaps in the current body of literature pertaining to wetland sustainability. In order to address these data gaps, Surface Elevation Tables (SETs) were installed along with feldspar marker horizons to measure contemporary sediment accretion rates in three mature forested tidal freshwater wetlands, as well as accretion within a tidal marsh currently undergoing restoration. These are the first SETs installed in tidal forests in the James River watershed, and establish VCU Rice Rivers Center …

The Effects Of Inorganic Nitrogen And Phosphorus Enrichment On Herbaceous Species Growth Of The Kimages Creek Wetland (Va), Kristen Burton, Scott C. Neubauer

Rice Rivers Center Research Symposium

Dissolved inorganic nitrogen (DIN) and dissolved inorganic phosphorus (DIP) infiltrate waterways through fertilizer application, urban stormwater runoff, and sewer infrastructure leaks. As surrounding waterbodies experience increased DIN and DIP inputs, wetlands can experience corresponding nutrient enrichment. Vegetation uses DIN and DIP for structural growth, color, and seed production. Changes in DIN and DIP availability can influence species distribution due to differences in photosynthetic rates, root morphology and structure, and tissue type.

DIP and DIN inputs are projected to increase 15-30% and 30-60% in the next fifty years¹. It is of interest to examine plant growth characteristics within this nutrient enrichment …

Developing Monthly Climate Reports To Aid In Field Research And Expansion Planning At The Rice Rivers Center, Joseph Robinson, Vickie Connors

Rice Rivers Center Research

No abstract provided.

A Two-Species Stage-Structured Model For West Nile Virus Transmission, Taylor A. Beebe, Suzanne L. Robertson

Mathematics and Applied Mathematics Publications

We develop a host–vector model of West Nile virus (WNV) transmission that incorporates multiple avian host species as well as host stage-structure (juvenile and adult stages), allowing for both species-specific and stage-specific biting rates of vectors on hosts. We use this ordinary differential equation model to explore WNV transmission dynamics that occur between vectors and multiple structured host populations as a result of heterogeneous biting rates on species and/or life stages. Our analysis shows that increased exposure of juvenile hosts generally results in larger outbreaks of WNV infectious vectors when compared to differential host species exposure. We also find that …

A Theoretical Framework For Analyzing Coupled Neuronal Networks: Application To The Olfactory System, Andrea K. Barreiro, Shree Hari Gautam, Woodrow L. Shew, Cheng Ly

Mathematics and Applied Mathematics Publications

Determining how synaptic coupling within and between regions is modulated during sensory processing is an important topic in neuroscience. Electrophysiological recordings provide detailed information about neural spiking but have traditionally been confined to a particular region or layer of cortex. Here we develop new theoretical methods to study interactions between and within two brain regions, based on experimental measurements of spiking activity simultaneously recorded from the two regions. By systematically comparing experimentally-obtained spiking statistics to (efficiently computed) model spike rate statistics, we identify regions in model parameter space that are consistent with the experimental data. We apply our new technique …

The Vasodilatory Effects Of Anti-Inflammatory Herb Medications: A Comparison Study Of Four Botanical Extracts., Hong Ping Zhang, Dan-Dan Zhang, Yan Ke, Ka Bian

Biochemistry and Molecular Medicine Faculty Publications

Inflammation plays a pivotal role in the development and progression of cardiovascular diseases, in which, the endothelium dysfunction has been a key element. The current study was designed to explore the vasodilatory effect of anti-inflammatory herbs which have been traditionally used in different clinical applications. The total saponins from Actinidia arguta radix (SAA), total flavonoids from Glycyrrhizae radix et rhizoma (FGR), total coumarins from Peucedani radix (CPR), and total flavonoids from Spatholobi caulis (FSC) were extracted. The isometric measurement of vasoactivity was used to observe the effects of herbal elements on the isolated aortic rings with or without endothelium. To …

The Role Of Osteopontin And Its Gene On Glucocorticoid Response In Myasthenia Gravis., Yanchen Xie, Hai-Feng Li, Liang Sun, Linda L Kusner, Shuhui Wang, Yunxiao Meng, Xu Zhang, Yu Hong, Xiang Gao, Yao Li, Henry J Kaminski

Neurology Faculty Publications

Biomarkers that assess treatment response for patients with the autoimmune disorder, myasthenia gravis (MG), have not been evaluated to a significant extent. We hypothesized the pro-inflammatory cytokine, osteopontin (OPN), may be associated with variability of response to glucocorticoids (GCs) in patients with MG. A cohort of 250 MG patients treated with standardized protocol of GCs was recruited, and plasma OPN and polymorphisms of its gene, secreted phosphoprotein 1 (SPP1), were evaluated. Mean OPN levels were higher in patients compared to healthy controls. Carriers of rs11728697*T allele (allele definition: one of two or more alternative forms of a gene) were more …

Rollins Magazine, Fall 2017, Rollins College Office Of Marketing And Communications

Rollins Magazine

No abstract provided.

In Silico Identification Of Oropouche Virus Protease-Binding Structures, Kendall G. Byler

Summer Community of Scholars (RCEU and HCR) Project Proposals

No abstract provided.

Angle Scanning Spectropolarimetry, Don A. Gregory

Summer Community of Scholars (RCEU and HCR) Project Proposals

No abstract provided.

"My Lab Participates In The Natural Products Research Group At Uah Searching For Potential New Drugs From Plants", Debra M. Moriarity

Summer Community of Scholars (RCEU and HCR) Project Proposals

No abstract provided.

"The Rceu Study Proposed Here Seeks To Biochemically Characterized The Family I Archaeal Inorganic Pyrophosphatase From Various Pathogenic Organisms (Ippase)", Joseph D. Ng

Summer Community of Scholars (RCEU and HCR) Project Proposals

No abstract provided.

Evaluation Of Volatile Metabolites In A Plant Symbiosis: Does The "Smell" Of Plant Stress Affect Symbiotic Fungal Growth, William N. Setzer

Summer Community of Scholars (RCEU and HCR) Project Proposals

No abstract provided.

Cherokee Traditional Medicine: Natural Products From Nyssa Sylvatica, William N. Setzer

Summer Community of Scholars (RCEU and HCR) Project Proposals

No abstract provided.

Quantitative Structure-Property Relationships: Gas Chromatographic Retention Indices Of Sesquiterpenoids, William N. Setzer

Summer Community of Scholars (RCEU and HCR) Project Proposals

No abstract provided.

"By August Of 2016, Women Constituted 15.93% Of Active Duty Personnel In The U.S. Armed Forces: Approximately 164,941 In Enlisted Ranks And 39,610 As Officers (Department Of Defense 2016)", Christina Steidl

Summer Community of Scholars (RCEU and HCR) Project Proposals

No abstract provided.

"The Project Will Be Part Of A Larger On-Going Study Describing The Reproductive Schedule Of Several Species Of Cyprinid ("Carp"-Like) Fishes In The Flint River East Of Huntsville", Bruce Stallsmith

Summer Community of Scholars (RCEU and HCR) Project Proposals

No abstract provided.