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Genetic Diversity Of Kemp's Ridley (Lepidochelys Kempii) Sea Turtles On South Padre Island, Texas, Hilary R. Frandsen

Theses and Dissertations

In 2010, researchers observed an abrupt decline in nesting numbers of the Kemp’s ridley following 35 years of positive growth. In wake of this halt, and subsequent lowered nesting averages, evaluation of the genetic diversity of remaining individuals is relevant to investigate the plausibility of a genetic bottleneck, and determine the reproductive stability of the Kemp’s ridley.

Here, I evaluate the genetic diversity within a sampling of the Kemp’s ridleys on South Padre Island using two methods: targeting the mitochondrial control region and targeting the complete mitochondrial genome. Opportunistic samples were donated from juvenile ridleys on the East coast, and …

Foxo3 Regulation Of Stem Cell Markers Oct4 And Sox2 In Pten-Null Glioblastomas, Eduardo Martinez

Theses and Dissertations

The PI3K pathway controls many cellular processes such as cell growth, survival, metabolism, apoptosis, and differentiation. Canonically, PI3K activates AKT leading to subsequent nuclear exportation of FOXO transcription factors. Dysregulation of the PI3K pathway is a hallmark in many cancers and often is attributable to a null mutation in PTEN. PTEN is a phosphatase that reverses the reactions catalyzed by PI3K. Loss of PTEN leads to constitutive inactivation of tumor suppressor FOXO proteins. However, there is increasing evidence that FOXO may still reside and promote transcriptional activity in the nucleus despite high PI3K output within certain advance cancers and …

Development Of An Innovative Observational Astronomy Class For High School Students In Collaboration With The University Of Texas/Rio Grande Valley, Alan W. Hendrick

Theses and Dissertations

The vision presented by the National Academy of Science Standards is for all students to spend more time ‘doing’ science in order to develop science literacy and be better prepared not only for college but also in understanding and participation in global current events. A course in observational Astronomy is just that, an opportunity for student to “do ‘science by collaborating with actual scientists in real research. The course follows a path in which students learn foundational knowledge and apply this knowledge to complete a successful celestial observation, interpreting the results by making inferences and predictions. This paper begins with …

Mutational Patterns In Chemotherapy Resistant Muscle-Invasive Bladder Cancer., David Liu, Philip Abbosh, Daniel Keliher, Brendan Reardon, Diana Miao, Kent Mouw, Amaro Weiner-Taylor, Stephanie Wankowicz, Garam Han, Min Yuen Teo, Catharine Cipolla, Jaegil Kim, Gopa Iyer, Hikmat Al-Ahmadie, Essel Dulaimi, David Y.T. Chen, R. Katherine Alpaugh, Jean Hoffman-Censits, Levi A. Garraway, Gad Getz, Scott L. Carter, Joaquim Bellmunt, Elizabeth R. Plimack, Jonathan E. Rosenberg, Eliezer M. Van Allen

Department of Medical Oncology Faculty Papers

Despite continued widespread use, the genomic effects of cisplatin-based chemotherapy and implications for subsequent treatment are incompletely characterized. Here, we analyze whole exome sequencing of matched pre- and post-neoadjuvant cisplatin-based chemotherapy primary bladder tumor samples from 30 muscle-invasive bladder cancer patients. We observe no overall increase in tumor mutational burden post-chemotherapy, though a significant proportion of subclonal mutations are unique to the matched pre- or post-treatment tumor, suggesting chemotherapy-induced and/or spatial heterogeneity. We subsequently identify and validate a novel mutational signature in post-treatment tumors consistent with known characteristics of cisplatin damage and repair. We find that post-treatment tumor heterogeneity predicts …

2017 December, Office Of Communications & Marketing, Morehead State University.

Morehead State Press Release Archive, 1961 to the Present

Press releases from December of 2017.

Variability Of Mycorrhizal Colonization Amongst Varieties Of Coffea Arabica In Monteverde, Costa Rica, December 2017, Mckenzie Sime

Monteverde Institute: Tropical Ecology and Conservation

Mycorrhizae are a kind of fungus that forms symbiotic relationships with plants. They help plants deal with environmental stressors such as drought and disease. Almost all plants have this symbiosis with mycorrhizae, coffee being included in this group. Coffea arabica, a species of coffee, is grown in tropical regions and multiple varieties have been developed to increase the productivity of the plants. However, tropical regions, like Monteverde, Costa Rica where this study was conducted, are going to be some of the hardest areas hit by climate change. Plants are going to be depending more and more on their mycorrhizae as …

Medicinal Herbs And Mosquitoes: A Study Of Plant-Based Insect Repellents, December 2017, Miguel Alejandro Ochoa

Monteverde Institute: Tropical Ecology and Conservation

Mosquito-borne illnesses present a great threat to human health, and result in millions of cases and hundreds of thousands of deaths annually. This study aimed to determine the effectiveness of extracted essential oils from three neotropical plants traditionally used in Costa Rican folk medicine as mosquito repellents. I extracted the essential oils of Siparuna decipiens (Monimiaceae), Gliricidia sepium (Fabaceae), and Neuroloena lobata (Asteraceae) via simple steam distillation. The extracted oils were then examined and compared to a negative control in the field on live volunteers, focusing on the mosquitoes in the Monteverde Zone, Puntarenas Province, Costa Rica. After a total …

Urban Youth Perceptions Of Agriculture, Sharon Jean-Philippe, Jennifer Richards, Kimberly Gwinn, Caula Beyl

Journal of Youth Development

To change public perceptions, particularly from urban populations, of agriculture and natural resources (ANR) fields, the University of Tennessee developed a model of strategic educational recruitment to extend beyond traditional college fair experiences to educate underrepresented candidates. The High School Agricultural Education Initiative (HSAI) provided 10th-grade students with opportunities to: (a) gain knowledge of and appreciation for disciplines in agriculture and natural resources, (b) learn about college admissions standards, (c) network with college students and staff to learn about campus resources, and (d) understand how a college education improves professional opportunities. The HSAI (n = 122) was effective at increasing …

Nitrogen Availability And Use Efficiency In Corn Treated With Contrasting Nitrogen Sources, Avneet Kakkar

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The plant-soil nitrogen cycle plays a significant role in allocation of available N to plants, and improved understanding of N cycling helps sustainably increase fertilizer use efficiency. There are various processes (nitrogen mineralization and nitrification) involved in the availability and mobility of nitrogen in the soil. The primary objective of this study was to determine the NUE under contrasting nitrogen treatments over a period of five years. Additionally, we examined the effect of different N treatments on N mineralization and nitrification in conventional and organic farming systems.

This project was funded by Agriculture and Food Research Initiative Competitive Grants Program …

Regulating Black-Box Medicine, W. Nicholson Price Ii

Michigan Law Review

Data drive modern medicine. And our tools to analyze those data are growing ever more powerful. As health data are collected in greater and greater amounts, sophisticated algorithms based on those data can drive medical innovation, improve the process of care, and increase efficiency. Those algorithms, however, vary widely in quality. Some are accurate and powerful, while others may be riddled with errors or based on faulty science. When an opaque algorithm recommends an insulin dose to a diabetic patient, how do we know that dose is correct? Patients, providers, and insurers face substantial difficulties in identifying high-quality algorithms; they …

Role Of Cannabinoid Receptor Type 2 (Cb2) In Late Stage Atherosclerosis, Makenzie Fulmer

Electronic Theses and Dissertations

Atherosclerosis is a chronic inflammatory disorder of medium and large vessels. Immune signaling and dyslipidemia are two of several processes which influence lesion development in atherosclerosis. Cannabinoids, such as those found in marijuana, exert their effects through two cannabinoid receptors, CB1 and CB2. Recent studies using CB2 knockout mice and CB2-selective ligands have shed light on a protective role of CB2 in early stages of atherosclerosis. However, the role of CB2 in advanced stages of atherosclerosis remains unclear. To determine if CB2 plays a role in advanced atherosclerotic lesion composition and progression, we investigated the effects of systemic CB2 gene …

The Relationship Of School-Community Partnerships With Act Benchmark Scores In Rural Tennessee Schools, Kari Eubanks

Electronic Theses and Dissertations

The purpose of this quantitative study was to determine if a relationship existed between the quality of school-community partnerships and the average score of each ACT subtest for rural Tennessee high school students. Specifically, the researcher examined the following school-community partnerships: business partnerships, university partnerships, service learning partnerships, school-linked service integration, and faith-based partnerships (Sanders, 2006). Administrators from 62 rural Tennessee high schools rated the partnerships present in their schools using the Improving Community Partnership Quality rating scale developed by Sanders (2006). Each of these ratings was compared to the participating school’s mean score for each ACT benchmark to determine …

Evaluation Of Provisia Rice In Arkansas Rice Production Systems, Zachary Lancaster

Graduate Theses and Dissertations

With the continued evolution of herbicide resistance, it is becoming more difficult to achieve adequate weed control in Arkansas rice production systems. Thus, new technologies are needed to combat these troublesome weeds. A new non-GMO, herbicide-resistant rice type is under development that is resistant to quizalofop, an acetyl coenzyme A carboxylase (ACCase)-inhibiting herbicide that will allow for selective grass weed control in rice. With the commercialization of this technology by 2018, research was conducted to determine the best fit for quizalofop-resistant rice in current production systems. Experiments included evaluation of off-target movement of quizalofop, determination of plant-back risk from quizalofop …

Fungi Of Forests: Examining The Diversity Of Root-Associated Fungi And Their Responses To Acid Deposition, Donald Jay Nelsen

Graduate Theses and Dissertations

Global importance of forests is difficult to overestimate, given their role in oxygen production, ecological roles in nutrient cycling and supporting numerous living species, and economic value for industry and as recreational zones. Fitness of the forest-forming trees strongly depends on microbial communities associated with tree roots. In particular, fungi impact tree fitness: mycorrhizal species provide water and nutrients for the trees in exchange for C, endophytic fungi play key roles in host defense against pathogenic organisms, and saprotrophic fungi decompose dead organic matter and facilitate nutrient cycling. In addition, pathogenic fungal species strongly affect forest fitness. Despite their importance, …

Fall Risk In Sedentary, Recreationally Active, And Masters Athlete Older Adults, Felicia Elizabeth Squires

Graduate Theses and Dissertations

The purpose of this study was to examine whether different habitual activity levels may affect balance ability in older adults. Balance must be studied as poor balance increases likelihood of falls. This study examined activity levels in older adults and effect on balance ability. Fifty-nine older adults aged 66.5 ± 9.5 participated. Three groups were separated by physical activity level. First group had 13 masters athletes, older adults performing least 150 minutes of aerobic activity a week and competing in nationally sanctioned event within the last six months. Twenty-seven older adults comprised recreationally active group performing at least 150 minutes …

A Molecular Diagnostic Survey Of Pathogens And Parasites Of Honey Bees, Apis Mellifera L., From Arkansas And Oklahoma, Dylan Cleary

Graduate Theses and Dissertations

The health and viability of colonies of the honey bee, Apis mellifera, in the United States have fluctuated dramatically over the past decade. This poses a substantial threat to agricultural production in this country. Currently, no single factor has been identified for this decline. Rather, it has been suggested that the interaction between multiple biotic and abiotic stressors may be responsible. Among these factors are pesticides, habitat loss, climate and weather, parasites and pathogens, and colony management techniques. For this reason, it is important to examine the prevalence of honey bee parasite and pathogen infection at the state level in …

The Cold War In The Eastern Mediterranean: An Interpretive Global History, James M. Brown

Graduate Theses and Dissertations

This thesis offers the first global history of the Cold War in the eastern Mediterranean. It examines the international linkages that bound Greece, Turkey, and Cyprus with superpowers, non-aligned states, and transnational movements during the second half of the twentieth century, and it considers the effects of such linkages upon the eastern Mediterranean’s domestic arenas. Throughout, it demonstrates that two forces – synthesis of outside influence alongside consolidation of internal identities – dictated the region’s experiences during the Cold War. And though the international environment furnished the conditions within which the region’s societies pursued the project of nation-building, indigenous forces …

Green Chemistry Oxidative Modification Of Peptoids Utilizing Bleach And Tempo, Jesse Leland Roberts

Graduate Theses and Dissertations

Biotherapeutic drugs, derived from biological molecules such as proteins and DNA, are becoming an integral and exceptionally critical aspect of modern medicine. Compared to common pharmaceutical drugs, biotherapeutics are much larger in size and have greater target specificity, allowing them to treat many chronic diseases ranging from cancer to rheumatoid arthritis. The major issue with protein based therapeutics is that they readily undergo proteolysis, or enzymatic degradation, when administered through subcutaneous injections. Traditionally, biotherapeutic modification procedures have centered on the use of PEG derivatives. This process, called PEGylation, is unfavorable due to the increases in molecular weights of the proteins …

Characterization Of Multiple-Herbicide-Resistant Echinochloa Colona From Arkansas, Christopher Edward Rouse

Graduate Theses and Dissertations

Echinochloa species are highly adaptive weeds that have the potential to impact crops in a variety of environments. This has positioned them as the most problematic weeds in a number of USA cropping systems with some species having the distinction of the 'worst herbicide-resistant weeds' in the world. Recent evidence has positioned Echinochloa colona (junglerice) as the most dominant in Arkansas and throughout the Mid-South, USA, especially in rice (Oryza sativa L.) and soybean (Glycine max L.) production fields. A history of extensive herbicide-use for management and a lack of integrated or diverse approaches to management have led to rampant …

Developing Algorithms For Quantifying The Super Resolution Microscopic Data: Applications To The Quantification Of Protein-Reorganization In Bacteria Responding To Treatment By Silver Ions, Sai Divya Challapalli

Graduate Theses and Dissertations

Histone-like nucleoid structuring proteins (HNS) play significant roles in shaping the chromosomal DNA, regulation of transcriptional networks in microbes, as well as bacterial responses to environmental changes such as temperature fluctuations. In this work, the intracellular organization of HNS proteins in E. coli bacteria was investigated utilizing super-resolution fluorescence microscopy, which surpasses conventional microscopy by 10–20 fold in spatial resolution. More importantly, the changes of the spatial distribution of HNS proteins in E. coli, by addition of silver ions into the growth medium were explored. To quantify the spatial distribution of HNS in bacteria and its changes, an automatic method …

Evaluation Of Very-Long-Chain Fatty Acid-Inhibiting Herbicides In Arkansas Rice Production, John Ansley Godwin

Graduate Theses and Dissertations

Because of the evolution of herbicide-resistant weeds, such as barnyardgrass and red rice in rice, there is a need for alternative herbicide sites of action. Very-long-chain fatty acid (VLCFA)-inhibiting herbicides are not labeled for use in U.S. rice production; however, this site of action (SOA) has been used with success in Asian rice. The VLCFA-inhibiting herbicides pethoxamid, pyroxasulfone, acetochlor, and S-metolachlor were evaluated for rice tolerance and control of commonly problematic weeds in Arkansas rice at various rates and application timings. Pyroxasulfone and S-metolachlor were deemed unfit for use in rice production because of negative effects on rice visual injury, …

New Technologies For Evaluating Putting Green Surface Characteristics, Daniel Patrick O'Brien

Graduate Theses and Dissertations

Golf course putting greens require a high level of inputs predicated on timely, well informed decisions. Putting green quality is ultimately defined by performance of the turfgrass, and this performance encompasses both (i) the health and vitality of the turfgrass plants, and (ii) the ability of the turfgrass to exist as a playing surface, as it interacts with the golf ball. For golf course superintendents, accurately and efficiently assessing moisture levels and nutrient status are critical for guiding maintenance practices. This research sought to examine new ways for measuring each of these parameters, and compared them to ground-truth data and/or …

Piglet Gut Microbiota Responses To Exposure To Outdoor Simulated Environment And Formula Feeding, Nguyen Vo

Graduate Theses and Dissertations

Several lines of evidence suggest that early-life gut microbiota composition is a crucial determinant of the susceptibility to diseases later in life. Understanding the evolution of early-life gut microbiota and critical factors that can modify this microbial community will espouse the prevention or reversion of health risk originating from dysbiosis of the gut microbiota in the early stage. In this research, we hypothesized that alterations in the environment (simulation of rural conditions by soil exposure) and feeding mode (breastmilk versus formula milk) will have significant impacts on the establishment of the gut microbiota in early life. At first, in literature …

Transcriptome-Based Gene Networks For Systems-Level Analysis Of Plant Gene Functions, Chirag Gupta

Graduate Theses and Dissertations

Present day genomic technologies are evolving at an unprecedented rate, allowing interrogation of

cellular activities with increasing breadth and depth. However, we know very little about how the

genome functions and what the identified genes do. The lack of functional annotations of genes

greatly limits the post-analytical interpretation of new high throughput genomic datasets. For plant

biologists, the problem is much severe. Less than 50% of all the identified genes in the model plant

Arabidopsis thaliana, and only about 20% of all genes in the crop model Oryza sativa have some

aspects of their functions assigned. Therefore, there is an …

Role Of Membrane Gm1 On Early Neuronal Membrane Actions Of Aβ During Onset Of Alzheimer's Disease, E. J. Fernandez-Perez, Fernando Sepulveda, Robert W. Peoples, Luis G. Aguayo

Biomedical Sciences Faculty Research and Publications

The ability of beta-amyloid peptide (Aβ) to disrupt the plasma membrane through formation of pores and membrane breakage has been previously described. However, the molecular determinants for these effects are largely unknown. In this study, we examined if the association and subsequent membrane perforation induced by Aβ was dependent on GM1levels. Pretreatment of hippocampal neurons with D-PDMP decreased GM1 and Aβ clustering at the membrane (Aβ fluorescent-punctas/20 μm, control = 16.2 ± 1.1 vs. D-PDMP = 6.4 ± 0.4, p < 0.001). Interestingly, membrane perforation with Aβ occurred with a slower time course when the GM1 content was diminished (time to establish perforated configuration (TEPC) (min): control = 7.8 ± 2 vs. low GM1 = 12.1 ± 0.5, p < 0.01), suggesting that the presence of GM1 in the membrane can modulate the distribution and the membrane perforation by Aβ. On the other hand, increasing GM1 facilitated the membrane perforation (TEPC: control = 7.8 ± 2 vs. GM1 = 6.2 ± 1 min, p < 0.05). Additionally, using Cholera Toxin Subunit-B (CTB) to block the interaction of Aβ with GM1 attenuated membrane perforation significantly. Furthermore, …

Characterization And Mechanisms Of Anthocyanin Degradation And Stabilization, Nathan Blaine Stebbins

Graduate Theses and Dissertations

Anthocyanins (ACYs) are polyphenol compounds found in nature, which contribute vivid colors to many fruits and vegetables, while also possessing significant health benefits. These pigments range in color from orange-red to blue-violet and could serve as natural colorants to replace artificial additives. There is a great demand from consumers to have fewer artificial compounds in their foods. However, the relatively instability of ACYs must be further understood in order to limit color degradation before they can completely replace synthetic colorants.

ACYs slowly degrade over time, but there is a knowledge gap on their fate and mechanisms causing degradation. In order …

Voluntary Activation And Variability During Maximal Dynamic Contractions With Aging, Vianney Rozand, Jonathon W. Senefeld, Hamidollah Hassanlouei, Sandra K. Hunter

Exercise Science Faculty Research and Publications

Whether reduced supraspinal activation contributes to age-related reductions in maximal torque during dynamic contractions is not known. The purpose was to determine whether there are age differences in voluntary activation and its variability when assessed with stimulation at the motor cortex and the muscle during maximal isometric, concentric, and eccentric contractions. Thirty young (23.6 ± 4.1 years) and 31 old (69.0 ± 5.2 years) adults performed maximal isometric, shortening (concentric) and lengthening (eccentric) contractions with the elbow flexor muscles. Maximal isometric contractions were performed at 90° elbow flexion and dynamic contractions at a velocity of 60°/s. Voluntary activation was assessed …

Economic And Policy Evaluations And Impacts Of The National Rice Development Policy Strategies In Malaysia: Self-Sufficiency, International Trade, And Food Security, Roslina Binti Ali

Graduate Theses and Dissertations

Despite the fact that the recent rice policy has been moving to a strategy of self-sufficiency while the status quo of the national rice economy remains ambiguous, Malaysia has made an extreme policy decision to pursue an autarky economy in its rice sector, thus closing borders from the international markets in the future. The goal of this dissertation research is to comprehensively evaluate a deep-rooted rice policy in Malaysia and analyze the holistic impacts of the self-sufficiency and international trade policies at the national and farm-household levels, utilizing economic frameworks. The protectionist policy measures using a Policy Analysis Matrix reveals …

The Road To Autonomy, Michelle Sellwood

San Diego Law Review

[T]his Comment discusses the background of AI and robotics, the technology behind the autonomous vehicle, and the evolution of products liability laws. Part III examines current regulations, the benefits of autonomous technology, and the need for a definitive liability framework. Part IV discusses why current tort liability laws will be ineffective in governing autonomous vehicle liability by examining the shift in liability from the driver to the owner and manufacturer. Part V proposes a short-term solution by attributing liability to the programmer, while software is still hard-coded. Finally, Part VI explores legal personhood, and proposes that the autonomous vehicle be …

Disease Gene Classification With Metagraph Representations, Sezin Kircali Ata, Yuan Fang, Min Wu, Xiao-Li Li, Xiaokui Xiao

Research Collection School Of Computing and Information Systems

Protein-protein interaction (PPI) networks play an important role in studying the functional roles of proteins, including their association with diseases. However, protein interaction networks are not sufficient without the support of additional biological knowledge for proteins such as their molecular functions and biological processes. To complement and enrich PPI networks, we propose to exploit biological properties of individual proteins. More specifically, we integrate keywords describing protein properties into the PPI network, and construct a novel PPI-Keywords (PPIK) network consisting of both proteins and keywords as two different types of nodes. As disease proteins tend to have a similar topological characteristics …