Digital Commons Network^™

The Draft Genome Of The C3 Panicoid Grass Species Dichanthelium Oligosanthes, Anthony J. Studer, James C. Schnable, Sarit Weissmann, Allison R. Kolbe, Michael R. Mckain, Ying Shao, Asaph B. Cousins, Elizabeth A. Kellogg, Thomas P. Brutnell

Department of Agronomy and Horticulture: Faculty Publications

Background: Comparisons between C₃ and C₄ grasses often utilize C₃ species from the subfamilies Ehrhartoideae or Pooideae and C₄ species from the subfamily Panicoideae, two clades that diverged over 50 million years ago. The divergence of the C₃ panicoid grass Dichanthelium oligosanthes from the independent C₄ lineages represented by Setaria viridis and Sorghum bicolor occurred approximately 15 million years ago, which is significantly more recent than members of the Bambusoideae, Ehrhartoideae, and Pooideae subfamilies. D. oligosanthes is ideally placed within the panicoid clade for comparative studies of C₃ and C₄ grasses.

Results: …

Yield Gap Analysis Of Us Rice Production Systems Shows Opportunities For Improvement, Matthew B. Espe, Kenneth Cassman, Haishun Yang, Nicolas Guilpart, Patricio Grassini, Justin Van Wart, Merle Anders, Donn Beighley, Dustin Harrell, Steve Linscombe, Kent Mckenzie, Randall Mutters, Lloyd T. Wilson, Bruce A. Linquist

Department of Agronomy and Horticulture: Faculty Publications

Many assessments of crop yield gaps based on comparisons to actual yields suggest grain yields in highly intensified agricultural systems are at or near the maximum yield attainable. However, these estimates can be biased in situations where yields are below full yield potential. Rice yields in the US continue to increase annually, suggesting that rice yields are not near the potential. In the interest of directing future efforts towards areas where improvement is most easily achieved, we estimated yield potential and yield gaps in US rice production systems, which are amongst the highest yielding rice systems globally. Zones around fourteen …

Smokey Comes Of Age: Unmanned Aerial Systems For Fire Management, Dirac L. Twidwell Jr., Craig R. Allen, Carrick Detweiler, James Higgins, Christian Laney, Sebastian Elbaum

Department of Agronomy and Horticulture: Faculty Publications

During the past century, fire management has focused on techniques both to protect human communities from catastrophic wildfire and to maintain fire-dependent ecological systems. However, despite a large and increasing allocation of resources and personnel to achieve these goals, fire management objectives at regional to global scales are not being met. Current fire management techniques are clearly inadequate for the challenges faced by fire managers, and technological innovations are needed. Advances in unmanned aerial systems (UAS) technology provide opportunities for innovation in fire management and science. In many countries, fire management organizations are beginning to explore the potential of UAS …

A Spatial-Dynamical Framework For Evaluation Of Satellite Rainfall Products For Flood Prediction, Felipe Quintero, Witold F. Krajewski, Ricardo Mantilla, Scott Small, Bong Chul Seo

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

Rainfall maps that are derived from satellite observations provide hydrologists with an unprecedented opportunity to forecast floods globally. However, the limitation of using these precipitation estimates with respect to producing reliable flood forecasts at multiple scales are not well understood. To address the scientific and practical question of applicability of space-based rainfall products for global flood forecasting, a data evaluation framework is developed that allows tracking the rainfall effects in space and time across scales in the river network. This provides insights on the effects of rainfall product resolution and uncertainty. Obtaining such insights is not possible when the hydrologic …

Deployment And Performance Analyses Of High-Resolution Iowa Xpol Radar System During The Nasa Ifloods Campaign, Kumar Vijay Mishra, Witold F. Krajewski, Radoslaw Goska, Daniel Ceynar, Bong Chul Seo, Anton Kruger, James J. Niemeier, Miguel B. Galvez, Merhala Thurai, V. N. Bringi, Leonid Tolstoy, Paul A. Kucera, Walter A. Petersen, Jacopo Grazioli

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

This article presents the data collected and analyzed using the University of Iowa's X-band polarimetric (XPOL) radars that were part of the spring 2013 hydrology-oriented Iowa Flood Studies (IFloodS) field campaign, sponsored by NASA's Global Precipitation Measurement (GPM) Ground Validation (GV) program. The four mobile radars have full scanning capabilities that provide quantitative estimation of the rainfall at high temporal and spatial resolutions over experimental watersheds. IFloodS was the first extensive test of the XPOL radars, and the XPOL radars demonstrated their field worthiness during this campaign with 46 days of nearly uninterrupted, remotely monitored, and controlled operations. This paper …

Impact Of Pre-Anthesis Water Deficit On Yield And Yield Components In Barley (Hordeum Vulgare L.) Plants Grown Under Controlled Conditions, Zakaria I. Al-Ajlouni, Ayed Al-Abdallat, Abdul Latief A. Al-Ghzawi, Jamal Y. Ayad, Jamal M. Abu Elenein, Nisreen A. Al-Quraan, P. Stephen Baenziger

Department of Agronomy and Horticulture: Faculty Publications

Drought at pre-anthesis stages can influence barley growth and results in yield losses. Therefore, it is important to understand how drought at pre-anthesis can affect different traits associated with yield reduction in barley. The objective of this study was to understand the relevance of the genetic background of major flowering time genes in barley plants subjected to pre-anthesis drought and its impact on yield and yield components. A glasshouse experiment using a Randomized Complete Block Design was conducted to investigate the effect of drought and its timing on yield and yield components on eleven barley genotypes, which were selected to …

The C-Terminal Motif Of Siago1b Is Required For The Regulation Of Growth, Development And Stress Responses In Foxtail Millet (Setaria Italica (L.) P. Beauv), Xiaotong Liu, Sha Tang, Guanqing Jia, James C. Schnable, Haixia Su, Chanjuan Tang, Hui Zhi, Xianmin Diao

Department of Agronomy and Horticulture: Faculty Publications

Foxtail millet (Setaria italica (L.) P. Beauv), which belongs to the Panicoideae tribe of the Poaceae, is an important grain crop widely grown in Northern China and India. It is currently developing into a novel model species for functional genomics of the Panicoideae as a result of its fully available reference genome sequence, small diploid genome (2n=18, ~510 Mb), short life cycle, small stature and prolific seed production. Argonaute 1 (AGO1), belonging to the argonaute (AGO) protein family, recruits small RNAs and regulates plant growth and development. Here, we characterized an AGO1 mutant (siago1b) in foxtail millet, which …

Expression Of Apoplast-Targeted Plant Defensin Mtdef4.2 Confers Resistance To Leaf Rust Pathogen Puccinia Triticina But Does Not Affect Mycorrhizal Symbiosis In Transgenic Wheat, Jagdeep Kaur, John Fellers, Alok Adholeya, Siva L.S. Velivelli, Kaoutar El-Mounadi, Natalya Nersesian, Thomas Clemente, Dilip Shah

Department of Agronomy and Horticulture: Faculty Publications

Rust fungi of the order Pucciniales are destructive pathogens of wheat worldwide. Leaf rust caused by the obligate, biotrophic basidiomycete fungus Puccinia triticina (Pt) is an economically important disease capable of causing up to 50 % yield losses. Historically, resistant wheat cultivars have been used to control leaf rust, but genetic resistance is ephemeral and breaks down with the emergence of new virulent Pt races. There is a need to develop alternative measures for control of leaf rust in wheat. Development of transgenic wheat expressing an antifungal defensin offers a promising approach to complement the endogenous resistance genes …

Corn (Zea Mays L.) Seeding Rate Optimization In Iowa, Usa, Mark A. Licht, Andrew W. Lenssen, Roger W. Elmore

Department of Agronomy and Horticulture: Faculty Publications

Collecting soil, topography, and yield information has become more feasible and reliable with advancements in precision technologies. Combined with the accessibility of precision technologies and services to farmers, there has been increased interest and ability to make site-specific crop management decisions. The objective of this research was to develop procedures to optimize corn seeding rates and maximize yield using soil and topographic parameters. Experimental treatments included five seeding rates (61 750; 74 100; 86 450; 98 800; and 111 150 seeds ha^-1) in a randomized complete block design in three central Iowa fields from 2012 to 2014 (nine …

Properties Of Self-Compacting Concrete With Recycled Coarse Aggregate, W. C. Tang, P. C. Ryan, H. Z. Cui, W. Liao

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

The utilization of recycled concrete aggregate (RCA) in Self-Compacting Concrete (SCC) has the potential to reduce both the environmental impact and financial cost associated with this increasingly popular concrete type. However, to date limited research exists exploring the use of coarse RCA in SCC. The work presented in this paper seeks to build on the existing knowledge in this area by examining the workability, strength, and fracture properties of SCCs containing 0%, 25%, 50%, 75%, and 100% coarse RCA. The experimental programme indicated that at RCA utilization levels of 25% to 50% little or no negative impact was observed for …

Digital Badges For Stem Learning In Secondary Contexts: A Mixed Methods Study, Angela Elkordy

Master's Theses and Doctoral Dissertations

The deficit in STEM skills is a matter of concern for national economies and a major focus for educational policy makers. The development of Information and Communications Technologies (ICT) has resulted in a rapidly changing workforce of global scale. In addition, ICT have fostered the growth of digital and mobile technologies which have been the learning context, formal and informal, for a generation of youth. The purpose of this study was to design an intervention based upon a competency-based, digitally-mediated, learning intervention: digital badges for learning STEM habits of mind and practices. Designed purposefully, digital badge learning trajectories and criteria …

The Vaccine And The Virus: An Autoethnographic Account Of Hpv, Sex Education, And The Psychosocial Effects Of Sti's, Jamie L. Morgan

Master's Theses and Doctoral Dissertations

In 2006 the Food and Drug Administration (FDA) approved the Gardasil vaccine to assist in the protection from the Human Papillomavirus (HPV): The leading contributor to cervical cancer. After stressing the importance of the vaccine, but disregarding its inadequacies, young women were subjected to invasive and excessive protocols. This study utilizes autoethnographic methods to understand the psychological and social effects of the individuals who were diagnosed with HPV before the release of the Gardasil 9 vaccine in 2014 and forced to go through these unnecessary procedures before the medical field began adopting imperative changes to treatment.

Effects Of Emotional Intelligence On Academic Achievement In The Alternative High School Classroom, Rhonda L. Marcum-Phillips

Master's Theses and Doctoral Dissertations

This study examines the impact of emotional intelligence, academic self-efficacy in science and technology, and family background on academic achievement of alternative high school students. Gender, age, learning style, and ethnicity of the student are analyzed to determine any moderator effect on these relationships. Seventy-five students, ages 14 to19, who attend a public alternative high school were surveyed. Analysis of the data revealed a positive relationship for males between self-efficacy in STEM classes and family background (support) and their academic achievement in science class. A positive relationship was shown between self-efficacy in STEM classes and academic achievement, between self-efficacy in …

Construction Of An Optical Fiber Strian Gauge, Najwa Sulaiman

Master's Theses and Doctoral Dissertations

This project is focused on the construction of an optical fiber strain gauge that is based on a strain gauge described by Butter and Hocker. Our gauge is designed to generate an interference pattern from the signals carried on two bare single-mode fibers that are fastened to an aluminum cantilever. When the cantilever experiences flexural stress, the interference pattern should change. By observing this change, it is possible to determine the strain experienced by the cantilever. I describe the design and construction of our optical fiber strain gauge as well as the characterization of different parts of the apparatus.

Mapping Citizenship: Status, Membership, And The Path In Between, D. Carolina Nuñez

Faculty Scholarship

No abstract provided.

Increasing Off-Chip Bandwidth And Mitigating Dark Silicon Via Switchable Pins, Shaoming Chen

LSU Doctoral Dissertations

Off-chip memory bandwidth has been considered as one of the major limiting factors to processor performance, especially for multi-cores and many-cores. Conventional processor design allocates a large portion of off-chip pins to deliver power, leaving a small number of pins for processor signal communication. We observed that the processor requires much less power than that can be supplied during memory intensive stages in some cases. In this work, we propose a dynamic pin switch technique to alleviate the bandwidth limitation issue. The technique is introduced to dynamically exploit the surplus pins for power delivery in the memory intensive phases and …

Full State Revivals In Linearly Coupled Chains With Commensurate Eigenspectra, J. J. P. Veerman, Jovan Petrovic

Mathematics and Statistics Faculty Publications and Presentations

Coherent state transfer is an important requirement in the construction of quantum computer hardware. The state transfer can be realized by linear next-neighbour-coupled finite chains. Starting from the commensurability of chain eigenvalues as the general condition of periodic dynamics, we find chains that support full periodic state revivals. For short chains, exact solutions are found analytically by solving the inverse eigenvalue problem to obtain the coupling coefficients between chain elements. We apply the solutions to design optical waveguide arrays and perform numerical simulations of light propagation thorough realistic waveguide structures. Applications of the presented method to the realization of a …

Associations Between Performance On An Abbreviated Cogstate Battery, Other Measures Of Cognitive Function, And Biomarkers In People At Risk For Alzheimer's Disease, Annie M. Racine, Lindsay R. Clark, Sara C. Berman, Rebecca L. Koscik, Kimberly D. Mueller, Derek Norton, Christopher R. Nicholas, Kaj Blennow, Henrik Zetterberg, Bruno M. Jedynak, Murat Bilgel, Cynthia M. Carlsson, Bradley T. Christian, Sanjay Asthana, Sterling C. Johnson

Mathematics and Statistics Faculty Publications and Presentations

It is not known whether computerized cognitive assessments, like the CogState battery, are sensitive to preclinical cognitive changes or pathology in people at risk for Alzheimer's disease(AD). In 469 late middle-aged participants from the Wisconsin Registry for Alzheimer's Prevention(mean age 63.8±7 years at testing; 67% female; 39% APOE4+), we examined relationships between a CogState abbreviated battery(CAB) of seven tests and demographic characteristics, traditional paper-based neuropsychological tests as well as a composite cognitive impairment index, cognitive impairment status(determined by consensus review), and biomarkers for amyloid and tau(CSF phosphorylated-tau/Aβ42 and global PET-PiB burden) and neural injury(CSF neurofilament light protein). CSF and PET-PiB …

Voxel Based Morphometry In Optical Coherence Tomography: Validation & Core Findings, Bhavna J. Antony, Min Chen, Aaron Carass, Bruno M. Jedynak, Omar Al-Louzi, Sharon D. Solomon, Shiv Saidha, Peter Calabresi, Jerry L. Prince

Mathematics and Statistics Faculty Publications and Presentations

Optical coherence tomography (OCT) of the human retina is now becoming established as an important modality for the detection and tracking of various ocular diseases. Voxel based morphometry (VBM) is a long standing neuroimaging analysis technique that allows for the exploration of the regional differences in the brain. There has been limited work done in developing registration based methods for OCT, which has hampered the advancement of VBM analyses in OCT based population studies. Following on from our recent development of an OCT registration method, we explore the potential benefits of VBM analysis in cohorts of healthy controls (HCs) and …

Building Resiliency In Response To Sea Level Rise And Recurrent Flooding: Comprehensive Planning In Hampton Roads, Joshua G. Behr, Rafael Diaz, Molly Mitchell

VMASC Publications

[Introduction]

Over the past few decades, the Hampton Roads region, with its extensive coastline, has been experiencing more frequent flooding from surges and precipitation caused by tropical storms, nor’easters and heavy thunderstorms (Figure 1). Recurrent flooding is “flooding that occurs repeatedly in the same area over time due to precipitation events, high tides or storm surge.”¹ The recurrence of tidal/surge flooding in Hampton Roads has increased from 1.7 days of “nuisance” flooding per year in 1960 to 7.3 days per year in 2014.² Although there is no definitive region-wide data to document the increases in precipitation-induced flooding, there …

Panic That Spreads Sociobehavioral Contagion In Pedestrian Evacuations, Terra Elzie, Erika Frydenlund, Andrew J. Collins, R. Michael Robinson

VMASC Publications

Crowds are a part of everyday public life, from stadiums and arenas to school hallways. Occasionally, pushing within the crowd spontaneously escalates to crushing behavior, resulting in injuries and even death. The rarity and unpredictability of these incidents provides few options to collect data for research on the prediction and prevention of hazardous emergent behaviors in crowds. This study takes a close look at the way states of agitation, such as panic, can spread through crowds. Group composition—mainly family groups composed of members with differing mobility levels—plays an important role in the spread of agitation through the crowd, ultimately affecting …

Love Sip, Tianshu Liu

Theses

Love Sip is an animated graduate thesis film. The entire film, including the credits, is 4 minutes 58 seconds long. The premier of the film occurred in December 2015 in the School of Film and Animation’s end of semester screenings at Rochester Institute of Technology.

The story takes place in a vending machine. The main characters are a bottle of Soda and a bottle of Juice. They fall in love and try to escape from the vending machine. Their journey is challenging, action packed, and with the promise that their love for each will survive.

Love Sip is a 3D …

Identifying The Potential Environmental Impacts Of Engineered Nanomaterials, Therese Garvey

Theses

Engineered Nanomaterials (ENMs) are increasingly manufactured and incorporated into a diverse array of consumer products and industrial uses. While ENMs are touted for their technological and efficiency benefits, the potential impacts of increasing emissions and exposures to ENMs are poorly understood. This dissertation takes a critical look at the current knowledge in impact assessment of nanomaterials. First, the current metrics for impact assessment of traditional methods are compared with the proposed set of metrics necessary for nanomaterial impact assessment. Next, in order to understand the potential environmental impacts in context, characterization factors for four case study nanomaterials are modeled using …

Introducing Design For Six Sigma’S Dmadv Methodology To The Packaging Industry, Sumeet Deshpande

Theses

The purpose of this thesis was to introduce a standard method for designing efficient and sustainable packages to the packaging industry. This thesis has focused on how a standardized process has helped to design efficient, cost-effective and sustainable packages in the food industry. The standardized process used was the lean six-sigma methodology called DMADV.

The DMADV methodology has been implemented for inventing and innovating major new features of existing products, services or processes.

The main objective of this research was to:

1. Introduce the lean six-sigma DMADV methodology to the packaging industry.

2. Show how a DMADV methodology can be …

Extreme Contrast Enchantment Of An All-Optical And Gate, Saif Al Graiti

Theses

We experimentally demonstrate a 31.2-dB-contrast all-optical AND gate based on a Fabry-Pérot semiconductor optical amplifier (SOA). Typically, cross phase modulation is the dominant nonlinearity as it shifts a FPSOA resonance to trigger the AND-gate functionality. Cross polarization modulation (XPolM) is introduced here to produce a distinct output SOP for the high-state power that is different from the low-state power. A linear polarizer is used to block the low-state power to enhance the contrast by 24 dB, far exceeding previous demonstrations for such FPSOA gates.

Getting Kosovo Back To Work - Assessing Youth Employability In Kosovo, Iliriana Halili

Theses

The aim of this research project is to analyze the supply side of Kosovo’s labor market with a focus on the employability of youth in Kosovo. In this Honors Project, I place special focus on analyzing the extent that the youth of Kosovo is prepared to enter and stay in the labor market. By placing particular focus on that area, I will be able to thoroughly examine Kosovo’s education system which represents the basis for the development of human capital; in particular, I analyze whether it is fostering or hampering the employability of youth in Kosovo. The data collected were …

Kentucky Traffic Collision Facts 2015, Kentucky Transportation Center, Kentucky State Police

Kentucky Transportation Center Research Report

KENTUCKY’S TRAFFIC COLLISION FACTS report for 2015 is based on collision reports submitted to the Kentucky State Police Records Branch. As required by Kentucky Revised Statutes 189.635, “every law enforcement agency whose officers investigate a vehicle accident of which a report must be made...shall file a report of the accident...within ten days after investigation of the accident upon forms supplied by the bureau.” The stated purpose of this requirement is to utilize data on traffic collisions for such purposes as will improve the traffic safety program in the Commonwealth. Data contained in this report are based solely on the observations …

Experimental Rapid Renewal Project (Bridge Construction), Bobby W. Meade, Sudhir Palle, Theodore Hopwood Ii

Kentucky Transportation Center Research Report

The objectives of this study were to develop specifications and contract language and to monitor the implementation them to effectively use rapid reconstruction and extended service life concepts in new bridge construction. Through the use of A + B bidding, a duplex protective coating system using Hot Dipped Galvanizing (HDG) and paint, and preservation techniques such as concrete sealers and stains the Kentucky Transportation Cabinet attained those goals.

Internet Of Things To Smart Iot Through Semantic, Cognitive, And Perceptual Computing, Amit P. Sheth

Publications

Rapid growth in the Internet of Things (IoT) has resulted in a massive growth of data generated by these devices and sensors put on the Internet. Physical-cyber-social (PCS) big data consist of this IoT data, complemented by relevant Web-based and social data of various modalities. Smart data is about exploiting this PCS big data to get deep insights and make it actionable, and making it possible to facilitate building intelligent systems and applications. This article discusses key AI research in semantic computing, cognitive computing, and perceptual computing. Their synergistic use is expected to power future progress in building intelligent systems …

Nonrecursively Interconnected Fliess Operators Preserve Global Convergence: An Expanded View, Irina M. Winter-Arboleda, Luis A. Duffaut Espinosa, W. Steven Gray

Electrical & Computer Engineering Faculty Publications

A common representation of an input-output system in nonlinear control theory is the Chen-Fliess functional series or Fliess operator. Such a functional series is said to be globally convergent when there is a no a priori upper bound on both the L₁-norm of an admissible input and the length of time over which the corresponding output is well defined. Recent developments have expanded the class of globally convergent Fliess operators. The goal of this paper is to show that the global convergence property is preserved for nonrecursive inter-connections (i.e., the parallel, product and cascade connections) involving this largest known class …