Digital Commons Network^™

Gonadal Intersex In Teleosts: Mechanisms, Molecular Biomarkers And Diagnostic Assays, Ahmed M.E. Abdel-Moneim Mohamed

Open Access Dissertations

Natural and synthetic estrogenic and androgenic compounds are continuously released into aquatic ecosystems. Exposure of teleost fishes to these contaminants can negatively impact sex differentiation and reproductive output. Specifically, development of gonadal intersex in gonochoristic (fixed sex) fish species has been studied extensively in relation to exposure to this class of compounds. The main objectives of this dissertation were to: 1) conduct field and laboratory studies to investigate the molecular signaling pathways behind the development of gonadal intersex; and 2) establish molecular biomarkers and assays for testing the ability of environmental pollutants to develop this condition using a battery of …

Ambient Ionization - Mass Spectrometry: Advances Toward Intrasurgical Cancer Detection, Alan Keith Jarmusch

Open Access Dissertations

My dissertation research has focused on the development of ambient ionization – mass spectrometry (MS) for clinical measurements, specifically intrasurgical cancer detection. The molecular differences between normal and cancerous tissue were detected via direct tissue analysis in vitro by touch spray ionization (TS) or by analyzing sectioned or smeared tissue using desorption electrospray ionization (DESI). The physical form of the tissue, e.g. in vitro sampling, sectioned, or smeared, was inconsequential in differentiating normal from cancerous tissue; however, the spectra acquired by TS and DESI differed due to differences in ionization processes. We envision that TS-MS and DESI-MS could impact diagnostic …

Functional And Structural Characterization Of The Mevalonate Diphosphate Decarboxylase And The Isopentenyl Diphosphate Isomerase From Enterococcus Faecalis, Chun-Liang Chen

Open Access Dissertations

Enterococcus faecalis causes a diverse range of nosocomial infections (in wounds, the gastrointestinal tract, the blood stream and the endocardium), and multidrug-resistant strains have become a serious issue across countries. Vancomycin, a FDA-approved drug for the disruption of the bacterial cell wall biosynthesis, has been utilized to treat infectious diseases caused by Enterococci; however, the prevalence of vancomycin-resistant enterococci (VRE) threatens communities all over the world. We aim at developing novel therapeutic strategies to control bacterial growth of Enterococci, and we focus on targeting two essential enzymes involved in poly-isoprenoid biosynthesis in Enterococcus faecalis; one is the mevalonate diphosphate decarboxylase …

A Method For Selecting Hvac Retrofit Solutions For Existing Small- And Medium-Sized Commercial Buildings, Bonggil Jeon

Open Access Dissertations

The primary purpose of the present study is to develop a framework and methodology for evaluating appropriate Heating, Ventilating, and Air Conditioning (HVAC) retrofit solutions that can be effectively retrofitted into different types of small- and medium-sized commercial buildings (SMSCB). Additionally, development of an advanced data-driven decision-making tool is introduced as a benefit of proposed framework. In recent years, considerable attention has been focused on retrofits of existing commercial buildings (IBE, 2013b). In fact, the Commercial Building Energy Consumption Survey (CBECS) 2003 (EIA, 2006) indicates that over 70% of existing commercial buildings across the United States are more than twenty …

Device Design Factors For Enhancing The Functionality Of Chronic Intracortical Microelectrodes, Heui Chang Lee

Open Access Dissertations

Intracortical microelectrodes are devices used in brain-computer interfaces (BCI) to help regain lost motor, sensory, and cognitive functions of individuals with neurological disorders. However, the long-term performance of microelectrode arrays is hampered by a series of inflammatory tissue responses. The consequence of the inflammatory response is the formation of a dense astroglial sheath around the vicinity of the electrode, impeding the electrical conduction between the electrode and neurons. Furthermore, due to the cascade of neuroinflammatory events, the number of neurons is significantly reduced near the electrode, manifested by decrease in signal-to-noise ratio (SNR) and the yield of electrodes. Over time, …

The Development Of Preclinical Strategies For Facilitation Of Lead Candidate Selection, Christopher Dale Kulczar

Open Access Dissertations

Chapter 1 details a background of techniques used for modeling the blood-brain barrier (BBB). The BBB represents a diffusive barrier to both paracellular and transcellular movement of many compounds in and out of the brain. The main rate- limiting barriers of the BBB include exclusive tight junctions that prevent the movement of hydrophilic molecules through intercellular gaps, and efflux proteins in the membrane which pump many hydrophobic molecules back into the blood. In addition, the BBB contains metabolizing enzymes, including Cytochrome P450s. This barrier acts to protect the vulnerable tissues of the brain from harmful xenobiotics, but also can serve …

Functional Diversity Enhances Detection Of Ecosystem Stability And Resolution Of Predator-Prey Interactions Within A Multitrophic Community, Ashley Lorraine Kissick

Open Access Dissertations

Habitat fragmentation and loss are principal factors that contribute to the decline of biodiversity which in turn has a negative impact on ecosystem function. There has been growing interest in understanding diversity’s role in the mechanisms behind ecosystem resilience with much attention focusing on how functional diversity, or the range of species’ ecological roles in a community, impacts ecosystem function. Under the functional insurance hypothesis, stability in ecosystems is maintained by species that perform similar functions but have asynchronous responses to disturbance. There are three proposed stability mechanisms that operate through species’ asynchronous responses: cross-scale resilience, response diversity, and density …

Quantifying Terrestrial Ecosystem Carbon Dynamics With Mechanistically-Based Biogeochemistry Models And In Situ And Remotely Sensed Data, Shaoqing Liu

Open Access Dissertations

Terrestrial ecosystem plays a critical role in the global carbon cycle and climate system. Therefore, it is important to accurately quantify the carbon dynamics of terrestrial ecosystem under future climatic change condition. This dissertation evaluates the regional carbon dynamics by using upscaling approach, mechanistically-based biogeochemistry models and in situ and remotely sensed data.

The upscaling studies based on FLUXNET network has provided us the spatial and temporal pattern of the carbon fluxes but it fails to consider the atmospheric CO2 effect given its important physiological role in carbon assimilation. In the second chapter, we consider the effect of atmospheric CO2 …

College Students' Suicidal Ideation: Testing The Predictions Of The Existential - Constructivist Theory Of Suicide, Jennifer Danielle Lockman

Open Access Dissertations

Suicide is the second leading cause of death in the college student population (Schwartz, 2006), and empirically supported theories for understanding suicide among college students are lacking (Lester, 1989; Prinstein, 2008; Rogers & Benson, 2013). Although not yet examined empirically, Rogers (2001) proposed an Existential - Constructivist Theory of Suicide (ECTS), in which existential distress and the inability to reconstruct meaning from adverse life events contribute to suicidal ideation. ECTS includes both interpersonal and intrapersonal drivers of suicidal ideation, and for this reason, may better explain suicidal ideation in college students than existing theoretical models. Existing research focuses on Joiner’s …

Hydrodynamics Of Swimming Microorganisms In Complex Fluids, Gaojin Li

Open Access Dissertations

Swimming motion of microorganisms, such as spermatozoa, plankton, algae and bacteria, etc., ubiquitously occurs in nature. It affects many biological processes, including reproduction, infection and the marine life ecosystem. The hydrodynamic effects are important in microorganism swimming, their nutrient uptake, fertilization, collective motions and formation of colonies. In nature, microorganisms have evolved to use various fascinating ways for locomotion and transport. Different designs are also developed for the locomotion of artificial nano- and microswimmers. In this study, we use several different computational models to investigate the behavior of microswimmers.

Microorganisms typically swim in the low Reynolds number regime, where inertia …

Managing Bacterial Wilt, Caused By Erwinia Tracheiphila, On Muskmelon With Early Control Of Striped Cucumber Beetle ( Acalymma Vittatum (F)), And Through Varietal Selection, Ahmad Shah Mohammadi

Open Access Dissertations

Muskmelon (Cucumis melo L), is an important vegetable crop in the United States. It is grown throughout the US, and Indiana ranked 4th in production after California, Arizona and Georgia with 12.4 thousand metric tons and market value of $7.6 million in 2015. Bacterial wilt of cucurbits, which is caused by Erwinia tracheiphila (E. F. Smith), and vectored by striped cucumber beetle (Acalymma vittatum (F)), is one of the most serious diseases of muskmelon that influences muskmelon quality and yield. Many cultivars of muskmelon are grown around the United States, especially in the Midwest. Muskmelon cultivars differ in …

State Judicial Selection Methods As Public Policy: The Missouri Plan, James A. Gleason

Open Access Dissertations

State judiciaries are foundational institutions of governance in the United States. They are coequal, policy-making branches of government whose members, along with the legislative and executive branches, are constitutionally authorized and empowered in all fifty American states. Extant research on judicial selection in the American states provides neither a comprehensive theory of why states choose their particular judicial selection method nor a comprehensive empirical assessment of this important question. This research seeks to fill this lacuna by increasing understanding of American state courts through the formulation of a theory of state judicial selection, a short but comprehensive history of state …

Laser-Processed Parchment Paper For Fabrication Of Chronic Wound Dressings With Selective Oxygenation, Manuel Ochoa

Open Access Dissertations

Chronic non-healing wounds (e.g., diabetic foot ulcers and bed sores) impact over 6.5 million Americans per year, costs in excess of $25 billion to treat on an annual basis, and are on the rise due to increasing levels of obesity and diabetes compounded by an aging population. A major inhibitor of healing is suboptimal oxygenation of the wound bed. Unlike acute injuries that receive sufficient oxygen via a functional blood vessel network, chronic wounds often suffer from the lack of a proper vascular network; thus being incapable of providing sufficient oxygen for tissue growth. Typical medical treatment of hypoxic chronic …

Race, Class And Gender In Engineering Education: A Quantitative Investigation Of First Year Enrollment, Canek Moises Luna Phillips

Open Access Dissertations

Research explanations for the disparity across both race and gender in engineering education has typically relied on a deficit model, whereby women and people of color lack the requisite knowledge or psychological characteristics that Whites and men have to become engineers in sufficient numbers. Instead of using a deficit model approach to explain gender and race disparity, in the three studies conducted for this dissertation, I approach gender and race disparity as the result of processes of segregation linked to the historic and on-going perpetuation of systemic sources of oppression in the United States. In the first study, I investigate …

Investigating The Effects Of Ph On Alphaviral E3-E2 Glycoprotein Association, Organization, And Cellular Tropism, Jason Michael Sequra

Open Access Dissertations

In alphaviruses the role of E3 is required in protecting the fusion peptide region of E1 during intracellular transport. Throughout viral processing, the association of E2 and E3 is required for the successful trafficking and incorporation of E1 into the mature virion. This E3-E2 association has been observed to extend to mature virions in the solved structure for the envelope of Semliki Forest virus (SFV) and supported by the solved structure for the entire Venezuelan equine encephalitis virion (VEEV) with exclusive contacts being made between E3-E2. Immunization with monoclonal antibodies against VEEV E3 provided protection for mice challenged by lethal …

Adaptive Sampling Trust-Region Methods For Derivative-Based And Derivative-Free Simulation Optimization Problems, Sara Shashaani

Open Access Dissertations

We consider unconstrained optimization problems where only “stochastic” estimates of the objective function are observable as replicates from a Monte Carlo simulation oracle. In the first study we assume that the function gradients are directly observable through the Monte Carlo simulation. We propose ASTRO, which is an adaptive sampling based trust-region optimization method where a stochastic local model is constructed, optimized, and updated iteratively. ASTRO is a derivative-based algorithm and provides almost sure convergence to a first-order critical point with good practical performance. In the second study the Monte Carlo simulation is assumed to provide no direct observations of the …

Investigation Of Methods For Reducing Aflatoxin Contamination In Distillers Grains, Hu Shi

Open Access Dissertations

The overall goal of this project was to reduce the aflatoxin level in the final coproduct of ethanol bioprocessing--DDGS. This was pursued by examining the effects of reduction of aflatoxin in the incoming corn prior to bioprocessing, the degradation of aflatoxin in the intermediate products, namely DWG and CDS, during processing, and aflatoxin degradation in the DDGS. Segregation techniques (size screening and density sorting) and detoxification methods (conventional and microwave heating, food additives, and high voltage atmospheric cold plasma) were evaluated for their effectiveness in aflatoxin reduction.

Effectiveness of physical segregation of aflatoxin contaminated corn was investigated by size screening …

Improving And Elucidating Factors Regulating Black Walnut (Juglans Nigra L.) Clonal Propagation, Micah E. Stevens

Open Access Dissertations

Black walnut (Juglans nigra L.) is a fine hardwood tree species native to the central hardwood region of the United States. High-quality black walnut timber is highly desirable. Traded in both regional and global markets, it has been used for veneer, and the manufacture of high-end products such as cabinets, furniture, and gunstocks. As a result of its high economic value, black walnut has been commercially cultivated for many years, and breeding programs have generated superior timber genotypes with improved marketable traits. Once elite genotypes were developed, it was quickly recognized that black walnut was recalcitrant to clonal propagation …

Dynamic Regulation Of Dna Demethylation And Rna-Directed Dna Methylation In Arabidopsis, Kai Tang

Open Access Dissertations

DNA methylation is an important epigenetic mark present in many eukaryotes, and is involved in many crucial biological processes, such as gene imprinting, regulation of gene expression, and genome stability. Proper genomic DNA methylation patterns are achieved through the concerted action of DNA methylation and demethylation pathways. In the model plant species Arabidopsis thaliana, ROS1 (REPRESSOR OF SILENCING 1) is one of the DNA demethylases and the key component in the demethylation pathway. Dysfunction of ROS1 leads to increase in DNA methylation level at thousands of genomic loci. However, the features of ROS1 targets are not well understood. In the …

Repurposing Non-Antimicrobial Drugs To Treat Multi-Drug Resistant Bacterial And Fungal Infections, Shankar Thangamani

Open Access Dissertations

Bacterial and fungal resistance to conventional antimicrobials is a burgeoning global health epidemic that necessitates urgent action. Even more alarming, the development of new antimicrobials to treat these multidrug-resistant pathogens has not kept pace with the rapid emergence of resistance to current antimicrobials. Antimicrobial drug development through the traditional de novo process is a risky venture given the significant financial and time investment required by researchers and limited success rate of translating these compounds to the clinical setting. This has led researchers to mine existing libraries of clinical molecules in order to repurpose old drugs for new applications (as antimicrobials). …

Policy Design Tool For Managing Indoor Residential Water Demand In Water-Scarce Regions, Mujahed M. Thneibat

Open Access Dissertations

In view of population growth; climate change; and economic evolution, water resources in numerous parts of the world have reached their natural capacities. Consequently, the ability of many countries to grow; meet the basic needs of inhabitants; and protect the environment will be endangered like never before unless water resources are smartly handled and managed. ^ In the past few decades, many developed and developing countries have suffered from water scarcity, and more are certain to follow. The water security dilemma is much more challenging in developing countries. Water utilities have had to follow regulatory plans to manage demand on …

Approximate Computing: An Integrated Cross-Layer Framework, Swagath Venkataramani

Open Access Dissertations

A new design approach, called approximate computing (AxC), leverages the flexibility provided by intrinsic application resilience to realize hardware or software implementations that are more efficient in energy or performance. Approximate computing techniques forsake exact (numerical or Boolean) equivalence in the execution of some of the application’s computations, while ensuring that the output quality is acceptable. While early efforts in approximate computing have demonstrated great potential, they consist of ad hoc techniques applied to a very narrow set of applications, leaving in question the applicability of approximate computing in a broader context.

The primary objective of this thesis is to …

Understanding The Formation Of American Mental Health Policy Preferences, 1952-1981, Andrew D. Tuholski

Open Access Dissertations

In the United States, the emergence of an outpatient-centered, drug-based model of mental health care was physically feasible from the 1950s onward, with the introduction of thorazine and other first-generation antipsychotics. However, it was not until 1981, with President Reagan’s veto of the Mental Health Systems Act, that American mental health policy tipped over definitively into the outpatient-centered, drug-based model. In this quantitative study of the formation of policy preference, the delay between the feasibility of the outpatient-centered, drug-based model and its adoption was explored through five research questions answered through corpus analysis and time series statistics: How do shifts …

Examining The Impact Of The Affordable Care Act On Small Businesses And Industries In Northwest Indiana, Onias Muza Taruwinga

Open Access Dissertations

This research examined the lived experiences of small businesses in Northwest Indiana with the implementation of the Affordable Care Act. The interviews were conducted over a period of six months with an attempt to answer the question, “What was the impact of the Affordable Care Act on small businesses and industries in Northwest Indiana?” Additional research questions were, “Did the Affordable Care Act extend coverage to the uninsured, include other medical services that were not covered before, and reduce cost sharing and what lessons can be learned from the implementation of the Affordable Care Act for future policy implementation?” 15 …

Unraveling The Fingerprints Of Nox Using Stable Isotopes: Implications For Nox Source Partitioning And Oxidation Chemistry, Wendell William Walters

Open Access Dissertations

The nitrogen (N) and oxygen (O) stable isotope composition (δ15N & δ18O) of nitrogen oxides (NOx )may be a useful tool for constraining NOx emission sources as well as for understanding the atmospheric oxidation pathways responsible for its removal if various NOx sources and sink processes exhibit characteristic isotopic compositions (“fingerprints”). However, this requires (1) an accurate and complete inventory of δ15N(NOx) values from major emission sources, (2) an assessment of the kinetic and equilibrium isotope effects that can impact δ15N and δ18O values of NOx, (3) and test these assumptions by conducting accurate in situ δ15N and δ18O measurements …

The Relationship Between Protein And Phosphorus Digestion And Retention In Growing Pigs And Broiler Chickens, Pengcheng Xue

Open Access Dissertations

Xue, Pengcheng. Ph.D., Purdue University, December 2016. The Relationship between Protein and Phosphorus Digestion and Retention in Growing Pigs and Broiler Chickens. Major Professor: Dr. Layi Adeola. The objective of this study was to investigate the relationship between protein and P digestion and retention in growing pigs and broiler chickens. The methodology of determining the digestibility of AA and P and the effect of dietary N and P on the digestion and retention of these two nutrients were investigated.

An experiment was conducted in growing pigs to investigate the additivity of AID or SID of CP and AA in mixed …

The Effects Of Dietary Probiotic Inclusion On Skeletal Health Of Poultry And Its Possible Mechanisms, Feifei Yan

Open Access Dissertations

Probiotics are live microorganisms which may confer health benefits on the host when administered in appropriate amounts. Numerous studies have shown that probiotics improve bone health in humans and rodents with less information available on the skeletal health of avians given probiotics. The objective of this study was to determine the effects of probiotic supplementation on bone health of egg-laying and meat-type chickens. Dietary supplementation of a multi-species based probiotic reduced the percentage of shell-less eggs beginning at 4 wk following treatment and increased tibial and femoral bone mineral density in egg-laying hens at 7 wk post-treatment. Similarly, bone mineralization …

Mechanistic Insight Into The Role Of Dietary Fibers And Short Chain Fatty Acids In The Regulation Of Metabolism And Inflammation In The Pig, Hui Yan

Open Access Dissertations

Dietary fiber is a diverse mixture of polysaccharides exerting multiple functions as it passes through the gastrointestinal tract (GIT). Besides the influence on nutrient digestibility, dietary fiber affects growth performance and host metabolism via modulation of gut microbial community structure and production of short chain fatty acids (SCFA). A series of in vivo experiments were conducted to determine the effects of dietary fiber on pig growth performance and gut microbial community as well as host metabolism. In the first study, a comparison between soluble and insoluble fibers was conducted in terms of pig growth, gut microbial structure and SCFA production …

Seeking Interdependence: Commitment Desirability And The Initiation And Maintenance Of Close Relationships, Yu-Yang Kenneth Tan

Open Access Dissertations

People vary in the extent to which they believe that a committed relationship is desirable for them. The current research offers and examines the concept of commitment desirability, defined as the subjective desire to be involved in a committed romantic relationship. In six studies, the present research developed and tested a measure of commitment desirability and explored how it influences relationship initiation among those not currently involved in a relationship, and maintenance and dissolution decisions among those who are involved in a relationship. Study 1 and 2a developed and validated a reliable measure of commitment desirability. Study 2b examined the …

Professional Product Review Vol. 11 No. 3, American Dental Association, Council On Scientific Affairs

Professional Product Review

A user-friendly newsletter from the ADA Council on Scientific Affairs offering scientifically sound, unbiased, and clinically relevant information to member dentists about professional dental products tested by the ADA. This collection is historical and may not reflect current standards. For up-to-date information contact the ADA.