Digital Commons Network^™

Beyond The Expansion Framework: How Same-Sex Marriage Changes The Institutional Meaning Of Marriage And Heterosexual Men's Conception Of Marriage, Alan J. Hawkins, Jason S. Carroll

Faculty Publications

Social institutions profoundly affect human behavior. They provide human relationships with meaning, norms, and patterns, and in doing so encourage and guide conduct; they are the "humanly devised constraints that shape human interaction." That is their function. And when the definitions and norms that constitute a social institution change, the behaviors and interactions that the institution shapes also change.

A Grounded Theory Model For Faculty Evaluation Of Nursing Student Performance During A Simulation, Penni Isla Watts

All ETDs from UAB

This qualitative grounded theory study explored the process of faculty evaluation of student performance during simulation in the southern United States. In the last decade, simulation experiences have been found to be useful in nursing education as a teaching methodology and as a potential method for evaluation of student performance. While clinical experiences are limited, unpredictable, and difficult to truly evaluate, simulation experiences provide an opportunity for students to manage care through pre-planned patient scenarios without potential harm to real patients. This allows faculty to observe students making decisions and caring for simulated patients in a context designed to elicit …

Characterizing The Nuclear Import And Functions Of Cystin, The Ciliary Protein Disrupted In The Cpk Mouse Model Of Recessive Polycystic Kidney Disease, Jacob Asher Watts

All ETDs from UAB

Autosomal recessive polycystic kidney disease (ARPKD; MIM 263200) is a ma-jor cause of pediatric morbidity and mortality. Typically, orthologous animal models are the mainstay for pathogenic studies of human diseases. However, gene-targeting of Pkhd1, the mouse ortholog of the ARPKD gene, results in mutants with little or no kidney disease. In contrast, disruption of the non-orthologous gene, Cys1, in the cpk mouse model closely phenocopies human ARPKD. We speculate that this phenotypic similarity suggests that the Pkhd1 and Cys1 genes encode proteins (FPC and cystin, respectively) that share, at least in part, common molecular pathways. Our laboratory, as well as …

Effectiveness Of Functional Electrical Stimulation Assisted Rowing To Improve Shoulder Pain And Aerobic Fitness In Manual Wheelchair Users With Spinal Cord Injury, Susan Wilbanks

All ETDs from UAB

Exercise is beneficial to adults with spinal cord injury (SCI) because of its ability to improve function and increase life expectancy. The goal of this dissertation was to determine an effective intervention for increasing aerobic fitness and decreasing shoulder pain in manual wheelchair users with SCI by identifying underlying mechanisms for shoulder pain, optimizing training and utilizing appropriate outcome measures. Three studies were conducted. The first study indicated that exercise interventions for adults with SCI are of low to moderate methodological quality, frequently using outcome measures associated with changes in body structures and functions, and not frequently examining effects on …

Web Computing For Bioinformatics Applications, Sean Wilkinson

All ETDs from UAB

This work explores web computing as a solution to current problems in informatics, including algorithm delivery, distributed computation, and data visualization. A novel computing platform called QMachine has been developed for use in clinical research environments for computationally intensive applications like medical image processing and genomics sequence processing. In such applications, the emergence of Big Data as the inevitable reference for the analysis of local (“small”) data from individual experiments or patients has presented numerous challenges. In particular, computational workflows that handle Big Data need significantly greater processing and memory resources. Advances in virtualization – especially in cloud computing – …

Examining The Relationship Between Driving Styles Of Teen Drivers And Their Parents, Shannon Michelle Oram Wittig

All ETDs from UAB

Teenage drivers, ages 16 to 19, account for about 16.8% of motor vehicle crashes (MVCs) in the United States, even though teenagers only represent about 4.4% of the United States population. Several factors increase teenagers’ risk for MVCs including: lack of driving experience, poor ability to identify and anticipate hazards, lack of sensitivity to road complexity and conditions, and increased willingness to take risks. Research has also suggested the importance of parental influences on risky teenage driving. This study examined the effects of parental driving styles, behaviors, and history on teenagers’ driving style using self-reported measures. Overall, it was hypothesized …

Bioavailability Of Dietary Oxalate, Mary Catherine Robertson

All ETDs from UAB

Urolithiasis, or kidney stone disease, is a costly and painful health problem affecting about 8.8% of Americans with prevalence on the rise. Calcium oxalate stones account for about 80% of all stones. Increased urinary excretion of calcium and oxalate is a risk factor and central feature of such stones; dietary oxalate contributes up to 50% of urinary oxalate. The purpose of our research is to determine if physical manipulation such as chewing or blending prior to ingestion may render some oxalate more accessible for absorption in spinach, a high-oxalate food. In this crossover, controlled trial we enrolled six healthy, non-stone …

The Sialyltransferase St6gal-I Promotes A Cancer Stem Cell Phenotype, Matthew Jonathan Schultz

All ETDs from UAB

Alterations in tumor cell glycosylation have been observed for decades, but the functional consequences of specific glycosyltransferase activity are not well understood. This dissertation focuses on the role of the sialyltransferase ST6Gal-I in driving ovarian and pancreatic cancer development. ST6Gal-I adds a negatively-charged sialic acid sugar in an alpha 2-6 linkage to select receptors, which can alter their function. We show that ST6Gal-I protein is upregulated in ovarian and pancreatic cancers but not expressed in normal epithelial tissue from these organs. ST6Gal-I expression in ovarian cancer correlates with decreased progression-free and overall survival, and we present evidence that ST6Gal-I expression …

Mpa Graduates: The Role Of Public And Nonprofit Managers In Public Service, Jasmine Traneil Shaw

All ETDs from UAB

Public sector employment has been the saving grace for American households throughout the tests of time. Exploration into the stability of the workforce and its resulting impact on the economy is essential to determining whether the benefits of working in the public sector outweigh the costs. A sample of 435 MPA alumni were asked to complete a survey designed to evaluate their career as it relates to variables such as job securement, salary, family life, and career advancement. Survey results provided evidence that MPA graduates find jobs in a reasonable amount of time and their salary allows their lifestyle to …

A Study Of The Relationship Between Nasion Perpendicular And The True Vertical Line, Jeffrey Shelley

All ETDs from UAB

A STUDY OF THE RELATIONSHIP BETWEEN NASION PERPENDICULAR AND THE TRUE VERTICAL LINE JEFFREY ALBERT SHELLEY JR. DEPARTMENT OF ORTHODONTICS ABSTRACT The purpose of this study is to assess the relationship between Nasion perpendicular and the true vertical line between patient groups using cephalometric analysis. Materials and Methods: Ninety-six adolescent patients comprised the sample for this study. Subjects were between 10 and 18 years old, with no major craniofacial deformity. Three groups of patients were divided in to three groups (Class I, Class II and Class III) based on their skeletal antero-posterior relationship. Pre-treatment lateral cephalometric radiographs were taken with …

The Unfolded Protein Response And Calcium Dysregulation In Autosomal Dominant Retinitis Pigmentosa Animal Models., Vishal Madhukar Shinde

All ETDs from UAB

The photoreceptor cell death in autosomal dominant retinitis pigmentosa (ADRP) is associated with molecular changes that occur due to mutations in a specific gene. S334ter RHO and P23H RHO are two ADRP rat models expressing mutant rhodopsin. The unfolded protein response (UPR) is a cellular stress response involved in the pathophysiology of several retinal disorders including P23H RHO rats. Considering our previous findings, we started our investigation by examining the status of UPR in S334ter RHO rats. As UPR tightly regulates several signaling pathways, we further studied whether UPR activation in S334ter and P23H RHO retina is accompanied by the …

The Multifactorial Roles Of The Cytokines Il-21 And Il-22 In Mediating Host Defense Against Enteropathogenic Infection, Daniel James Silberger

All ETDs from UAB

Enteropathogenic strains of Escherichia coli are a major public health concern, causing diarrhea and mortality particularly among infants and children in developing countries. Citrobacter rodentium is a murine intestinal pathogen that models pathogenic E. coli infection. Both innate and adaptive immune cells contribute to the clearance of C. rodentium. In particular, B cells and CD4+ T cells but not CD8+ T cells are required for protection during a primary infection with C. rodentium. In addition, T cell-dependent antibody responses are required for clearance. Th17 cells are a major CD4+ T cell population that accumulates in the large intestine during C. …

Computational Modelling And Surface Charachterization Of Interface In Polymer Composites By Atomic Force Microscopy, Daljeet Kumar Singh

All ETDs from UAB

Polymer composites are used in numerous industries due to their high specific strength and high specific stiffness. Such composites have markedly different properties than both the reinforcement and the matrix. Of the several factors which govern the final property of the composite, the interface is the single most factor that influences the stress transfer mechanism from the fiber to the matrix. The interface bond strength is also influenced by the surface treatments applied to the fiber during spinning and weaving. The present study is an effort to characterize and model the fiber-matrix interface in polymer matrix composites. Finite element models …

Personalized Contact Strategies And Predictors Of Time To Survey Completion: Analysis Of Two Sequential Randomized Trials, Victor D. Dinglas, Minxuan Huang, Kristin A. Sepulveda, Mariela Pinedo, Ramona O. Hopkins, Elizabeth Colantuoni, Dale M. Needham

Faculty Publications

Background

Effective strategies for contacting and recruiting study participants are critical in conducting clinical research. In this study, we conducted two sequential randomized controlled trials of mail- and telephone-based strategies for contacting and recruiting participants, and evaluated participant-related variables’ association with time to survey completion and survey completion rates. Subjects eligible for this study were survivors of acute lung injury who had been previously enrolled in a 12-month observational follow-up study evaluating their physical, cognitive and mental health outcomes, with their last study visit completed at a median of 34 months previously.

Methods

Eligible subjects were contacted to complete a …

Coordination And Sustainability Of River Observing Activities In The Arctic, James W. Mcclelland, Suzanne E. Tank, Robert G. M. Spencer, Alexander I. Shiklomanov

Faculty Publications

To understand and respond to changes in the world’s northern regions, we need a coordinated system of long-term Arctic observations. River networks naturally integrate across landscapes and link the terrestrial and ocean domains. Changes in river discharge reflect changes in the terrestrial water balance, whereas changes in water chemistry are linked to changes in biogeochemical processes and water flow paths. Sustained measurements of river water discharge and water chemistry are therefore essential components of an Arctic observing network. As we strive to establish and sustain long-term observations in the Arctic, these two measurements must be coupled. Although river discharge and …

Compatibility Of The Parasitoid Spalangia Endius (Hymenoptera: Pteromalidae) And Insecticides Against Musca Domestica (Diptera: Muscidae) As Evaluated By A New Index., Edwin R. Burgess, Bethia H. King

Faculty Articles, Papers, and Other Scholarship

Various insecticides for the control of the house fly Musca domestica L. were tested for compatibility with a biological control agent, the pupal parasitoid Spalangia endius Walker. Bioassays used the mode in which each organism was expected to be harmed by the insecticides, a surface contact bioassay for S. endius and a feeding bioassay for M. domestica. A Pesticide Compatibility Index (PCI) was created that allows comparison of LC50 values when the mode of exposure to a pesticide differs. First LC50 values were converted into units of prescribed dosages (LPR = LC50-to-prescribed dosage ratio). This study used dosages from labels …

Metazoan Parasites Of Antarctic Fishes, Mehmet Cemal Oğuz, Yahya Tepe, Mark C. Belk, Richard A. Heckmann, Burçak Aslan, Meryem Gürgen, Rodney A. Bray, Ülker Akgül

Faculty Publications

To date, there have been nearly 100 papers published on metazoan parasites of Antarctic fishes, but there has not yet been any compilation of a species list of fish parasites for this large geographic area. Herein, we provide a list of all documented occurrences of monogenean, cestode, digenean, acanthocephalan, nematode, and hirudinean parasites of Antarctic fishes. The list includes nearly 250 parasite species found in 142 species of host fishes. It is likely that there are more species of fish parasites, which are yet to be documented from Antarctic waters.

Bioethanol: Feedstock Alternatives, Pretreatments,Lignin Chemistry, And The Potential For Green Value-Added Lignin Co-Products, Ruben Michael Ceballos, N. A. Batchenkova, M.K. Y. Chan, A. X. Duffing-Romero, A. E. Nelson, S. Man

Biological Sciences Faculty Publications and Presentations

Major challenges still exist in the cost-competitive production of cellulosic ethanol. Lignocellulose deconstruction using physiochemical pretreatments continues to be the most efficient way to remove lignin and expose cellulose for enzyme-mediated sugar reduction. Recent interest in the development of “value-added” lignin co-products and the desire to reduce the use of hazardous materials has prompted a resurgence of interest in alternative lignocellulosic feedstock and research into environment-friendly biological pretreatments. This article provides an overview of bioethanol processes and economics, standard and alternative feedstocks, physiochemical and biological pretreatments, and lignin chemistry. The chemistry and mode of action of ligninolytic and cellulolytic enzymes …

Comparison Of Gut Microbiomes In Laboratory Cultured Sea Urchins Revealing Selective Attributes Of Microbial Composition Based Upon Their Feed And Surroundings, Joseph Antoine Hakim

All ETDs from UAB

Bacteria residing in the gastrointestinal tract play important roles in digestive physiology and host health. The advent of NextGen sequencing and bioinformatics has made it possible to establish taxonomic profiles with highest coverage, and map these microbes in the gut ecosystem. Although extensively studied in the context of human health, understanding the microbial profiles associated with other organisms will elucidate the roles of the microbial inhabitants to their respective hosts and environment. The microbes of the sea urchin gut have been linked to digestion, processing, and extraction of nutrients from ingesta while within the gut, and have also been implicated …

Obesity Weighs Down Memory: Emerging Insights Into The Epigentic Basis Of Obesity-Induced Memory Impairment In Adult Mice, Frankie Darryn Heyward

All ETDs from UAB

A preponderance of evidence has established that obesity contributes to memory impairments in mid-age adults. Empirical evidence has revealed that diet-induced obesity contributes to memory impairments in adult rodents. Precisely how obesity disrupts memory remains an open question. Bourgeoning data indicate that molecular epigenetic mechanisms mediate the changes in gene transcription that are necessary for hippocampus-dependent memory consolidation. Epigenetic mechanisms, such as DNA methylation, stably regulate gene expression without affecting the DNA sequence. Moreover, DNA methylation of memory-related genes with in the hippocampus is indispensible for memory formation. There is recent evidence of obesity-induced aberrantions in DNA methylation both peripherally …

Statistical Methodology To Improve The Understanding Of Dna Methylation Data, Lindsay Leigh Waite Jones

All ETDs from UAB

The study of epigenetics involves the investigation of genomic elements that do not directly affect DNA sequence but are stable and preserved during cell division. One of the most commonly studied epigenetic elements is DNA methylation, which occurs when a methyl group is added to a cytosine residue in the DNA sequence. The advancement of technology to quantify DNA methylation, including bisulfite sequencing and bisulfite microarrays, has led to a large amount of available data. However, many questions still remain as to how to statistically analyze this data. This dissertation addresses some statistical concerns related to the analysis of DNA …

Octocoral Mitochondrial Genomes Provide Insights Into The Phylogenetic History Of Gene Order Rearrangements, Order Reversals, And Cnidarian Phylogenetics, Diego F. Figueroa, Amy R. Baco

School of Earth, Environmental, & Marine Sciences Faculty Publications

We use full mitochondrial genomes to test the robustness of the phylogeny of the Octocorallia, to determine the evolutionary pathway for the five known mitochondrial gene rearrangements in octocorals, and to test the suitability of using mitochondrial genomes for higher taxonomic-level phylogenetic reconstructions. Our phylogeny supports three major divisions within the Octocorallia and show that Paragorgiidae is paraphyletic, with Sibogagorgia forming a sister branch to the Coralliidae. Furthermore, Sibogagorgia cauliflora has what is presumed to be the ancestral gene order in octocorals, but the presence of a pair of inverted repeat sequences suggest that this gene order was not conserved …

Robust Production Of Mature Ribosomal Rna Is Directly Influenced By Multiple Steps Within The Transcription Cycle, Krysta Engel

All ETDs from UAB

Cellular growth depends on the capacity for protein synthesis, and likewise ribosome biogenesis. Therefore, robust rRNA synthesis by RNA Polymerase I (Pol I) is a critical component of cell growth. The work reported in this dissertation highlights the contribution of polymerase domains and trans-acting proteins during rRNA synthesis and ribosome biogenesis. Eukaryotes utilize three homologous nuclear RNA polymerases (RNAPs) to express their genomes. The trigger loop (TL) is a well conserved region within the active site of multi-subunit RNAPs that plays a direct role during the nucleotide addition cycle. Analysis of Pol II TL mutants has suggested that catalysis is …

Assessment Of Student-Created Videos As An Alternate Laboratory Assignment And Design And Implementation Of Classroom Activities Designed To Improve Student Retention And Learning, Mitzy Ann Erdmann

All ETDs from UAB

This dissertation presents three educationally based research projects and describes how they are related. The first portion of this manuscript describes the development of an alternate assessment for the general chemistry laboratory that harnessed both the availability of and interest in using smart phone technology in an educational setting. Student-created technique videos were implemented into the general chemistry laboratory curriculum in order to asynchronously monitor student use of standard laboratory equipment. A feasibility study was performed first, which showed that students were able to create videos that showed themselves performing standard laboratory techniques. Teaching assistants reported being able to easily …

Metabolic And Oxidative Regulation Of Neuronal Autophagy And Survival, Matthew Dodson

All ETDs from UAB

Neurodegenerative diseases, such as Parkinson's disease, Alzheimer's disease and Huntington's disease are all characterized by metabolic dysfunction, increased oxidative damage to proteins and organelles, formation of proteinaceous inclusions, decreased autophagic and proteasomal function, and eventual neuronal and glial cell death. While our understanding of the mechanisms that underlie many of these pathologies is constantly growing, their exact cause, onset, interplay and progression still remain unclear. The gap between the description of disease pathologies and understanding the fundamental mechanisms of disease pathogenesis, progression and potential therapeutics to mitigate disease progression is still large. Based on the observation that altered glucose utilization, …

The Characterization Of Human Cytosolic Sulfotransferase 1a1: Interactions With 17Α-Ethinylestradiol, Katie Jo Glowacki

All ETDs from UAB

Human cytosolic sulfotransferases (SULTs) are a family of Phase II conjugating enzymes that facilitate the transfer of a sulfonate moiety from 3’phosphoadenosine 5’phosphosulfate (PAPS) to hydroxyl or amine groups of acceptor substrates. SULT1A1, located in many tissues throughout the human body including the liver, is important in the metabolism of many endogenous, exogenous, xenobiotic, and drug compounds. The majority of substrates for SULT1A1 are small neutral phenols including 1-naphthol and acetaminophen; however, SULT1A1 sulfates larger compounds including 17β-estradiol (E2) and raloxifene. SULT1A1 conjugates E2 with a Km of 2.3 µM and the structure of E2 is almost identical to the …

Probing Astrocytes With Carbon Nanotubes And Assessing Their Effects On Astrocytic Structural And Functional Properties, Manoj K. Gottipati

All ETDs from UAB

Single-walled carbon nanotubes, chemically-functionalized with polyethylene glycol (SWCNT-PEG) have been shown to modulate the morphology and proliferation characteristics of astrocytes in culture, when applied to the cells as colloidal solutes or as films upon which the cells can attach and grow. These changes were associated with a change in the immunoreactivity of the astrocyte-specific protein, glial fibrillary acidic protein (GFAP); the solutes and films caused an increase and a decrease in GFAP levels, respectively. To assess if these morpho-functional changes induced by the SWCNT-PEG modalities are dependent on GFAP or if the changes in GFAP levels are independent events, I …

Emotion Regulation And Neuropathic Pain Following Spinal Cord Injury (Sci): Influence Of Emotional Processes On The Efficacy Of A Novel Treatment Paradigm For Sci-Related Pain, Juliette Galindo

All ETDs from UAB

While spinal cord injury (SCI) is a relatively rare in the general population, it has significant implications on functionality, independence, and quality of life for individuals who are affected by it. Common sequelae of SCI include sensorimotor dysfunction and pain symptoms that are often severe. More specifically, approximately 33% of individuals with SCI experience severe, intractable neuropathic pain. Additionally, treatments for neuropathic pain have variable efficacy and/or many side effects. While SCI-related neuropathic pain is thought to be related to cortical reorganization and nerve damage, there may be psychological factors that contribute to increased pain severity and variable treatment response. …

Bioenergetics As A Biomarker Of Health And Disease, Philip Kramer

All ETDs from UAB

The increasing prevalence of metabolic syndrome, diabetes, atherosclerosis, and many other diseases only recently associated with aberrant metabolism, have led to a de-mand for clinical assays to determine a patient’s mitochondrial health. With the rapidly growing interest in personalized medicine, such an assay would ideally be able to capture the metabolic changes associated with oxidative stress, inflammation, and therapy of a patient in a swift and non-invasive manner. Short of tissue biopsies, this burgeoning field of Translational Bioenergetics has had minimal success in obtaining sufficient human cells and the means to assess them both accurately and swiftly. The purpose of …

Defining The Role Of Trps1 In Phosphate Mediated Mineralization, Maria Kuzynski

All ETDs from UAB

Mineralization is a tightly controlled bi-phasic process that occurs when crystals of calcium and phosphate (Pi) are laid down within the extracellular matrix. However, the molecular networks regulating the initiation and progression of this process have not been well characterized. Pi, as one of the components of mineral crystals and a signaling molecule that regulates expression of mineralization-related genes, is essential to the mineralization process. In our studies, we discovered a novel function for Pi in this process: Pi is sufficient to induce secretion of matrix vesicles, which support the initiation of mineralization. Furthermore, we determined that this induction is …