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2014

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Kinetic And Structural Characterization Of Tunnel-Perturbing Mutants In Bradyrhizobium Japonicum Proline Utilization A, Benjamin W. Arentson, Min Luo, Travis A. Pemberton, John J. Tanner, Donald F. Becker Jan 2014

Kinetic And Structural Characterization Of Tunnel-Perturbing Mutants In Bradyrhizobium Japonicum Proline Utilization A, Benjamin W. Arentson, Min Luo, Travis A. Pemberton, John J. Tanner, Donald F. Becker

Department of Biochemistry: Faculty Publications

Proline utilization A from Bradyrhizobium japonicum (BjPutA) is a bifunctional flavoenzyme that catalyzes the oxidation of proline to glutamate using fused proline dehydrogenase (PRODH) and Δ1-pyrroline-5-carboxylate dehydrogenase (P5CDH) domains. Recent crystal structures and kinetic data suggest an intramolecular channel connects the two active sites, promoting substrate channeling of the intermediate Δ1-pyrroline-5-carboxylate/glutamate-γ-semialdehyde (P5C/GSA). In this work, the structure of the channel was explored by inserting large side chain residues at four positions along the channel in BjPutA. Kinetic analysis of the different mutants revealed replacement of D779 with Tyr (D779Y) or Trp (D779W) significantly decreased the overall …


Evidence That The C‑Terminal Domain Of A Type B Puta Protein Contributes To Aldehyde Dehydrogenase Activity And Substrate Channeling, Min Luo, Shelbi Christgen, Nikhilesh Sanyal, Benjamin W. Arentson, Donald F. Becker, John J. Tanner Jan 2014

Evidence That The C‑Terminal Domain Of A Type B Puta Protein Contributes To Aldehyde Dehydrogenase Activity And Substrate Channeling, Min Luo, Shelbi Christgen, Nikhilesh Sanyal, Benjamin W. Arentson, Donald F. Becker, John J. Tanner

Department of Biochemistry: Faculty Publications

Proline utilization A (PutA) is a bifunctional enzyme that catalyzes the oxidation of proline to glutamate. Structures of type A PutAs have revealed the catalytic core consisting of proline dehydrogenase (PRODH) and Δ1- pyrroline-5-carboxylate dehydrogenase (P5CDH) modules connected by a substrate-channeling tunnel. Type B PutAs also have a C-terminal domain of unknown function (CTDUF) that is absent in type A PutAs. Small-angle X-ray scattering (SAXS), mutagenesis, and kinetics are used to determine the contributions of this domain to PutA structure and function. The 1127-residue Rhodobacter capsulatus PutA (RcPutA) is used as a representative CTDUF-containing type B PutA. The reaction progress …


Homogeneous Low-Molecular-Weight Heparins With Reversible Anticoagulant Activity, Yongmei Xu, Chao Cai, Kasemsiri Chandarajoti, Po-Hung Hsieh, Lingyun Li, Truong Q. Pham, Erica M. Sparkenbaugh, Juzheng Sheng, Nigel S. Key, Rafal Pawlinski, Edward N. Harris, Robert J. Linhardt, Jian Liu Jan 2014

Homogeneous Low-Molecular-Weight Heparins With Reversible Anticoagulant Activity, Yongmei Xu, Chao Cai, Kasemsiri Chandarajoti, Po-Hung Hsieh, Lingyun Li, Truong Q. Pham, Erica M. Sparkenbaugh, Juzheng Sheng, Nigel S. Key, Rafal Pawlinski, Edward N. Harris, Robert J. Linhardt, Jian Liu

Department of Biochemistry: Faculty Publications

Low-molecular-weight heparins (LMWHs) are carbohydrate-based anticoagulants clinically used to treat thrombotic disorders, but impurities, structural heterogeneity or functional irreversibility can limit treatment options. We report a series of synthetic LMWHs prepared by cost-effective chemoenzymatic methods. The high activity of one defined synthetic LMWH against human factor Xa (FXa) was reversible in vitro and in vivo using protamine, demonstrating that synthetically accessible constructs can have a critical role in the next generation of LMWHs.


Loss Of Sirt1 Function Improves Intestinal Anti-Bacterial Defense And Protects From Colitis-Induced Colorectal Cancer, Giuseppe Lo Sasso, Dongryeol Ryu, Laurent Mouchiroud, Samodha C. Fernando, Christopher L. Anderson, Elena Katsyuba, Alessandra Piersigilli, Michael O. Hottiger, Kristina Schoonjans, Johan Auwerx Jan 2014

Loss Of Sirt1 Function Improves Intestinal Anti-Bacterial Defense And Protects From Colitis-Induced Colorectal Cancer, Giuseppe Lo Sasso, Dongryeol Ryu, Laurent Mouchiroud, Samodha C. Fernando, Christopher L. Anderson, Elena Katsyuba, Alessandra Piersigilli, Michael O. Hottiger, Kristina Schoonjans, Johan Auwerx

School of Biological Sciences: Faculty Publications

Dysfunction of Paneth and goblet cells in the intestine contributes to inflammatory bowel disease (IBD) and colitisassociated colorectal cancer (CAC). Here, we report a role for the NAD+-dependent histone deacetylase SIRT1 in the control of anti-bacterial defense. Mice with an intestinal specific Sirt1 deficiency (Sirt1int-/-) have more Paneth and goblet cells with a consequent rearrangement of the gut microbiota. From a mechanistic point of view, the effects on mouse intestinal cell maturation are mediated by SIRT1-dependent changes in the acetylation status of SPDEF, a master regulator of Paneth and goblet cells. Our results suggest that targeting …


Genome-Wide Gene Expression Effects Of Sex Chromosome Imprinting In Drosophila, Bernardo Lemos, Alan T. Branco, Pan-Pan Jiang, Daniel L. Hartl, Colin D. Meiklejohn Jan 2014

Genome-Wide Gene Expression Effects Of Sex Chromosome Imprinting In Drosophila, Bernardo Lemos, Alan T. Branco, Pan-Pan Jiang, Daniel L. Hartl, Colin D. Meiklejohn

School of Biological Sciences: Faculty Publications

Imprinting is well-documented in both plant and animal species. In Drosophila, the Y chromosome is differently modified when transmitted through the male and female germlines. Here, we report genome-wide gene expression effects resulting from reversed parent-of-origin of the X and Y chromosomes. We found that hundreds of genes are differentially expressed between adult male Drosophila melanogaster that differ in the maternal and paternal origin of the sex chromosomes. Many of the differentially regulated genes are expressed specifically in testis and midgut cells, suggesting that sex chromosome imprinting might globally impact gene expression in these tissues. In contrast, we observed much …


Identification And Codon Reading Properties Of 5-Cyanomethyl Uridine, A New Modified Nucleoside Found In The Anticodon Wobble Position Of Mutant Haloarchaeal Isoleucine Trnas, Debabrata Mandal, Caroline Köhrer, Dan Su, Ramesh Babu, Clement T.Y. Chan, Yuchen Liu, Dieter Söll, Paul H. Blum, Masayasu Kuwahara, Peter C. Dedon, Uttam L. Rajbhandary Jan 2014

Identification And Codon Reading Properties Of 5-Cyanomethyl Uridine, A New Modified Nucleoside Found In The Anticodon Wobble Position Of Mutant Haloarchaeal Isoleucine Trnas, Debabrata Mandal, Caroline Köhrer, Dan Su, Ramesh Babu, Clement T.Y. Chan, Yuchen Liu, Dieter Söll, Paul H. Blum, Masayasu Kuwahara, Peter C. Dedon, Uttam L. Rajbhandary

School of Biological Sciences: Faculty Publications

Most archaea and bacteria use a modified C in the anticodon wobble position of isoleucine tRNA to base pair with A but not with G of the mRNA. This allows the tRNA to read the isoleucine codon AUA without also reading the methionine codon AUG. To understand why a modified C, and not U or modified U, is used to base pair with A, we mutated the C34 in the anticodon of Haloarcula marismortui isoleucine tRNA (tRNA2Ile) to U, expressed the mutant tRNA in Haloferax volcanii, and purified and analyzed the tRNA. Ribosome binding experiments show that …


An Assembly Of Proteins And Lipid Domains Regulates Transport Of Phosphatidylserine To Phosphatidylserine Decarboxylase 2 In Saccharomyces Cerevisiae, Wayne R. Riekhof, Wen-I Wu, Jennifer L. Jones, Mrinalini Nikrad, Mallory M. Chan, Christopher J. R. Loewen, Dennis R. Voelker Jan 2014

An Assembly Of Proteins And Lipid Domains Regulates Transport Of Phosphatidylserine To Phosphatidylserine Decarboxylase 2 In Saccharomyces Cerevisiae, Wayne R. Riekhof, Wen-I Wu, Jennifer L. Jones, Mrinalini Nikrad, Mallory M. Chan, Christopher J. R. Loewen, Dennis R. Voelker

School of Biological Sciences: Faculty Publications

Background: The machinery for interorganelle phosphatidylserine (PtdSer) transport is poorly defined at the molecular level.

Results: Molecular interaction studies identify specific protein-protein and protein-lipid interactions in PtdSer transport.

Conclusion: A protein and lipid interaction network defines key participants in PS transport to the locus of PtdSer-decarboxylase 2.

Significance: This study identifies important molecular participants involved in non-vesicular phospholipid traffic.


Why American Higher Education Needs Parasitologists, John J. Janovy Jr. Jan 2014

Why American Higher Education Needs Parasitologists, John J. Janovy Jr.

John J. Janovy, Jr. Publications

Addresses four topics that characterize the discipline of parasitology and are largely missing from our national conversation in the United States about education, especially at the college and university level. Those topics are the production of transferable skills; our perceptions of the world, especially the natural world; access to reasonably difficult problems in natural settings; and intellectual epidemiology, or the movement of ideas, innovations, and cultural items through populations. These topics have been a part of the author's discussions with fellow parasitologists for at least half a century, beginning with his choice to pursue a graduate degree under the supervision …


Demographic Variation And Habitat Specialization Of Tree Species In A Diverse Tropical Forest Of Cameroon, David Kenfack, George B. Chuyong, Richard Condit, Sabrina E. Russo, Duncan W. Thomas Jan 2014

Demographic Variation And Habitat Specialization Of Tree Species In A Diverse Tropical Forest Of Cameroon, David Kenfack, George B. Chuyong, Richard Condit, Sabrina E. Russo, Duncan W. Thomas

School of Biological Sciences: Faculty Publications

Background: Many tree species in tropical forests have distributions tracking local ridge-slope-valley topography. Previous work in a 50-ha plot in Korup National Park, Cameroon, demonstrated that 272 species, or 63% of those tested, were significantly associated with topography.

Methods: We used two censuses of 329,000 trees ≥1 cm dbh to examine demographic variation at this site that would account for those observed habitat preferences. We tested two predictions. First, within a given topographic habitat, species specializing on that habitat (‘residents’) should outperform species that are specialists of other habitats (‘foreigners’). Second, across different topographic habitats, species should perform best …


Effect Of Prey Richness On A Consumer’S Intrinsic Growth Rate, Brian J. Darby, Michael A. Herman Jan 2014

Effect Of Prey Richness On A Consumer’S Intrinsic Growth Rate, Brian J. Darby, Michael A. Herman

School of Biological Sciences: Faculty Publications

The intrinsic growth rate of nonselective microbivores increases asymptotically with increasing prey biomass, but we do not know how intrinsic growth rate is affected by prey richness. The objective of this experiment was to determine the effect of prey richness on the growth kinetics of nematode predators while grazing on mixed bacterial lawns. We found that the intrinsic growth rate of Caenorhabditis elegans in laboratory culture increased asymptotically with prey richness. The mechanism of this pattern was primarily due to the best available prey species in the mixture: the intrinsic growth rate of the consumer feeding on a mixture of …


Serial Cervicovaginal Exposures With Replication-Deficient Sivsm Induce Higher Dendritic Cell (Pdc) And Cd4+ T-Cell Infiltrates Not Associated With Prevention But A More Severe Sivmac251 Infection Of Rhesus Macaques, Shaheed A. Abdulhaqq, Melween I. Martinez, Guobin Kang, Andrea S. Foulkes, Idia V. Rodriguez, Stephanie M. Nichols, Meredith Hunter, Carlos A. Sariol, Lynnette A. Ruiz, Brian N. Ross, Xiangfan Yin, David W. Speicher, Ashley T. Haase, Preston A. Marx, Qingsheng Li, Edmundo N. Kraiselburd, Luis J. Montaner Jan 2014

Serial Cervicovaginal Exposures With Replication-Deficient Sivsm Induce Higher Dendritic Cell (Pdc) And Cd4+ T-Cell Infiltrates Not Associated With Prevention But A More Severe Sivmac251 Infection Of Rhesus Macaques, Shaheed A. Abdulhaqq, Melween I. Martinez, Guobin Kang, Andrea S. Foulkes, Idia V. Rodriguez, Stephanie M. Nichols, Meredith Hunter, Carlos A. Sariol, Lynnette A. Ruiz, Brian N. Ross, Xiangfan Yin, David W. Speicher, Ashley T. Haase, Preston A. Marx, Qingsheng Li, Edmundo N. Kraiselburd, Luis J. Montaner

Qingsheng Li Publications

Objective: Intravaginal exposure to simian immunodeficiency virus (SIV) acutely recruits interferon-alpha (IFN-α) producing plasmacytoid dendritic cells (pDC) and CD4+ T-lymphocyte tar-gets to the endocervix of nonhuman primates. We tested the impact of repeated cervicovaginal ex-posures to noninfectious, defective SIV particles over 72 hours on a subsequent cervicovaginal challenge with replication competent SIV. Methods: Thirty-four female Indian Rhesus macaques were given a 3-day twice-daily vaginal exposures to either SIVsmB7, a replication deficient derivative of SIVsmH3 produced by a T lymphoblast CEMx174 cell clone (n = 16), or to CEM supernatant controls (n = 18). On the fourth day, animals were either …


Repeated Evolution Of Chimeric Fusion Genes In The Β-Globin Gene Family Of Laurasiatherian Mammals, Michael J. Gaudry, Jay F. Storz, Gary Tyler Butts, Kevin L. Campbell, Federico G. Hoffmann Jan 2014

Repeated Evolution Of Chimeric Fusion Genes In The Β-Globin Gene Family Of Laurasiatherian Mammals, Michael J. Gaudry, Jay F. Storz, Gary Tyler Butts, Kevin L. Campbell, Federico G. Hoffmann

Jay F. Storz Publications

The evolutionary fate of chimeric fusion genes may be strongly influenced by their recombinational mode of origin and the nature of functional divergence between the parental genes. In the β-globin gene family of placental mammals, the two postnatally expressed δ- and β-globin genes (HBD and HBB, respectively) have a propensity for recombinational exchange via gene conversion and unequal crossing-over. In the latter case, there are good reasons to expect differences in retention rates for the reciprocal HBB/HBD and HBD/ HBB fusion genes due to thalassemia pathologies associated with the HBD/HBB “Lepore” deletion mutant in humans.Here,were port a comparative …


Effects Of Virus On Plant Fecundity And Population Dynamics, Holly R. Prendeville, Brigitte Tenhumberg, Diana Pilson Jan 2014

Effects Of Virus On Plant Fecundity And Population Dynamics, Holly R. Prendeville, Brigitte Tenhumberg, Diana Pilson

Brigitte Tenhumberg Papers

Microorganisms are ubiquitous and thought to regulate host populations. Although microorganisms can be pathogenic and affect components of fitness, few studies have examined their effects on wild plant populations. As individual traits might not contribute equally to changes in population growth rate, it is essential to examine the entire life cycle to determine how microorganisms affect host population dynamics. In this study, we used data from common garden experiments with plants from three Cucurbita pepo populations exposed to three virus treatments. These data were used to parameterize a deterministic matrix model, which allowed us to estimate the effect of virus …


Redescription Of Oligacanthorhynchus Microcephalus (Rudolphi, 1819) Schmidt 1972 (Syn. Oligacanthorhynchus Tortuosa (Leidy, 1850) Schmidt 1972) (Acanthocephala: Oligacanthorhynchidae), Dennis J. Richardson, Scott Lyell Gardner, Jonathan W. Allen Jr. Jan 2014

Redescription Of Oligacanthorhynchus Microcephalus (Rudolphi, 1819) Schmidt 1972 (Syn. Oligacanthorhynchus Tortuosa (Leidy, 1850) Schmidt 1972) (Acanthocephala: Oligacanthorhynchidae), Dennis J. Richardson, Scott Lyell Gardner, Jonathan W. Allen Jr.

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Oligacanthorhynchus microcephalus (Rudolphi, 1819) Schmidt, 1972 was originally described from the philander opossum Caluromys philander from Brazil. Oligacanthorhynchus tortuosa (Leidy, 1850) Schmidt, 1972 was originally described from the Virginia opossum (Didelphis virginiana) in North America. Six years after describing O. tortuosa, Leidy indicated the synonomy of O. tortuosa with O. microcephalus. This taxonomic view persisted for decades until Van Cleave, in 1924, recognized the validity of O. tortuosa, apparently without examining the type material of O. microcephalus. Subsequent workers have recognized two species of Oligacanthorhynchus from New World opossums: O. microcephalus from South American …


Varestrongylus Eleguneniensis Sp. N. (Nematoda: Protostrongylidae): A Widespread, Multi-Host Lungworm Of Wild North American Ungulates, With An Emended Diagnosis For The Genus And Explorations Of Biogeography, Guilherme G. Verocai, Susan J. Kutz, Manon Simard, Eric P. Hoberg Jan 2014

Varestrongylus Eleguneniensis Sp. N. (Nematoda: Protostrongylidae): A Widespread, Multi-Host Lungworm Of Wild North American Ungulates, With An Emended Diagnosis For The Genus And Explorations Of Biogeography, Guilherme G. Verocai, Susan J. Kutz, Manon Simard, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Background: A putative new species of Varestrongylus has been recently recognized in wild North American ungulates based on the ITS-2 sequences of larvae isolated from feces during a wide geographic survey. No taxonomic description was provided, as adult specimens were not examined. Methods: Lungworm specimens were collected in the terminal bronchioles of muskoxen from Quebec, and a woodland caribou from central Alberta, Canada. The L3 stage was recovered from experimentally infected slugs (Deroceras spp.). Description of specimens was based on comparative morphology and integrated approaches. Molecular identity was determined by PCR and sequencing of the ITS-2 region of …


Air Sac Nematode Monopetalonema Alcedinis In A Belted Kingfisher (Megaceryle Alcyon) In Maryland, Usa, Ellen Bronson, Kathleen Kelly, Eric P. Hoberg Jan 2014

Air Sac Nematode Monopetalonema Alcedinis In A Belted Kingfisher (Megaceryle Alcyon) In Maryland, Usa, Ellen Bronson, Kathleen Kelly, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Sporadic and geographically widespread reports of parasites affecting the Belted Kingfisher (Megaceryle alcyon) have been published but few have described details of the pathology. A female, adult kingfisher was found dead in a heavily wooded area of a zoo in Maryland, USA. At necropsy, numerous sexually dimorphic, 4.4–40.5-cm adult Monopetalonema alcedinis nematodes were found tightly wound within the coelomic cavity between organs and completely filling the caudal thoracic and abdominal air sacs. Abundant, 30–60-mm diameter, larvated, thick-walled ova were found in the bronchi and parabronchi, within the mesentery, and in the serosa of multiple coelomic organs. Monopetalonema alcedinis …


In Memoriam: Robert Lloyd Rausch—A Life In Nature And Field Biology, 1921–2012, Eric P. Hoberg Jan 2014

In Memoriam: Robert Lloyd Rausch—A Life In Nature And Field Biology, 1921–2012, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

During his distinguished career, Robert Rausch, a man of great integrity and principles, served in his lifetime as a singular ambassador for parasitology in a broad international arena. Robert was a friend to many, was honored to be considered an equal among the nomadic bands of Nunamiut traversing the Brooks Range 60 years ago, and will be long remembered for the strength of his science and his perceptive views of the natural world.


Finding Them Before They Find Us: Informatics, Parasites, And Environments In Accelerating Climate Change, Daniel R. Brooks, Eric P. Hoberg, Walter A. Boeger, Scott Lyell Gardner, Kurt E. Galbreath, David Herczeg, Hugo H. Mejía-Madrid, S. Elizabeth Rácz, Altangerel Tsogtsaikhan Dursahinhan Jan 2014

Finding Them Before They Find Us: Informatics, Parasites, And Environments In Accelerating Climate Change, Daniel R. Brooks, Eric P. Hoberg, Walter A. Boeger, Scott Lyell Gardner, Kurt E. Galbreath, David Herczeg, Hugo H. Mejía-Madrid, S. Elizabeth Rácz, Altangerel Tsogtsaikhan Dursahinhan

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Parasites are agents of disease in humans, livestock, crops, and wildlife and are powerful representations of the ecological and historical context of the diseases they cause. Recognizing a nexus of professional opportunities and global public need, we gathered at the Cedar Point Biological Station of the University of Nebraska in September 2012 to formulate a cooperative and broad platform for providing essential information about the evolution, ecology, and epidemiology of parasites across host groups, parasite groups, geographical regions, and ecosystem types. A general protocol, documentation–assessment–monitoring–action (DAMA), suggests an integrated proposal to build a proactive capacity to understand, anticipate, and respond …


Transfer Of The U.S. National Parasite Collection [Announcement], Eric P. Hoberg, Anna J.. Phillips Jan 2014

Transfer Of The U.S. National Parasite Collection [Announcement], Eric P. Hoberg, Anna J.. Phillips

Harold W. Manter Laboratory of Parasitology: Faculty Publications

In 2013, an agreement was articulated between the United States Department of Agriculture/Agricultural Research Service (ARS) and the Smithsonian Institution to transfer the National Parasite Collection (NPC) in its entirety (fluid specimens, slide specimens, frozen tissues, and reprints) to the National Museum of Natural History (NMNH) in Washington, D.C. Current collections staff, including senior curator Dr. Eric P. Hoberg and support scientists/managers from the ARS, will be transferred with the collection and, with adjunct appointments in the NMNH, will provide continuity and assistance for curation and accessibility during and after the relocation. New curatorial controls will be established under NMNH …


Transfer Of The United States National Parasite Collection [Announcement], Eric P. Hoberg, Anna J. Phillips Jan 2014

Transfer Of The United States National Parasite Collection [Announcement], Eric P. Hoberg, Anna J. Phillips

Harold W. Manter Laboratory of Parasitology: Faculty Publications

In 2013, an agreement was articulated between the United States Department of Agriculture/Agricultural Research Service (ARS) and the Smithsonian Institution to transfer the United States National Parasite Collection in its entirety (fluid specimens, slide specimens, frozen tissues and reprints) to the National Museum of Natural History (NMNH) in Washington, D.C. Current collections staff, including senior curator Dr. Eric P. Hoberg and support scientists/managers from the ARS will be transferred with the collection and with adjunct appointments in the NMNH will provide continuity and assistance for curation and accessibility during and after the relocation. New curatorial controls will be established under …


Anthropogenics: Human Influence On Global And Genetic Homogenization Of Parasite Populations, Dante S. Zarlenga, Eric P. Hoberg, Benjamin Rosenthal, Simonetti Mattiucci, Giuseppe Nascetti Jan 2014

Anthropogenics: Human Influence On Global And Genetic Homogenization Of Parasite Populations, Dante S. Zarlenga, Eric P. Hoberg, Benjamin Rosenthal, Simonetti Mattiucci, Giuseppe Nascetti

Harold W. Manter Laboratory of Parasitology: Faculty Publications

The distribution, abundance, and diversity of life on Earth have been greatly shaped by human activities. This includes the geographic expansion of parasites; however, measuring the extent to which humans have influenced the dissemination and population structure of parasites has been challenging. In-depth comparisons among parasite populations extending to landscape-level processes affecting disease emergence have remained elusive. New research methods have enhanced our capacity to discern human impact, where the tools of population genetics and molecular epidemiology have begun to shed light on our historical and ongoing influence. Only since the 1990s have parasitologists coupled morphological diagnosis, long considered the …


Landsat-8: Science And Product Vision For Terrestrial Global Change Research, D. P. Roy, M. A. Wulder, T. R. Loveland, C. E. Woodcock, R. G. Allen, M. C. Anderson, D. Helder, J. R. Irons, D. M. Johnson, R. Kennedy, T. A. Scambos, C. B. Schaaf, J. R. Schott, Y. Sheng, E. F. Vermote, A. S. Belward, R. Bindschadler, W. B. Cohen, F. Gao, J. D. Hipple, P. Hostert, J. Huntington, C. O. Justice, Ayse Kilic, V. Kovalskyy, Z. P. Lee, L. Lymburner, J. G. Masek, J. Mccorkel, Y. Shuai, R. Trezza, J. Vogelmann, R. H. Wynne, Z. Zhu Jan 2014

Landsat-8: Science And Product Vision For Terrestrial Global Change Research, D. P. Roy, M. A. Wulder, T. R. Loveland, C. E. Woodcock, R. G. Allen, M. C. Anderson, D. Helder, J. R. Irons, D. M. Johnson, R. Kennedy, T. A. Scambos, C. B. Schaaf, J. R. Schott, Y. Sheng, E. F. Vermote, A. S. Belward, R. Bindschadler, W. B. Cohen, F. Gao, J. D. Hipple, P. Hostert, J. Huntington, C. O. Justice, Ayse Kilic, V. Kovalskyy, Z. P. Lee, L. Lymburner, J. G. Masek, J. Mccorkel, Y. Shuai, R. Trezza, J. Vogelmann, R. H. Wynne, Z. Zhu

Department of Civil and Environmental Engineering: Faculty Publications

Landsat 8, a NASA and USGS collaboration, acquires global moderate-resolution measurements of the Earth's terrestrial and polar regions in the visible, near-infrared, short wave, and thermal infrared. Landsat 8 extends the remarkable 40 year Landsat record and has enhanced capabilities including new spectral bands in the blue and cirrus cloud-detection portion of the spectrum, twothermal bands, improved sensor signal-to-noise performance and associated improvements in radiometric resolution, and an improved duty cycle that allows collection of a significantly greater number of images per day. This paper introduces the current (2012–2017) Landsat Science Team's efforts to establish an initial understanding of Landsat …


Synthesis Of Unnatural Amino Acids Functionalized With Sterically Shielded Pyrroline Nitroxides, Ying Wang, Joseph T. Paletta, Kathleen Berg, Erin Reinhart, Suchada Rajca, Andrzej Rajca Jan 2014

Synthesis Of Unnatural Amino Acids Functionalized With Sterically Shielded Pyrroline Nitroxides, Ying Wang, Joseph T. Paletta, Kathleen Berg, Erin Reinhart, Suchada Rajca, Andrzej Rajca

Andrzej Rajca Publications

A series of unnatural amino acids functionalized with sterically shielded pyrroline nitroxides were synthesized. Their reduction by ascorbate/glutathione indicates that Lcysteine functionalized with gem-diethylpyrroline nitroxide is reduced at the slowest rate and is comparable to that measured for the most resistant to reduction pyrroline and pyrrolidine nitroxides.


Mvapack: A Complete Data Handling Package For Nmr Metabolomics, Bradley Worley, Robert Powers Jan 2014

Mvapack: A Complete Data Handling Package For Nmr Metabolomics, Bradley Worley, Robert Powers

Robert Powers Publications

Data handling in the field of NMR metabolomics has historically been reliant on either in-house mathematical routines or long chains of expensive commercial software. Thus, while the relatively simple biochemical protocols of metabolomics maintain a low barrier to entry, new practitioners of metabolomics experiments are forced to either purchase expensive software packages or craft their own data handling solutions from scratch. This inevitably complicates the standardization and communication of data handling protocols in the field. We report a newly developed open-source platform for complete NMR metabolomics data handling, MVAPACK, and describe its application on an example metabolic fingerprinting data set.


Alterations In Energy/Redox Metabolism Induced By Mitochondrial And Environmental Toxins: A Specific Role For Glucose-6-Phosphate- Dehydrogenase And The Pentose Phosphate Pathway In Paraquat Toxicity, Shulei Lei, Laura Zavala- Flores, Aracely Garcia- Garcia, Renu Nandakumar, Yuting Huang, Nandakumar Madayiputhiya, Robert C. Stanton, Eric D. Dodds, Robert Powers, Rodrigo Franco Jan 2014

Alterations In Energy/Redox Metabolism Induced By Mitochondrial And Environmental Toxins: A Specific Role For Glucose-6-Phosphate- Dehydrogenase And The Pentose Phosphate Pathway In Paraquat Toxicity, Shulei Lei, Laura Zavala- Flores, Aracely Garcia- Garcia, Renu Nandakumar, Yuting Huang, Nandakumar Madayiputhiya, Robert C. Stanton, Eric D. Dodds, Robert Powers, Rodrigo Franco

Robert Powers Publications

Parkinson’s disease (PD) is a multifactorial disorder with a complex etiology including genetic risk factors, environmental exposures, and aging. While energy failure and oxidative stress have largely been associated with the loss of dopaminergic cells in PD and the toxicity induced by mitochondrial/environmental toxins, very little is known regarding the alterations in energy metabolism associated with mitochondrial dysfunction and their causative role in cell death progression. In this study, we investigated the alterations in the energy/redox-metabolome in dopaminergic cells exposed to environmental/ mitochondrial toxins (paraquat, rotenone, 1-methyl-4-phenylpyridinium [MPP+], and 6-hydroxydopamine [6-OHDA]) in order to identify common and/or different …


Structure And Function Of Human Dnaj Homologue Subfamily A Member 1 (Dnaja1) And Its Relationship To Pancreatic Cancer, Jaime L. Stark, Kamiya Mehla, Nina V. Chaika, Thomas B. Acton, Rong Xiao, Pankaj K. Singh, Gaetano T. Montelione, Robert Powers Jan 2014

Structure And Function Of Human Dnaj Homologue Subfamily A Member 1 (Dnaja1) And Its Relationship To Pancreatic Cancer, Jaime L. Stark, Kamiya Mehla, Nina V. Chaika, Thomas B. Acton, Rong Xiao, Pankaj K. Singh, Gaetano T. Montelione, Robert Powers

Robert Powers Publications

Pancreatic cancer has a dismal 5 year survival rate of 5.5% that has not been improved over the past 25 years despite an enormous amount of effort. Thus, there is an urgent need to identify truly novel yet druggable protein targets for drug discovery. The human protein DnaJ homologue subfamily A member 1 (DNAJA1) was previously shown to be downregulated 5- fold in pancreatic cancer cells and has been targeted as a biomarker for pancreatic cancer, but little is known about the specific biological function for DNAJA1 or the other members of the DnaJ family encoded in the human genome. …


Identification Of Low Molecular Weight Compounds Inhibiting Growth Of Corynebacteria: Potential Lead Compounds For Antibiotics, Jaime L. Stark, Jennifer C. Copeland, Alexander Eletsky, Greg A. Somerville, Thomas Szyperski, Robert Powers Jan 2014

Identification Of Low Molecular Weight Compounds Inhibiting Growth Of Corynebacteria: Potential Lead Compounds For Antibiotics, Jaime L. Stark, Jennifer C. Copeland, Alexander Eletsky, Greg A. Somerville, Thomas Szyperski, Robert Powers

Robert Powers Publications

The genus Corynebacterium consists of nearly seventy species and is closely related to the genera Mycobacterium, Nocardia, and Rhodococcus. The characteristic traits of Corynebacteria include cells that are shaped like straight rods with clubbed ends, as well as an extra cell wall layer consisting of mycolic acids covalently bound to the peptidoglycan layer which adds an additional layer of protection against antibiotics. Corynebacteria are very well studied and outstandingly important for the large scale biotechnological production of amino acids and nucleotides. Moreover, Corynebacteria produce several pathogens that affect humans and livestock. Toxins produced by C. diphtheriae and C. …


[The Development Of Public Relations In] Kenya, Dane M. Kiambi Jan 2014

[The Development Of Public Relations In] Kenya, Dane M. Kiambi

College of Journalism and Mass Communications: Faculty Publications

This chapter traces the practice of PR from pre-independence Kenya to the 21st century. It emerges that the practice of PR is closely tied to major national events and to social, cultural, political and economic forces. PR roles as understood by the pre-independence colonial government: keeping the public informed on government development projects, assessing public opinion and advising government, endearing government to Kenyans and building the awareness of Kenya abroad have continued to modern-day Kenya.


Sulfites, Steve L. Taylor, Robert K. Bush, Julie A. Nordlee Jan 2014

Sulfites, Steve L. Taylor, Robert K. Bush, Julie A. Nordlee

Department of Food Science and Technology: Faculty Publications

Key Concepts

Sulfites are frequently used food and drug additives.

Ingestion of sulfite residues has been documented to trigger asthmatic reactions in sensitive individuals.

Sulfite-induced asthma occurs in less than 5% of asthmatic individuals, and those with severe, persistent asthma are at greatest risk.

The diagnosis of sulfite-induced asthma is best made by blinded oral challenge with assessment of lung function.

Labeling regulations in the United States alert sulfite-sensitive individuals to the presence of sulfites in foods, which must then be avoided.


Sjl Mice Infected With Acanthamoeba Castellanii Develop Central Nervous System Autoimmunity Through The Generation Of Cross-Reactive T Cells For Myelin Antigens, Jay Reddy, Chandirasegaran Massilamany, Francine Marciano-Cabral, Bruno Da Rocha-Azevedo, Melissa Jamerson, Arunakumar Gangaplara, David Steffen, Rana Zabad, Zsolt Illes, Raymond Sobel Jan 2014

Sjl Mice Infected With Acanthamoeba Castellanii Develop Central Nervous System Autoimmunity Through The Generation Of Cross-Reactive T Cells For Myelin Antigens, Jay Reddy, Chandirasegaran Massilamany, Francine Marciano-Cabral, Bruno Da Rocha-Azevedo, Melissa Jamerson, Arunakumar Gangaplara, David Steffen, Rana Zabad, Zsolt Illes, Raymond Sobel

School of Veterinary and Biomedical Sciences: Faculty Publications

We recently reported that Acanthamoeba castellanii (ACA), an opportunistic pathogen of the central nervous system (CNS) possesses mimicry epitopes for proteolipid protein (PLP) 139–151 and myelin basic protein 89–101, and that the epitopes induce experimental autoimmune encephalomyelitis (EAE) in SJL mice reminiscent of the diseases induced with their corresponding cognate peptides. We now demonstrate that mice infected with ACA also show the generation of crossreactive T cells, predominantly for PLP 139–151, as evaluated by T cell proliferation and IAs/dextramer staining. We verified that PLP 139–151-sensitized lymphocytes generated in infected mice contained a high proportion of T helper 1 cytokineproducing cells, …