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Why Have The Peninsular "Negritos" Remained Distinct?, Geoffrey Benjamin

Human Biology

The primary focus of this article is on the so-called negritos of Peninsular Malaysia and southern Thailand, but attention is also paid to other parts of Southeast Asia. I present a survey of current views on the "negrito" phenotype—is it single or many? If the phenotype is many (as now seems likely), it must have resulted from parallel evolution in the several different regions where it has been claimed to exist. This would suggest (contrary to certain views that have been expressed on the basis of very partial genetic data) that the phenotype originated recently and by biologically well-authenticated processes …

Terror From The Sky: Unconventional Linguistic Clues To The Negrito Past, Robert Blust

Human Biology

Within recorded history. most Southeast Asian peoples have been of "southern Mongoloid" physical type, whether they speak Austroasiatic, Tibeto-Burman, Austronesian, Tai-Kadai, or Hmong-Mien languages. However, population distributions suggest that this is a post-Pleistocene phenomenon and that for tens of millennia before the last glaciation ended Greater Mainland Southeast Asia, which included the currently insular world that rests on the Sunda Shelf, was peopled by short, dark-skinned, frizzy-haired foragers whose descendants in the Philippines came to be labeled by the sixteenth-century Spanish colonizers as "negritos," a term that has since been extended to similar groups throughout the region. There are three …

Time And Place In The Prehistory Of The Aslian Languages, Michael Dunn, Nicole Kruspe, Niclas Burenhult

Human Biology

The Aslian language family, located in the Malay Peninsula and southern Thai Isthmus, consists of four distinct branches comprising some 18 languages. These languages predate the now dominant Malay and Thai. The speakers of Aslian languages exhibit some of the highest degree of phylogenetic and societal diversity present in Mainland Southeast Asia today, among them a foraging tradition particularly associated with locally ancient, Pleistocene genetic lineages. Little advance has been made in our understanding of the linguistic prehistory of this region or how such complexity arose. In this article we present a Bayesian phylogeographic analysis of a large sample of …

Kinship Matters: Structures Of Alliance, Indigenous Foragers, And The Austronesian Diaspora, James West Turner

Human Biology

The study of kinship systems has direct relevance for the field of human genetics and the study of microevolution in human populations. Some types of postmarital residence rules—rules requiring a married couple to live with or near relatives of the husband or wife—will have consequences for the distribution of mitochondrial DNA and Y chromosome lineages. Rules that proscribe or encourage marriage with close kin will also have consequences for allele frequency. A preference for marrying at a distance, both socially and geographically, creates alliances that can have survival value for individuals and groups in an environment of periodic or unpredictable …

Who Are The Philippine Negritos? Evidence From Language, Lawrence A. Reid

Human Biology

This article addresses the linguistic evidence from which details about Philippine "negritos" can be inferred. This evidence comes from the naming practices of both negrito and non-negrito peoples, from which it can be inferred that many negrito groups have maintained a unique identity distinct from other groups since the dispersal of Malayo-Polynesian languages. Other names, such as Dupaningan and Dumagat, reference locations, from which it is assumed the negritos left after contact with Malayo-Polynesian people. Evidence also comes from the relative positions of negrito groups vis-à-vis other groups within the subfamily with which their current language can be grouped. Many …

Phenotypic Plasticity Of Climbing-Related Traits In The Ankle Joint Of Great Apes And Rainforest Hunter-Gatherers, Vivek V. Venkataraman, Thomas S. Kraft, Jeremy M. Desilva, Nathaniel J. Dominy

Human Biology

The "negrito" and African "pygmy" phenotypes are predominately exhibited by hunter-gatherers living in rainforest habitats. Foraging within such habitats is associated with a unique set of locomotor behaviors, most notably habitual vertical climbing during the pursuit of honey, fruit, and game. When performed frequently, this behavior is expected to correlate with developmentally plastic skeletal morphologies that respond to mechanical loading. Using six measurements in the distal tibia and talus that discriminate nonhuman primates by vertical climbing frequency, we tested the prediction that intraspecific variation in this behavior is reflected in the morphology of the ankle joint of habitually climbing human …

Mountain Pygmies Of Western New Guinea: A Morphological And Molecular Approach, M Tommaseo-Ponzetta, S Mona, F M. Calabrese, G Konrad, E Vacca, M Attimonelli

Human Biology

The presence of "pygmy" or pygmoid groups among New Guinea populations has been the object of scientific interest since the end of the nineteenth century. Morphological and molecular data are used here to study western New Guinea population variability, focusing in particular on two pygmoid groups living in the eastern fringe highlands of Papua: the Una and the Ketengban. Various kinds of anthropometric data are examined, as well as height, weight, and body mass index, to carry out comparisons with nearby ethnic groups living in the highland and lowland regions. The Ketengban data were also compared with other data recorded …

Evolution Of The Pygmy Phenotype: Evidence Of Positive Selection From Genome-Wide Scans In African, Asian, And Melanesian Pygmies, Andrea Bamberg Migliano, Irene Gallego Romero, Mait Metspalu, Matthew Leavesley, Luca Pagani, Tiago Antao, Da-Wei Huang, Brad T. Sherman, Katharine Siddle, Clarissa Scholes, Georgi Hudjashov, Elton Kaitokai, Avis Babalu, Maggie Belatti, Alex Cagan, Bryony Hopkinshaw, Colin Shaw, Mari Nelis, Ene Metspalu, Reedik Mägi, Richard A. Lempicki, Richard Villems, Marta Mirazon Lahr, Toomis Kivisild

Human Biology

Human pygmy populations inhabit different regions of the world, from Africa to Melanesia. In Asia, short-statured populations are often referred to as "negritos." Their short stature has been interpreted as a consequence of thermoregulatory, nutritional, and/or locomotory adaptations to life in tropical forests. A more recent hypothesis proposes that their stature is the outcome of a life history trade-off in high-mortality environments, where early reproduction is favored and, consequently, early sexual maturation and early growth cessation have coevolved. Some serological evidence of deficiencies in the growth hormone/insulin-like growth factor axis have been previously associated with pygmies’ short stature. Using genome-wide …

Mount Pinatubo, Inflammatory Cytokines, And The Immunological Ecology Of Aeta Hunter-Gatherers, Robin M. Bernstein, Nathaniel J. Dominy

Human Biology

Early growth cessation and reproduction are predicted to maximize fitness under conditions of high adult mortality, factors that could explain the pygmy phenotype of many rainforest hunter-gatherers. This life-history hypothesis is elegant but contentious in part because it lacks a clear biological mechanism. One mechanism stems from the field of human immunological ecology and the concept of inflammation "memory" across the life cycle and into subsequent generations. Maternal exposures to disease can infl uence immunological cues present in breast milk; because maternal provisioning via lactation occurs during critical periods of development, it is plausible that these cues can also mediate …

Anthropology And Gis: Temporal And Spatial Distribution Of The Philippine Negrito Groups, Sabino G. Padilla Jr

Human Biology

The Philippine "negrito" groups comprise a diverse group of populations speaking over 30 different languages, who are spread all over the archipelago, mostly in marginal areas of Luzon Island in the north, the central Visayas islands, and Mindanao in the south. They exhibit physical characteristics that are different from more than 100 Philippine ethnolinguistic groups that are categorized as non-negritos. Given their numbers, it is not surprising that Philippine negritos make up a major category in a number of general ethnographic maps produced since the nineteenth century. Reports from various ethnological surveys during this period, however, have further enriched our …

Genetic Diversity Of Four Filipino Negrito Populations From Luzon: Comparison Of Male And Female Effective Population Sizes And Differential Integration Of Immigrants Into Aeta And Agta Communities, E Heyer, M Georges, M Pachner, P Endicott

Human Biology

Genetic data corresponding to four negrito populations (two Aeta and two Agta; n = 120) from the Luzon region of the Philippines have been analyzed. These data comprise mitochondrial DNA (mtDNA) hypervariable segment 1 haplotypes and haplogroups, Y-chromosome haplogroups and short tandem repeats (STRs), autosomal STRs, and X-chromosome STRs. The genetic diversity and structure of the populations were investigated at a local, regional, and interregional level. We found a high level of autosomal differentiation, combined with no significant reduction in diversity, consistent with long-term settlement of the Luzon region by the ancestors of the Agta and Aeta followed by reduced …

Admixture Patterns And Genetic Differentiation In Negrito Groups From West Malaysia Estimated From Genome-Wide Snp Data, Timothy A. Jinam, Maude E. Phipps, Naruya Saitou, The Hugo Pan-Asian Snp Consortium

Human Biology

Southeast Asia houses various culturally and linguistically diverse ethnic groups. In Malaysia, where the Malay, Chinese, and Indian ethnic groups form the majority, there exist minority groups such as the "negritos" who are believed to be descendants of the earliest settlers of Southeast Asia. Here we report patterns of genetic substructure and admixture in two Malaysian negrito populations (Jehai and Kensiu), using ~50,000 genome-wide single-nucleotide polymorphism (SNP) data. We found traces of recent admixture in both the negrito populations, particularly in the Jehai, with the Malay through principal component analysis and STRUCTURE analysis software, which suggested that the admixture was …

The Andaman Islanders In A Regional Genetic Context: Reexamining The Evidence For An Early Peopling Of The Archipelago From South Asia, Gyaneshwer Chaubey, Phillip Endicott

Human Biology

The indigenous inhabitants of the Andaman Islands were considered by many early anthropologists to be pristine examples of a "negrito" substrate of humanity that existed throughout Southeast Asia. Despite over 150 years of research and study, questions over the extent of shared ancestry between Andaman Islanders and other small-bodied, gracile, dark-skinned populations throughout the region are still unresolved. This shared phenotype could be a product of shared history, evolutionary convergence, or a mixture of both. Recent population genetic studies have tended to emphasize long-term physical isolation of the Andaman Islanders and an affinity to ancestral populations of South Asia. We …

Climate Change Influenced Female Population Sizes Through Time Across The Indonesian Archipelago, Elsa G. Guillot, Meryanne K. Tumonggor, Stephen J. Lansing, Herawati Sudoyo, Murray P. Cox

Human Biology

Lying at the crossroads of Asia and the Pacific world, the Indonesian archipelago hosts one of the world’s richest accumulations of cultural, linguistic, and genetic variation. While the role of human migration into and around the archipelago is now known in some detail, other aspects of Indonesia’s complex history are less understood. Here, we focus on population size changes from the first settlement of Indonesia nearly 50 kya up to the historic era. We reconstructed the past effective population sizes of Indonesian women using mitochondrial DNA sequences from 2,104 individuals in 55 village communities on four islands spanning the Indonesian …

Craniodental Affinities Of Southeast Asia's "Negritos" And The Concordance With Their Genetic Affinities, David Bulbeck

Human Biology

Genetic research into Southeast Asia's "negritos" has revealed their deep-rooted ancestry, with time depth comparable to that of Southwest Pacific populations. This finding is often interpreted as evidence that negritos, in contrast to other Southeast Asians, can trace much of their ancestry directly back to the early dispersal of Homo sapiens in the order of 70 kya from Africa to Pleistocene New Guinea and Australia. One view on negritos is to lump them and Southwest Pacific peoples into an "Australoid" race whose geographic distribution had included Southeast Asia prior to the Neolithic incursion of "Mongoloid" farmers. Studies into Semang osteology …

The Skeletal Phenotype Of "Negritos" From The Andaman Islands And Philippines Relative To Global Variation Among Hunter-Gatherers, Jay T. Stock

Human Biology

The "negrito hypothesis" suggests that populations of small-bodied foragers in South and Southeast Asia who share common phenotypic characteristics may also share a common, ancient origin. The key defining characteristics of the "negrito" phenotype, small body size, dark skin, and tightly curled hair, have been interpreted as linking these populations to sub-Saharan Africans. The underlying assumption of this interpretation is that the observed phenotypic similarities likely reflect shared ancestry rather than phenotypic convergence. Current genetic evidence is inconclusive, as it both demonstrates that negrito populations have genetic affinities with neighboring populations but also rare and ancient variation that suggests considerable …

"Small Size" In The Philippine Human Fossil Record: Is It Meaningful For A Better Understanding Of The Evolutionary History Of The Negritos?, Florent Détroit, Julien Corny, Eusebio Z. Dizon, Armand S. Mijares

Human Biology

"Pygmy populations" are recognized in several places over the world, especially in Western Africa and in Southeast Asia (Philippine "negritos," for instance). Broadly defined as "small-bodied Homo sapiens" (compared with neighboring populations), their origins and the nature of the processes involved in the maintenance of their phenotype over time are highly debated. Major results have been recently obtained from population genetics on present-day negrito populations, but their evolutionary history remains largely unresolved. We present and discuss the Upper Pleistocene human remains recovered from Tabon Cave and Callao Cave in the Philippines, which are potentially highly relevant to these research …

Hunter-Gatherers In Southeast Asia: From Prehistory To The Present, Charles Higham

Human Biology

Anatomically modern hunter-gatherers expanded from Africa into Southeast Asia at least 50,000 years ago, where they probably encountered and interacted with populations of Homo erectus and Homo floresiensis and the recently discovered Denisovans. Simulation studies suggest that these hunter-gatherers may well have followed a coastal route that ultimately led to the settlement of Sahul, while archaeology confirms that they also crossed significant seas and explored well into the interior. They also adapted to marked environmental changes that alternated between relatively cool and dry conditions and warmer, wetter interludes. During the former, the sea fell by up to 120 m below …

Introduction: Revisiting The "Negrito" Hypothesis: A Transdisciplinary Approach To Human Prehistory In Southeast Asia, Phillip Endicott

Human Biology

The "negrito" hypothesis predicts that a shared phenotype among various contemporary groups of hunter-gatherers in Southeast Asia - dark skin, short stature, tight curly hair - is due to common descent from a region-wide, pre-Neolithic substrate of humanity. The alternative is that their distinctive phenotype results from convergent evolution. The core issues of the negrito hypothesis are today more relevant than ever to studies of human evolution, including the out-of-Africa migration, admixture with Denisovans, and the effects of environment and ecology on life-history traits. Understanding the current distribution of the negrito phenotype dictates a wide-ranging remit for study, including the …

Determination Of The Permeability Of The South Chamorro Seamount In Mariana Forearc Crust Using Pressure Response To Tidal Loading Method, Putri Nur El Akmal

Open Access Theses

ODP borehole observatory 1200C, drilled into the South Chamorro seamount and instrumented with Circulation Obviation Retrofit Kit (CORK), provided information about natural fluid pressure within this forearc crust. The seafloor and formation pressure data recorded hourly and shown fluctuations that are caused largely by the ocean tides. The data also shown two transient pressures increase at the time of two earthquakes. Harmonic analysis provides a simpler way to analyze the periodic tidal signals that constitute the pressure records. By using the result of the harmonic analysis and applying simple theory of formation response to tidal loading, developed by Wang & …

The Elephants Of Gash-Barka, Eritrea: Nuclear And Mitochondrial Genetic Patterns, Adam L. Brandt, Yohannes Hagos, Yohannes Yacob, Victor David, Nicholas J. Georgiadis, Jeheskel Shoshani, Alfred L. Roca

Faculty Creative and Scholarly Works

Eritrea has one of the northernmost populations of African elephants. Only about 100 elephants persist in the Gash-Barka administrative zone. Elephants in Eritrea have become completely isolated, with no gene flow from other elephant populations. The conservation of Eritrean elephants would benefit from an understanding of their genetic affinities to elephants elsewhere on the continent and the degree to which genetic variation persists in the population. Using dung samples from Eritrean elephants, we examined 18 species-diagnostic single nucleotide polymorphisms in 3 nuclear genes, sequences of mitochondrial HVR1 and ND5, and genotyped 11 microsatellite loci. The sampled Eritrean elephants carried …

Characterization Of Plp, A Phosphatidylcholine-Specific Phospholipase And Hemolysin Of Vibrio Anguillarum, Ling Li, Xiangyu Mou, David R. Nelson

Cell and Molecular Biology Faculty Publications

Background: Vibrio anguillarum is the causative agent of vibriosis in fish. Several extracellular proteins secreted by V. anguillarum have been shown to contribute to virulence. While two hemolysin gene clusters, vah1-plp and rtxACHBDE, have been previously identified and described, the activities of the protein encoded by the plp gene were not known. Here we describe the biochemical activities of the plp-encoded protein and its role in pathogenesis.

Results: The plp gene, one of the components in vah1 cluster, encodes a 416-amino-acid protein (Plp), which has homology to lipolytic enzymes containing the catalytic site amino acid signature SGNH. Hemolytic …

Stress And Reproductive Hormones In Grizzly Bears Reflect Nutritional Benefits And Social Consequences Of A Salmon Foraging Niche, Heather M. Bryan, Chris T. Darimont, Paul C. Paquet, Katherine E. Wynne-Edwards, Judit E. G. Smits

Physiology Collection

Physiological indicators of social and nutritional stress can provide insight into the responses of species to changes in food availability. In coastal British Columbia, Canada, grizzly bears evolved with spawning salmon as an abundant but spatially and temporally constrained food source. Recent and dramatic declines in salmon might have negative consequences on bear health and ultimately fitness. To examine broadly the chronic endocrine effects of a salmon niche, we compared cortisol, progesterone, and testosterone levels in hair from salmon-eating bears from coastal BC (n = 75) with the levels in a reference population from interior BC lacking access to salmon …

Personal And Household Hygiene, Environmental Contamination, And Health In Undergraduate Residence Halls In New York City, 2011, Benjamin A. Miko, Bevin Cohen, Katharine Haxall, Laurie Conway, Nicole Kelly, Dianne Stare, Christina Tropiano, Allan Gilman, Samuel L. Seward, Elaine Larson

Publications and Research

Background While several studies have documented the importance of hand washing in the university setting, the added role of environmental hygiene remains poorly understood. The purpose of this study was to characterize the personal and environmental hygiene habits of college students, define the determinants of hygiene in this population, and assess the relationship between reported hygiene behaviors, environmental contamination, and health status. Methods 501 undergraduate students completed a previously validated survey assessing baseline demographics, hygiene habits, determinants of hygiene, and health status. Sixty survey respondents had microbiological samples taken from eight standardized surfaces in their dormitory environment. Bacterial contamination was …

Design, Synthesis And Cytotoxic Evaluation Of O-Carboxamido Stilbene Analogues, Mohamad Nurul Azmi, Mohd Fadzli Md Din, Chin Hui Kee, Munirah Suhaimi, Kheng Ping Ang, Kartini Ahmad, Mohd Azlan Nafiah, Noel Francis Thomas, Kok Hoong Leong, Khalijah Awang

Research Publications (2011 to 2015)

Resveratrol, a natural stilbene found in grapes and wines exhibits a wide range of pharmacological properties. Resveratrol is also known as a good chemopreventive agent for inhibiting carcinogenesis processes that target kinases, cyclooxygenases, ribonucleotide reductase and DNA polymerases. A total of 19 analogues with an amide moiety were synthesized and the cytotoxic effects of the analogues on a series of human cancer cell lines are reported. Three compounds 6d, 6i and 6n showed potent cytotoxicity against prostate cancer DU-145 (IC50 = 16.68 µM), colon cancer HT-29 (IC50 = 7.51 µM) and breast cancer MCF-7 (IC50 = 21.24 µM), respectively, which …

Red Grooms: The Forgotten Existentialist Ruckus Manhattan And The Influence Of Sartrian Existentialism, John E. Curley Iv

Electronic Theses and Dissertations Archive

This thesis focuses on the influence of the writings of Jean-Paul Sartre on the American artist Red Grooms. An analysis of Grooms's "sculpto-pictorama" Ruckus Manhattan as an installation demonstrates the influences of Sartrian existential concepts and acts as an arena in which viewers can discover these existential ethos in a culturally specific setting. Red Grooms's background as an American artist working in New York in the mid-twentieth centuryand his interest in French art and philosophy document further the influence of existentialism on Grooms. A thorough discussion of tableaux from Ruckus Manhattan, which visually represent Sartiran existential concepts, reveals Grooms to …

Minimum-Energy Exploration And Coverage For Robotic Systems, Serge Antoun Salan

Electronic Theses and Dissertations Archive

This dissertation is concerned with the question of autonomously and efficiently exploring three-dimensional environments. Hence, three robotics problems are studied in this work: the motion planning problem, the coverage problem and the exploration problem. The work provides a better understanding of motion and exploration problems with regard to their mathematical formulation and computational complexity, and proposes solutions in the form of algorithms capable of being implemented on a wide range of robotic systems.Because robots generally operate on a limited power source, the primary focus is on minimizing energy while moving or navigating in the environment. Many approaches address motion planning …

Local Delivery Of Growth Stimulators For Diabetic Foot Ulcers: A Preliminary In Vitro Study, Jennifer Leigh Baldwin

Electronic Theses and Dissertations Archive

Diabetic foot ulcers affect approximately 15% of the almost 20.8 million people with diabetes mellitus, costing approximately $10.9 billion annually. Diabetic foot ulcers are particularly difficult to treat due to neuropathy and healing deficiencies. The objective of this in vitro study was to measure the effects of adenosine and glutathione on fibroblast proliferation and collagen synthesis while improving the availability of these compounds at the wound site with the use of a chitosan sponge as a localized delivery vehicle. This study found adenosine (500µM) and glutathione (250µM) enhanced fibroblast proliferation by approximately 100% and 46% increase as compared to untreated …

Hierarchical Feature Learning, Jayanta Kumar Dutta

Electronic Theses and Dissertations Archive

The success of many tasks depends on good feature representation which is often domain-specific and hand-crafted requiring substantial human effort. Such feature representation is not general, i.e. unsuitable for even the same task across multiple domains, let alone different tasks.To address these issues, a multilayered convergent neural architecture is presented for learning from repeating spatially and temporally coincident patterns in data at multiple levels of abstraction. The bottom-up weights in each layer are learned to encode a hierarchy of overcomplete and sparse feature dictionaries from space- and time-varying sensory data. Two algorithms are investigated: recursive layer-by-layer spherical clustering and sparse …

A Statistical Analysis Of The Beneficial Effects Of Ferrous Chloride At The T. E. Maxson Treatment Plant, Bjorn Carlsson

Electronic Theses and Dissertations Archive

Addition of ferrous chloride can improve wastewater treatment plant process outcomes. In the study, a municipal wastewater treatment plant ceased adding ferrous chloride to its anaerobic lagoon and belt filter press filtrate return streams. Total suspended solids (TSS) and five-day biochemical oxygen demand (BOD5) effluent concentrations and percent removals, primary clarifier BOD5 and TSS effluent concentration and percent removals, sludge volume index (SVI), sludge polymer feed demand, and H2S concentration in biogas on days with ferrous chloride addition were all compared using non-parametric randomization statistical techniques to days without ferrous chloride addition. It was found that plant performance on days …