Open Access. Powered by Scholars. Published by Universities.®
- Discipline
-
- Life Sciences (3125)
- Arts and Humanities (2229)
- Social and Behavioral Sciences (2175)
- Medicine and Health Sciences (1741)
- Law (1584)
-
- Physical Sciences and Mathematics (1185)
- Education (1058)
- Animal Sciences (948)
- Engineering (718)
- Biology (622)
- Environmental Sciences (510)
- Medical Sciences (435)
- Plant Sciences (394)
- History (390)
- Psychology (385)
- Religion (371)
- Communication (356)
- Higher Education (315)
- Ecology and Evolutionary Biology (302)
- Sociology (299)
- English Language and Literature (272)
- Business (269)
- Medical Specialties (259)
- Agriculture (247)
- Anthropology (236)
- American Studies (230)
- Zoology (220)
- Creative Writing (196)
- Library and Information Science (196)
- Veterinary Medicine (194)
- Institution
-
- University of Nebraska - Lincoln (1369)
- TÜBİTAK (382)
- Utah State University (381)
- University of South Florida (375)
- University of Kentucky (335)
-
- University of New Hampshire (315)
- Louisiana State University (304)
- California Polytechnic State University, San Luis Obispo (291)
- Brigham Young University (288)
- University of Malaya (273)
- Washington University School of Medicine (240)
- WellBeing International (228)
- Wayne State University (221)
- Pepperdine University (220)
- Virginia Commonwealth University (219)
- University of Central Florida (208)
- University of Arkansas, Fayetteville (205)
- Purdue University (194)
- St. John's University School of Law (193)
- Ateneo de Manila University (191)
- Clemson University (188)
- University of Montana (164)
- San Jose State University (162)
- University of New Mexico (162)
- City University of New York (CUNY) (161)
- University of Alabama at Birmingham (152)
- Marquette University (141)
- University of Connecticut (137)
- Eastern Illinois University (133)
- Portland State University (133)
- Keyword
-
- Animals (262)
- Newspaper (177)
- Humans (137)
- Education (129)
- Mice (124)
-
- Student newspaper (107)
- 2012 (99)
- Male (84)
- Climate change (76)
- Female (76)
- History (75)
- Biological sciences (74)
- Ecology (71)
- Poetry (70)
- Biology (68)
- EIU (64)
- Student Newspaper (64)
- Agriculture (63)
- United States (63)
- Daily Eastern News (58)
- Eastern Illinois University (58)
- Sustainability (58)
- Evolution (56)
- USU Extension (56)
- Utah State University Extension (56)
- Spartan Daily (55)
- Inflammation (54)
- Law (53)
- Art (52)
- Women (52)
- Publication
-
- Theses and Dissertations (483)
- Electronic Theses and Dissertations (325)
- Faculty Publications (228)
- Open Access Publications (218)
- Philippine Studies: Historical and Ethnographic Viewpoints (189)
-
- Theses (165)
- Student Works (2010-2019) (161)
- Master's Theses (157)
- United States Department of Agriculture Wildlife Services: Staff Publications (146)
- USF Tampa Graduate Theses and Dissertations (125)
- St. John's Law Review (124)
- Faculty Scholarship (122)
- Dissertations (118)
- Turkish Journal of Veterinary & Animal Sciences (116)
- Research Publications (2011 to 2015) (109)
- Graduate Theses and Dissertations (107)
- Honors Theses (106)
- Criticism (103)
- All ETDs from UAB (101)
- Turkish Journal of Zoology (99)
- United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications (98)
- Stony Brook Theses and Dissertations Collection, 2006-2020 (closed to submissions) (95)
- Articles (93)
- Graduate Theses, Dissertations, and Problem Reports (ETD) (92)
- Publications and Research (89)
- Dissertations and Theses (88)
- Leaven (88)
- Pepperdine Law Review (86)
- LSU Master's Theses (83)
- All Theses (82)
- Publication Type
Articles 17431 - 17460 of 19084
Full-Text Articles in Entire DC Network
Designing A Monitoring Plan, Eric M. Gese, Hilary S. Cooley, Frederick F. Knowlton
Designing A Monitoring Plan, Eric M. Gese, Hilary S. Cooley, Frederick F. Knowlton
United States Department of Agriculture Wildlife Services: Staff Publications
Monitoring is the collection and analysis of repeated observations or measurements ro determine whether a management action is having the desired effect of meeting management objectives and demonstrating success or failure of a management strategy (Elzinga et al 2001). Monitoring is composed of a series of surveys (sensu Chapter 2) framed in a design aimed at answering specific management questions. There are many reasons to establish monitoring plans, such as when a carnivore species is of a high social or economic value, is rare and decreasing in numbers, is in eminent danger of extinction, or is part of a …
Influence Of The Urban Matrix On Space Use Of Coyotes In The Chicago Metropolitan Area, Eric M. Gese, Paul S. Morey, Stanley D. Gehrt
Influence Of The Urban Matrix On Space Use Of Coyotes In The Chicago Metropolitan Area, Eric M. Gese, Paul S. Morey, Stanley D. Gehrt
United States Department of Agriculture Wildlife Services: Staff Publications
Expansion of the coyote’s (Canis latrans) distribution in North America has included most urban areas. Concerns for human safety have resulted in the need to understand the spatial relationship between humans and coyotes in urban landscapes. We examined the space use of coyotes with varying degrees of urban development in the Chicago metropolitan area, IL, USA, between March 2000 and December 2002. We compared home-range size, land use, and habitat use of 41 radio-collared coyotes (5 coyotes residing in developed areas, 29 in less-developed areas, and 7 in a matrix of developed and less-developed areas). The partitioning of …
Do Gastrointestinal Taste Receptors Contribute To Associative Learning And Foraging Behavior?, G. J. Golden, A. M. Hussey, B. A. Kimball
Do Gastrointestinal Taste Receptors Contribute To Associative Learning And Foraging Behavior?, G. J. Golden, A. M. Hussey, B. A. Kimball
United States Department of Agriculture Wildlife Services: Staff Publications
Foraging behavior is an expression of learning, context, and experience arising from integration of sensory information obtained during feeding with postingestive consequences of food ingestion. Although it has been well established that gustatory and olfactory systems of the mouth and nose provide sensory information to the consumer (in the form of flavor), sweet and bitter taste receptors have recently been identified in the intestinal tract of humans and rodents. It remains possible that sensory information generated in the gut could contribute to the learning process. Thus, a series of experiments was conducted to determine if classical associative learning occurs when …
Crop Management Of Switchgrass, Matt A. Sanderson, Marty R. Schmer, Vance Owens, Pat Keyser, Wolter Elbersen
Crop Management Of Switchgrass, Matt A. Sanderson, Marty R. Schmer, Vance Owens, Pat Keyser, Wolter Elbersen
Department of Agronomy and Horticulture: Faculty Publications
Management of switchgrass for bioenergy and forage share some commonalities, of particular interest in bioenergy crop production is: (1) rapid establishment of switchgrass to generate harvestable biomass in the seeding year, (2) highly efficient management of soil and fertilizer N to minimize external energy inputs, and (3) harvest management to maximize yields of lignocellulose. Bioenergy cropping may entail management for multiple services in addition to biomass yield including soil C sequestration, wildlife habitat, landscape management, and water quality protection. Management is a critical factor especially as land classified as marginal or idle land will be emphasized for bioenergy production to …
Registration Of ‘Ne01481’ Hard Red Winter Wheat, P. Stephen Baenziger, Robert A. Graybosch, Teshome H. Regassa, Lenis Alton Nelson, Robert N. Klein, Dipak K. Santra, D. D. Baltensperger, Lei Xu, Stephen N. Wegulo, Y. Jin, J. Kolmer, Ming-Shun Chen, Guihua Bai
Registration Of ‘Ne01481’ Hard Red Winter Wheat, P. Stephen Baenziger, Robert A. Graybosch, Teshome H. Regassa, Lenis Alton Nelson, Robert N. Klein, Dipak K. Santra, D. D. Baltensperger, Lei Xu, Stephen N. Wegulo, Y. Jin, J. Kolmer, Ming-Shun Chen, Guihua Bai
Department of Agronomy and Horticulture: Faculty Publications
‘NE01481’ (Reg. No. CV-1061, PI 659689) hard red winter wheat (Triticum aestivum L.) was developed cooperatively by the Nebraska Agricultural Experiment Station and the USDA-ARS and released in April 2010. NE01481 will be marketed as Husker Genetics brand McGill. In addition to superior agronomic performance, Nebraska wheat growers would like to have increased resistance to Wheat soilborne mosaic virus. NE01481 was selected from the cross NE92458/‘Ike’ that was made in 1995. The pedigree of NE92458 is OK83201/‘Redland’ and the pedigree of OK83201, an experimental line developed by Oklahoma State University is ‘Vona’//‘Chisholm’/‘Plainsman V’. NE01481 was selected with the bulk …
Local Conditions, Not Regional Gradients, Drive Demographic Variation Of Giant Ragweed (Ambrosia Trifida) And Common Sunflower (Helianthus Annuus) Across Northern U.S. Maize Belt, Samuel E. Wortman, Adam Davis, Brian J. Schutte, John L. Lindquist, John Cardina, Joel Felix, Christy L. Sprague, J. Anita Dille, Analiza H. M. Ramirez, Graig Reicks, Sharon A. Clay
Local Conditions, Not Regional Gradients, Drive Demographic Variation Of Giant Ragweed (Ambrosia Trifida) And Common Sunflower (Helianthus Annuus) Across Northern U.S. Maize Belt, Samuel E. Wortman, Adam Davis, Brian J. Schutte, John L. Lindquist, John Cardina, Joel Felix, Christy L. Sprague, J. Anita Dille, Analiza H. M. Ramirez, Graig Reicks, Sharon A. Clay
Department of Agronomy and Horticulture: Faculty Publications
Knowledge of environmental factors influencing demography of weed species will improve understanding of current and future weed invasions. The objective of this study was to quantify regional-scale variation in vital rates of giant ragweed and common sunflower . To accomplish this objective, a common field experiment was conducted across seven sites between 2006 and 2008 throughout the north central U.S. maize belt. Demographic parameters of both weed species were measured in intra- and interspecific competitive environments, and environmental data were collected within site-years. Site was the strongest predictor of below ground vital rates (summer and winter seed survival and seedling …
Integrin-Mediated Mechanotransduction Pathway Of Low-Intensity Continuous Ultrasound In Human Chondrocytes, Nicholas P. Whitney, Allyson C. Lamb, Tobias M. Louw, Anuradha Subramanian
Integrin-Mediated Mechanotransduction Pathway Of Low-Intensity Continuous Ultrasound In Human Chondrocytes, Nicholas P. Whitney, Allyson C. Lamb, Tobias M. Louw, Anuradha Subramanian
Department of Chemical and Biomolecular Engineering: Faculty Publications
Chondrocytes are mechanosensitive cells that require mechanical stimulation for proper growth and function in in vitro culture systems. Ultrasound (US) has emerged as a technique to deliver mechanical stress; however, the intracellular signaling components of the mechanotransduction pathways that transmit the extracellular mechanical stimulus to gene regulatory mechanisms are not fully defined. We evaluated a possible integrin/mitogen-activated protein kinase (MAPK) mechanotransduction pathway using Western blotting with antibodies targeting specific phosphorylation sites on intracellular signaling proteins. US stimulation of chondrocytes induced phosphorylation of focal adhesion kinase (FAK), Src, p130 Crk-associated substrate (p130Cas), CrkII, and extracellular-regulated kinase (Erk). Furthermore, pre-incubation with inhibitors …
Agriculture And Food In Crisis: Conflict, Resistance, And Renewal [Book Review], Charles A. Francis
Agriculture And Food In Crisis: Conflict, Resistance, And Renewal [Book Review], Charles A. Francis
Department of Agronomy and Horticulture: Faculty Publications
Edited by Fred Magdoff and Brian Tokar. 2010. Monthly Review Press, New York, New York, United States. 348 p. Paperback, cloth US$ 75.00, paper US$ 18.95, ISBN-13 978-1-58367-226-6.
That doubling of food production over the next four decades will be needed to adequately nourish our human population is not news, but the incredible steps essential to achieve that goal and their political and social implications are less well reported. In this series of 16 essays edited by Fred Magdoff and Brian Tokar, several thoughtful specialists in global food issues explore the historical, biological, economic, energy, political and social dimensions of …
Cultivating A Movement: Excerpts From An Oral History Of Organic Farming And Sustainable Agriculture On California’S Central Coast [Book Review], Charles A. Francis
Cultivating A Movement: Excerpts From An Oral History Of Organic Farming And Sustainable Agriculture On California’S Central Coast [Book Review], Charles A. Francis
Department of Agronomy and Horticulture: Faculty Publications
Edited by I. Reti and S. Rabkin, 2011. University of California, Santa Cruz, Library, Santa Cruz, California, United States. 299 p., US$19.95, ISBN 9-780972-33431, paper.
Often the most compelling evidence for success of organic farming comes from the personal stories of farmers. Coupled with reports on the application of science in organics, the practical knowledge of people in the field provides a rich foundation for the ongoing growth of this intriguing sector of the food system. This collection of interviews by the staff of the Regional History Project is one unique activity of the University of California, Santa Cruz library, …
Structural Variants In The Soybean Genome Localize To Clusters Of Biotic Stress-Response Genes, Leah K. Mchale, William J. Haun, Wayne W. Xu, Pudota B. Bhaskar, Justin E. Anderson, D. L. Hyten, Daniel J. Gerhardt, Jeffrey A. Jeddeloh, Robert M. Stupar
Structural Variants In The Soybean Genome Localize To Clusters Of Biotic Stress-Response Genes, Leah K. Mchale, William J. Haun, Wayne W. Xu, Pudota B. Bhaskar, Justin E. Anderson, D. L. Hyten, Daniel J. Gerhardt, Jeffrey A. Jeddeloh, Robert M. Stupar
Department of Agronomy and Horticulture: Faculty Publications
Genome-wide structural and gene content variations are hypothesized to drive important phenotypic variation within a species. Structural and gene content variations were assessed among four soybean (Glycine max) genotypes using array hybridization and targeted resequencing. Many chromosomes exhibited relatively low rates of structural variation (SV) among genotypes. However, several regions exhibited both copy number and presence-absence variation, the most prominent found on chromosomes 3, 6, 7, 16, and 18. Interestingly, the regions most enriched for SV were specifically localized to gene-rich regions that harbor clustered multigene families. The most abundant classes of gene families associated with these regions …
Molecular Mapping Of Soybean Rust Resistance In Soybean Accession Pi 561356 And Snp Haplotype Analysis Of The Rpp1 Region In Diverse Germplasm, Ki-Seung Kim, Jair R. Unfried, D. L. Hyten, Reid D. Frederick, Glen L. Hartman, Randall L. Nelson, Qijian Song, Brian W. Diers
Molecular Mapping Of Soybean Rust Resistance In Soybean Accession Pi 561356 And Snp Haplotype Analysis Of The Rpp1 Region In Diverse Germplasm, Ki-Seung Kim, Jair R. Unfried, D. L. Hyten, Reid D. Frederick, Glen L. Hartman, Randall L. Nelson, Qijian Song, Brian W. Diers
Department of Agronomy and Horticulture: Faculty Publications
Soybean rust (SBR), caused by Phakopsora pachyrhizi Sydow, is one of the most economically important and destructive diseases of soybean [Glycine max (L.) Merr.] and the discovery of novel SBR resistance genes is needed because of virulence diversity in the pathogen. The objectives of this research were to map SBR resistance in plant introduction (PI) 561356 and to identify single nucleotide polymorphism (SNP) haplotypes within the region on soybean chromosome 18 where the SBR resistance gene Rpp1 maps. One-hundred F2:3 lines derived from a cross between PI 561356 and the susceptible experimental line LD02-4485 were genotyped with genetic …
High-Resolution Mapping Of Open Chromatin In The Rice Genome, Wenli Zhang, Yufeng Wu, James C. Schnable, Zixian Zeng, Michael Freeling, Gregory E. Crawford, Jiming Jiang
High-Resolution Mapping Of Open Chromatin In The Rice Genome, Wenli Zhang, Yufeng Wu, James C. Schnable, Zixian Zeng, Michael Freeling, Gregory E. Crawford, Jiming Jiang
Department of Agronomy and Horticulture: Faculty Publications
Gene expression is controlled by the complex interaction of transcription factors binding to promoters and other regulatory DNA elements. One common characteristic of the genomic regions associated with regulatory proteins is a pronounced sensitivity to DNase I digestion. We generated genome-wide high-resolution maps of DNase I hypersensitive (DH) sites from both seedling and callus tissues of rice (Oryza sativa). Approximately 25% of the DH sites from both tissues were found in putative promoters, indicating that the vast majority of the gene regulatory elements in rice are not located in promoter regions. We found 58% more DH sites in …
The Biological Systems Engineering Program In Nebraska 1895-2011, William Splinter
The Biological Systems Engineering Program In Nebraska 1895-2011, William Splinter
Department of Agricultural and Biological Systems Engineering: Faculty Publications
4. Preface: How Mechanization Has Impacted Food Production THE PIONEERS WHO ESTABLISHED THIS DEPARTMENT 8 Oscar Van Pelt Stout 10 Charles Russ Richards 12 J. Brownlee Davidson 14 Leon W. Chase FORMER FACULTY AND THEIR CONTRIBUTIONS 18 Laurence Froyd Seaton 20 Ivan D.Wood 22 Oscar W. Sjogren 23 Chauncey W. Smith 25 Elmer E. Brackett 27 Claud Kedzie Shedd 29 Ruby M. Loper 31 Lester F. Larsen 33 Lloyd W. Hurlbut 36 Rollin Schnieder 39 Howard D. Wittmuss 41 Deon Axthelm 46 Paul. E. Fischbach 48 Stuart O. Nelson 51 Kenneth von Bargen 56 John R. Davis 58 Robert W. …
Climate Change Impacts On Streamflow, Water Quality, And Best Management Practices For The Shell And Logan Creek Watersheds In Nebraska, M. W. Van Liew, S. Feng, T. B. Pathak
Climate Change Impacts On Streamflow, Water Quality, And Best Management Practices For The Shell And Logan Creek Watersheds In Nebraska, M. W. Van Liew, S. Feng, T. B. Pathak
Department of Agricultural and Biological Systems Engineering: Faculty Publications
Improvements in the management of water, sediment, and nutrients under future climatic conditions are needed to ensure increased crop and livestock production to meet greater global needs and the future availability of water for competing demands and protection against adverse water quality impairments. This study determined the impacts of future climate change scenarios on streamflow, water quality, and best management practices (BMPs) for two watersheds in Nebraska, USA. The Soil and Water Assessment Tool (SWAT) was employed to simulate streamflow, sediment, total nitrogen (N) and total phosphorus (P) from the Shell Creek Watershed near Columbus, Nebraska and the Logan Creek …
Runoff Nutrient Loads As Affected By Residue Cover, Manure Application Rate, And Flow Rate, Chance Thayer, John E. Gilley, Lisa M. Durso, David B. Marx
Runoff Nutrient Loads As Affected By Residue Cover, Manure Application Rate, And Flow Rate, Chance Thayer, John E. Gilley, Lisa M. Durso, David B. Marx
Department of Agricultural and Biological Systems Engineering: Faculty Publications
Manure is applied to cropland areas with varying surface cover to meet single‐year or multiple‐year crop nutrient requirements. The objectives of this field study were to: (1) examine runoff water quality characteristics following land application of manure to sites with and without wheat residue, (2) compare the water quality impacts of land application of manure to meet 0‐, 1‐, 2‐, 4‐, and 8‐year P‐based requirements for corn, and (3) evaluate the effects of varying runoff rates on runoff nutrient loads. Three 30‐min simulated rainfall events, separated by 24 h intervals, were applied at an intensity of 70 mm h‐1 …
Value-Added Uses For Crude Glycerol–A Byproduct Of Biodiesel Production, Fangxia Yang, Milford Hanna, Runcang Sun
Value-Added Uses For Crude Glycerol–A Byproduct Of Biodiesel Production, Fangxia Yang, Milford Hanna, Runcang Sun
Department of Agricultural and Biological Systems Engineering: Faculty Publications
Biodiesel is a promising alternative, and renewable, fuel. As its production increases, so does production of the principle co-product, crude glycerol. The effective utilization of crude glycerol will contribute to the viability of biodiesel. In this review, composition and quality factors of crude glycerol are discussed. The value-added utilization opportunities of crude glycerol are reviewed. The majority of crude glycerol is used as feedstock for production of other value-added chemicals, followed by animal feeds.
Field Scale Modeling To Estimate Phosphorus And Sediment Load Reductions Using A Newly Developed Graphical User Interface For Soil And Water Assessment Tool, Aaron R. Mittelstet, Erin R. Daly, Daniel E. Storm, Michael J. White, Greg A. Kloxin
Field Scale Modeling To Estimate Phosphorus And Sediment Load Reductions Using A Newly Developed Graphical User Interface For Soil And Water Assessment Tool, Aaron R. Mittelstet, Erin R. Daly, Daniel E. Storm, Michael J. White, Greg A. Kloxin
Department of Agricultural and Biological Systems Engineering: Faculty Publications
Streams throughout the North Canadian River watershed in northwest Oklahoma, USA have elevated levels of nutrients and sediment. Soil and Water Assessment Tool (SWAT) was used to identify areas that likely contributed disproportionate amounts of Phosphorus (P) and sediment to Lake Overholser, the receiving reservoir at the watershed outlet. These sites were then targeted by the Oklahoma Conservation Commission (OCC) to implement conservation practices, such as conservation tillage and pasture planting as part of a US Environmental Protection Agency Section 319(h) project. Conservation practices were implemented on 238 fields. The objective of this project was to evaluate conservation practice effectiveness …
Whose Water Is It Anyway? Comparing The Water Rights Frameworks Of Arkansas, Oklahoma, Texas, New Mexico, Georgia, Alabama, And Florida, M. D. Smolen, Aaron R. Mittelstet, Bekki Harjo
Whose Water Is It Anyway? Comparing The Water Rights Frameworks Of Arkansas, Oklahoma, Texas, New Mexico, Georgia, Alabama, And Florida, M. D. Smolen, Aaron R. Mittelstet, Bekki Harjo
Department of Agricultural and Biological Systems Engineering: Faculty Publications
In most states surface waters, (streams, lakes, and coastal waters) are owned by the public. On the other hand, ground water may be privately or publicly owned. Because all waters are linked through the hydrologic cycle, and the hydrologic cycle is not confined within any geographic or political boundary, the question of ownership is generally replaced by one of who has the right to manage, divert, use, or sell the water.
Large-Scale On-Farm Implementation Of Soil Moisture-Based Irrigation Management Strategies For Increasing Maize Water Productivity, Suat Irmak, Michael J. Burgert, Haishun Yang, Kenneth G. Cassman, Daniel T. Walters, William R. Rathje, Jose O. Payero, Patricio Grassini, Mark S. Kuzila, Kelly J. Brunkhorst, Dean E. Eisenhauer, William L. Kranz, Brandy Vandewalle, Jennifer M. Rees, Gary L. Zoubek, Charles A. Shapiro, Gregory J. Teichmeier
Large-Scale On-Farm Implementation Of Soil Moisture-Based Irrigation Management Strategies For Increasing Maize Water Productivity, Suat Irmak, Michael J. Burgert, Haishun Yang, Kenneth G. Cassman, Daniel T. Walters, William R. Rathje, Jose O. Payero, Patricio Grassini, Mark S. Kuzila, Kelly J. Brunkhorst, Dean E. Eisenhauer, William L. Kranz, Brandy Vandewalle, Jennifer M. Rees, Gary L. Zoubek, Charles A. Shapiro, Gregory J. Teichmeier
Department of Agricultural and Biological Systems Engineering: Faculty Publications
Irrigated maize is produced on about 3.5 Mha in the U.S. Great Plains and western Corn Belt. Most irrigation water comes from groundwater. Persistent drought and increased competition for water resources threaten long-term viability of groundwater resources, which motivated our research to develop strategies to increase water productivity without noticeable reduction in maize yield. Results from previous research at the University of Nebraska-Lincoln (UNL) experiment stations in 2005 and 2006 found that it was possible to substantially reduce irrigation amounts and increase irrigation water use efficiency (IWUE) and crop water use efficiency (CWUE) (or crop water productivity) with little or …
P95. In Vivo Loads In The Cervical Spine: A Preliminary Investigation Using A Force-Sensing Implant, Rebecca A. Wachs, Mary Beth M. Grabowsky, Joseph C. Glennon, Eric H. Ledet
P95. In Vivo Loads In The Cervical Spine: A Preliminary Investigation Using A Force-Sensing Implant, Rebecca A. Wachs, Mary Beth M. Grabowsky, Joseph C. Glennon, Eric H. Ledet
Department of Agricultural and Biological Systems Engineering: Faculty Publications
BACKGROUND CONTEXT: It is estimated that up to 80% of the general population will experience at least one significant bout of low back pain in their lifetime. The leading known cause of low back pain is degenerative disc disease (DDD). Many established risk factors for low back pain and DDD are mechanical in nature and are often related to occupational activities, such as poor posture and frequent/heavy lifting. Altered mechanical loading in the spine has been shown to be a potential stimulus for disc degeneration. However, a link between occupational/environmental factors and intervertebral loading has never been demonstrated in vivo. …
Do Clark’S Nutcrackers Demonstrate What-Where-When Memory On A Cache-Recovery Task?, Kristy L. Gould, Amy J. Ort, Alan C. Kamil
Do Clark’S Nutcrackers Demonstrate What-Where-When Memory On A Cache-Recovery Task?, Kristy L. Gould, Amy J. Ort, Alan C. Kamil
Avian Cognition Papers
What-where-when (WWW) memory during cache recovery was investigated in six Clark’s nutcrackers. During caching, both red- and blue-colored pine seeds were cached by the birds in holes filled with sand. Either a short (3 day) retention interval (RI) or a long (9 day) RI was followed by a recovery session during which caches were replaced with either a single seed or wooden bead depending upon the color of the cache and length of the retention interval. Knowledge of what was in the cache (seed or bead), where it was located, and when the cache had been made (3 or 9 …
High-Efficiency Talen-Based Gene Editing Produces Disease-Resistant Rice, Ting Li, Martin H. Spalding, Donald P. Weeks, Bing Yang
High-Efficiency Talen-Based Gene Editing Produces Disease-Resistant Rice, Ting Li, Martin H. Spalding, Donald P. Weeks, Bing Yang
Department of Biochemistry: Faculty Publications
Transcription activator–like (TAL) effectors of Xanthomonas oryzae pv. oryzae (Xoo) contribute to pathogen virulence by transcriptionally activating specific rice disease-susceptibility (S) genes. TAL effector nucleases (TALENs)—fusion proteins derived from the DNA recognition repeats of native or customized TAL effectors and the DNA cleavage domains of FokI—have been used to create site-specific gene modifications in plant cells, yeast, animals, and even human pluripotent cells. Here, we exploit TALEN technology to edit a specific S gene in rice to thwart the virulence strategy of X. oryzae and thereby engineer heritable genome modifications for resistance to bacterial blight, a devastating disease …
Genome, Functional Gene Annotation, And Nuclear Transformation Of The Heterokont Oleaginous Alga Nannochloropsis Oceanica Ccmp1779, Astrid Vieler, Guangxi Wu, Chia-Hong Tsai, Blair Bullard, Adam J. Cornish, Christopher Harvey, Ida-Barbara Reca, Chelsea Thornburg, Rujira Achawanantakun, Christopher J. Buehl, Michael S. Campbell, David Cavalier, Kevin L. Childs, Teresa J. Clark, Rahul Deshpande, Erika Erickson, Ann Armenia Ferguson, Witawas Handee, Que Kong, Xiaobo Li, Bensheng Liu, Steven Lundback, Cheng Peng, Rebecca Roston, Michigan State University, Jeffrey P. Simpson, Allan Terbush, Jaruswan Warakanont, Simone Zäuner, Eva M. Farre, Eric L. Hegg, Ning Jiang, Min-Hao Kuo, Yan Lu, Krishna K. Niyogi, John Ohlrogge, Katherine W. Osteryoung, Yair Shachar-Hill, Barbara B. Sears, Yanni Sun, Hideki Takahashi, Mark Yandell, Shin-Han Shiu, Christoph Benning
Genome, Functional Gene Annotation, And Nuclear Transformation Of The Heterokont Oleaginous Alga Nannochloropsis Oceanica Ccmp1779, Astrid Vieler, Guangxi Wu, Chia-Hong Tsai, Blair Bullard, Adam J. Cornish, Christopher Harvey, Ida-Barbara Reca, Chelsea Thornburg, Rujira Achawanantakun, Christopher J. Buehl, Michael S. Campbell, David Cavalier, Kevin L. Childs, Teresa J. Clark, Rahul Deshpande, Erika Erickson, Ann Armenia Ferguson, Witawas Handee, Que Kong, Xiaobo Li, Bensheng Liu, Steven Lundback, Cheng Peng, Rebecca Roston, Michigan State University, Jeffrey P. Simpson, Allan Terbush, Jaruswan Warakanont, Simone Zäuner, Eva M. Farre, Eric L. Hegg, Ning Jiang, Min-Hao Kuo, Yan Lu, Krishna K. Niyogi, John Ohlrogge, Katherine W. Osteryoung, Yair Shachar-Hill, Barbara B. Sears, Yanni Sun, Hideki Takahashi, Mark Yandell, Shin-Han Shiu, Christoph Benning
Department of Biochemistry: Faculty Publications
Unicellular marine algae have promise for providing sustainable and scalable biofuel feedstocks, although no single species has emerged as a preferred organism. Moreover, adequate molecular and genetic resources prerequisite for the rational engineering of marine algal feedstocks are lacking for most candidate species. Heterokonts of the genus Nannochloropsis naturally have high cellular oil content and are already in use for industrial production of high-value lipid products. First success in applying reverse genetics by targeted gene replacement makes Nannochloropsis oceanica an attractive model to investigate the cell and molecular biology and biochemistry of this fascinating organism group. Here we present the …
Role Of Apoptosis-Inducing Factor, Proline Dehydrogenase, And Nadph Oxidase In Apoptosis And Oxidative Stress, Sathish Kumar Natarajan, Donald F. Becker
Role Of Apoptosis-Inducing Factor, Proline Dehydrogenase, And Nadph Oxidase In Apoptosis And Oxidative Stress, Sathish Kumar Natarajan, Donald F. Becker
Department of Biochemistry: Faculty Publications
Flavoproteins catalyze a variety of reactions utilizing flavin mononucleotide or flavin adenine dinucleotide as cofactors. The oxidoreductase properties of flavoenzymes implicate them in redox homeostasis, oxidative stress, and various cellular processes, including programmed cell death. Here we explore three critical flavoproteins involved in apoptosis and redox signaling, ie, apoptosis-inducing factor (AIF), proline dehydrogenase, and NADPH oxidase. These proteins have diverse biochemical functions and influence apoptotic signaling by unique mechanisms. The role of AIF in apoptotic signaling is two-fold, with AIF changing intracellular location from the inner mitochondrial membrane space to the nucleus upon exposure of cells to apoptotic stimuli. In …
Substrate Channeling In Proline Metabolism, Benjamin W. Arentson, Nikhilesh Sanyal, Donald F. Becker
Substrate Channeling In Proline Metabolism, Benjamin W. Arentson, Nikhilesh Sanyal, Donald F. Becker
Department of Biochemistry: Faculty Publications
Proline metabolism is an important pathway that has relevance in several cellular functions such as redox balance, apoptosis, and cell survival. Results from different groups have indicated that substrate channeling of proline metabolic intermediates may be a critical mechanism. One intermediate is pyrroline-5-carboxylate (P5C), which upon hydrolysis opens to glutamic semialdehyde (GSA). Recent structural and kinetic evidence indicate substrate channeling of P5C/ GSA occurs in the proline catabolic pathway between the proline dehydrogenase and P5C dehydrogenase active sites of bifunctional proline utilization A (PutA). Substrate channeling in PutA is proposed to facilitate the hydrolysis of P5C to GSA which is …
Glutaredoxin 1 Protects Dopaminergic Cells By Increased Protein Glutathionylation In Experimental Parkinson's Disease, Humberto Rodriguez-Rocha, Aracely Garcia Garcia, Laura Zavala-Flores, Sumin Li, Nandakumar Madayiputhiya, Rodrigo Franco
Glutaredoxin 1 Protects Dopaminergic Cells By Increased Protein Glutathionylation In Experimental Parkinson's Disease, Humberto Rodriguez-Rocha, Aracely Garcia Garcia, Laura Zavala-Flores, Sumin Li, Nandakumar Madayiputhiya, Rodrigo Franco
Department of Biochemistry: Faculty Publications
Aims: Chronic exposure to environmental toxicants, such as paraquat, has been suggested as a risk factor for Parkinson's disease (PD). Although dopaminergic cell death in PD is associated with oxidative damage, the molecular mechanisms involved remain elusive. Glutaredoxins (GRXs) utilize the reducing power of glutathione to modulate redox-dependent signaling pathways by protein glutathionylation. We aimed to determine the role of GRX1 and protein glutathionylation in dopaminergic cell death. Results: In dopaminergic cells, toxicity induced by paraquat or 6-hydroxydopamine (6-OHDA) was inhibited by GRX1 overexpression, while its knock-down sensitized cells to paraquat-induced cell death. Dopaminergic cell death was paralleled by protein …
Reducing Odorous Voc Emissions From Swine Manure Using Soybean Peroxidase And Peroxides, David B. Parker, Lingshuang Cai, Ki-Hyun Kim, Kristin E. Hales, Mindy J. Spiehs, Bryan L. Woodbury, Audrey L. Atkin, Kenneth Nickerson, Krista D. Patefield
Reducing Odorous Voc Emissions From Swine Manure Using Soybean Peroxidase And Peroxides, David B. Parker, Lingshuang Cai, Ki-Hyun Kim, Kristin E. Hales, Mindy J. Spiehs, Bryan L. Woodbury, Audrey L. Atkin, Kenneth Nickerson, Krista D. Patefield
School of Biological Sciences: Faculty Publications
The objective of the research was to determine the optimum application rates of soybean peroxidase (SBP) plus peroxide (SBPP) for reducing odorous VOC emissions from swine manure. Industrial-grade SBP was applied in combination with liquid hydrogen peroxide (H2O2) or powdered calcium peroxide (CaO2) to standard phenolic solutions and swine manure, and emissions were measured in a wind tunnel. The primary odorant in the untreated manure was 4-methylphenol, which accounted for 68–81% of the odor activity value. At the optimum application rate of SBPP (50 g L-1), 4-methylphenol emissions were reduced from the …
A Social Network Perspective On Measurements Of Dominance Hierarchies, Daizaburo Shizuka, David B. Mcdonald
A Social Network Perspective On Measurements Of Dominance Hierarchies, Daizaburo Shizuka, David B. Mcdonald
School of Biological Sciences: Faculty Publications
The hierarchical organization of dominance relations among animals has wide-ranging implications in social evolution. The structure of dominance relations has often been measured using indices of linearity (e.g. Landau’s h, Kendall’s K): the degree to which dominance relations adhere to a linear hierarchy. An alternative measure is the transitivity of dominance relations among sets of three players that all interact with each other, a measure we call triangle transitivity (ttri). Triangle transitivity and linearity are essentially equivalent when dominance relations of all dyads are known, but such complete observations are rare in empirical studies. Triangle transitivity …
Comparative Transitive And Temporal Orderliness In Dominance Networks, David Mcdonald, Daizaburo Shizuka
Comparative Transitive And Temporal Orderliness In Dominance Networks, David Mcdonald, Daizaburo Shizuka
School of Biological Sciences: Faculty Publications
Dominance is a social relation between a subordinate animal and the dominant to which it submits. Animal groups seem regularly to form dominance hierarchies in which dominance relations are transitive and stable, but comparative studies are rare. Dominance hierarchies can be formalized as social networks, with arrows (directed edges) pointing from dominant animals (nodes) to subordinates. Using this network perspective, we explored the orderliness of 40 published datasets for taxa from ants to elephants. To quantify orderliness, we used the triad census, a technique from sociology, that enumerates the proportion of orderly (transitive) triads (e.g., A dominates B and C, …
Family Dynamics Through Time: Brood Reduction Followed By Parental Compensation With Aggression And Favoritism, Daizaburo Shizuka, Bruce E. Lyon
Family Dynamics Through Time: Brood Reduction Followed By Parental Compensation With Aggression And Favoritism, Daizaburo Shizuka, Bruce E. Lyon
School of Biological Sciences: Faculty Publications
Parental food allocation in birds has long been a focal point for life history and parent–offspring conflict theories. In asynchronously hatching species, parents are thought to either adjust brood size through death of marginal offspring (brood reduction), or feed the disadvantaged chicks to reduce the competitive hierarchy (parental compensation). Here, we show that parent American coots (Fulica americana) practice both strategies by switching from brood reduction to compensation across time. Late-hatching chicks suffer higher mortality only for the first few days after hatching. Later, parents begin to exhibit parental aggression towards older chicks and each parent favors a …