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2011

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Kinari-Web: A Server For Protein Rigidity Analysis, Naomi Fox, Filip Jagodzinski, Yang Li, Ileana Streinu Jul 2011

Kinari-Web: A Server For Protein Rigidity Analysis, Naomi Fox, Filip Jagodzinski, Yang Li, Ileana Streinu

Computer Science: Faculty Publications

KINARI-Web is an interactive web server for performing rigidity analysis and visually exploring rigidity properties of proteins. It also provides tools for pre-processing the input data, such as selecting relevant chains from PDB files, adding hydrogen atoms and identifying stabilizing interactions. KINARI-Web offers a quick-start option for beginners, and highly customizable features for the experienced user. Chains, residues or atoms, as well as stabilizing constraints can be selected, removed or added, and the user can designate how different chemical interactions should be modeled during rigidity analysis. The enhanced Jmol-based visualizer allows for zooming in, highlighting or investigating different calculated rigidity …


Mitigating The Prosecutor's Dilemma In Light Of Melendez-Diaz: Live Two-Way Videoconferencing For Analysit Testimony Regarding Chemical Analysis, Amy Ma Jul 2011

Mitigating The Prosecutor's Dilemma In Light Of Melendez-Diaz: Live Two-Way Videoconferencing For Analysit Testimony Regarding Chemical Analysis, Amy Ma

Nevada Law Journal

No abstract provided.


Biofilter Media Characterization Using Water Sorption Isotherms, Guilherme Del Nero Maia, George B. Day, Richard S. Gates, Joseph L. Taraba Jul 2011

Biofilter Media Characterization Using Water Sorption Isotherms, Guilherme Del Nero Maia, George B. Day, Richard S. Gates, Joseph L. Taraba

Biosystems and Agricultural Engineering Faculty Publications

Compost material has been used extensively as a gas‐phase biofilter media for contaminant gas treatment in recent years. One of the biggest challenges in the use of this type of material is adequate control of compost moisture content and understanding its effect on the biofiltration process. The present work provides a methodology for characterization of biofilter media under low moisture conditions. Results indicated that low levels of equilibrium moisture content (EMC) were obtained for high levels of equilibrium relative humidity (ERH), i.e., 99% ERH produced EMC of approximately 20% (dry basis) at 25° C. Most bacteria struggle to survive in …


Effects Of Fatigue On The Balance Error Scoring System For Concussion Testing In Healthy And Previous Concussed Participants, Jason M. Graham Jul 2011

Effects Of Fatigue On The Balance Error Scoring System For Concussion Testing In Healthy And Previous Concussed Participants, Jason M. Graham

Master's Theses or Doctor of Nursing Practice

There has been a recent increase in the attention of concussions in the media and research world. One of the major factors that contribute to injuries including concussion is fatigue. This study has been designed to allow athletic trainers to decipher whether a potential balance insufficiency in an acutely concussed athlete is due to fatigue or the side affects of the concussion on postural stability. The study examined 30 college-aged athletes from a multitude of sports who had either sustained a concussion or never had a concussion. Participants were randomly grouped into one of three groups: non-concussed control group, non-concussed …


Hyperbaric Oxygen Therapy For Promoting Osseointegration Around Dental Implants In Heavy Smokers, Fardos N. Rizk, Nasser Shaheen Jul 2011

Hyperbaric Oxygen Therapy For Promoting Osseointegration Around Dental Implants In Heavy Smokers, Fardos N. Rizk, Nasser Shaheen

Dentistry

Objective: The purpose of this study is to evaluate the effect of hyperbaric oxygen (HBO) therapy on osseointegration of implants supporting mandibular overdenture in heavy smokers. Materials and Methods: Following two stage surgical protocol twelve completely edentulous male heavy smokers received implants placed bilaterally in the canine region to support mandibular overdenture. On the second day after the surgery patients were divided randomly into two equal groups. Patients of group I were placed on a protocol of five consecutive sessions of HBO therapy, while patients of group II received no therapy and served as control. Four months following the surgery …


Evaluating Mitochondrial Uncoupling Potentials Of A7e And Dnp In Saccharomyces Cerevisiae : Implications For Human Obesity, Roger Vaughan Jul 2011

Evaluating Mitochondrial Uncoupling Potentials Of A7e And Dnp In Saccharomyces Cerevisiae : Implications For Human Obesity, Roger Vaughan

Individual, Family, and Community Education ETDs

Obesity is one of the most prevalent maladies in the United States and is a major cause of preventable death. Weight loss supplements frequently claim uncoupling as a mechanism of action. Uncoupling agents could be used for weight loss because they disrupt mitochondrial metabolism thereby reducing adenosine triphosphate (ATP) yield. Consequently, metabolic efficiency diminishes increasing basal metabolic rate. 2,4-Dinitrophenol (DNP) successfully uncouples but was banned in 1938 because of a narrow window between efficacy and toxicity. PURPOSE: To measure the ability of a blend that reportedly contains 17-dihydroxy-delta-5-etiocholane-7-one and p-methylcarbonylethylphenol and other substances (A7E), a purported uncoupling agent, to interfere …


When Knowing Just Isn't Enough: Examining The Role Of Moral Emotions In Health Decision Making Using The Theory Of Planned Behavior, Kate Duangdao Jul 2011

When Knowing Just Isn't Enough: Examining The Role Of Moral Emotions In Health Decision Making Using The Theory Of Planned Behavior, Kate Duangdao

Department of Psychology: Dissertations, Theses, and Student Research

A proposed integrated Theory of Planned Behavior (TPB) model aimed to examine the role of moral emotions and two health outcomes: prosocial behaviors and smoking outcomes. Based on Tangney’s work with shame and guilt-proneness, it was expected that those more prone to guilt would engage in more prosocial behaviors and those more prone to shame would engage in more smoking behaviors. Prosocial behaviors were found to be negatively associated with smoking outcomes. However, results suggested that guilt and shame-proneness seem to function similarly in predicting behavioral outcomes. Components within the TPB were generally positively correlated with each health outcome, however …


Exploratory Analyses Of A Developmental Conceptualization Of Insight And Treatment Outcomes Of Individuals With Serious Mental Illness In Psychiatric Rehabilitation, Ashley R. Wynne Jul 2011

Exploratory Analyses Of A Developmental Conceptualization Of Insight And Treatment Outcomes Of Individuals With Serious Mental Illness In Psychiatric Rehabilitation, Ashley R. Wynne

Department of Psychology: Dissertations, Theses, and Student Research

The purpose of the present study was to further examine the relationship between adolescent psychiatric pathology and SMI by assessing the relationship between prior mental health services before the age of 18 and time of assessment on people’s insight into their illnesses. A secondary relationship between adolescent psychiatric pathology and functioning in a variety of domains before, during, and after treatment was assessed. Overall, there was an inconsistent pattern of results and partial support of hypotheses. The current study was a retrospective longitudinal study in which assessments were given to 308 participants in an inpatient psychiatric rehabilitation unit every 6 …


Throwing Precaution To The Wind: Nepa And The Deepwater Horizon Blowout, Sandra B. Zellmer, Joel A. Mintz, Robert Glicksman Jul 2011

Throwing Precaution To The Wind: Nepa And The Deepwater Horizon Blowout, Sandra B. Zellmer, Joel A. Mintz, Robert Glicksman

Faculty Law Review Articles

On April 20, 2010, British Petroleum's ("BP") Deepwater Horizon oil platform exploded, killing eleven workers. When the platform sank to the bottom of the Gulf of Mexico two days later, oil erupted out of the riser-a 5000-foot pipe connecting the platform to the well on the ocean floor. 2 Efforts to stem the flow failed when a safety device, the "blowout preventer," could not be activated.' Finally, after a number of attempts to stop the leak, BP capped the well on July 15.4 Nearly five million barrels of oil were released over the course of eighty-six days, making the Deepwater …


Beyond Structural Genomics: Computational Approaches For The Identification Of Ligand Binding Sites In Protein Structures, Dario Ghersi, Roberto Sanchez Jul 2011

Beyond Structural Genomics: Computational Approaches For The Identification Of Ligand Binding Sites In Protein Structures, Dario Ghersi, Roberto Sanchez

Interdisciplinary Informatics Faculty Publications

t Structural genomics projects have revealed structures for a large number of proteins of unknown function. Understanding the interactions between these proteins and their ligands would provide an initial step in their functional characterization. Binding site identification methods are a fast and cost-effective way to facilitate the characterization of functionally important protein regions. In this review we describe our recently developed methods for binding site identification in the context of existing methods. The advantage of energy-based approaches is emphasized, since they provide flexibility in the identifi- cation and characterization of different types of binding sites


Taylor: A Magazine For Taylor University Alumni, Parents And Friends (Summer 2011), Taylor University Jul 2011

Taylor: A Magazine For Taylor University Alumni, Parents And Friends (Summer 2011), Taylor University

The Taylor Magazine (1963-Present)

The Winter 2011 edition of Taylor Magazine, published by Taylor University in Upland, Indiana.


Finite-State Markov Chains Obey Benford’S Law, Arno Berger, Theodore P. Hill, Bahar Kaynar, Ad Ridder Jul 2011

Finite-State Markov Chains Obey Benford’S Law, Arno Berger, Theodore P. Hill, Bahar Kaynar, Ad Ridder

Research Scholars in Residence

A sequence of real numbers(xn)is Benford if the significands, i.e. the fraction parts in the floating-point representation of (xn), are distributed logarithmically. Similarly, a discrete-time irreducible and aperiodic finite-state Markov chain with probability transition matrix P and limiting matrix P* is Benford if every component of both sequences of matrices (Pn −P*)and (P n+1-Pn) is Benford or eventually zero. Using recent tools that established Benford behavior both for Newton’s method and for finite-dimensional linear maps, via the classical theories of uniform distribution modulo 1 and Perron-Frobenius, this paper …


Reward, Punishment, And Cooperation: A Meta-Analysis, Daniel Balliet, Laetitia B. Mulder, Paul A. M. Van Lange Jul 2011

Reward, Punishment, And Cooperation: A Meta-Analysis, Daniel Balliet, Laetitia B. Mulder, Paul A. M. Van Lange

Research Collection School of Social Sciences

How effective are rewards (for cooperation) and punishment (for noncooperation) as tools to promote cooperation in social dilemmas or situations when immediate self-interest and longer term collective interest conflict? What variables can promote the impact of these incentives? Although such questions have been examined, social and behavioral scientists provide different answers. To date, there is no theoretical and/or quantitative review of rewards and punishments as incentives for cooperation in social dilemmas. Using a novel interdependence-theoretic framework, we propose that rewards and punishments should both promote cooperation, and we identify 2 variables-cost of incentives and source of incentives-that are predicted to …


Annual Report Of Externally Funded Grants And Contracts, July 1, 2010 - June 30, 2011, Office Of Research And Sponsored Programs. Morehead State University. Jul 2011

Annual Report Of Externally Funded Grants And Contracts, July 1, 2010 - June 30, 2011, Office Of Research And Sponsored Programs. Morehead State University.

Office of Research and Sponsored Programs Reports and Publications

Annual Report of Externally Funded Grants and Contracts to July 1, 2010 - June 30, 2011.


Crosstalk Between Wnt And Rho Pathways In Ameloblast-Lineage Cells, Kate Shusterman Jul 2011

Crosstalk Between Wnt And Rho Pathways In Ameloblast-Lineage Cells, Kate Shusterman

PCOM Biomedical Studies Student Scholarship

Exposure to high levels of fluoride during tooth development will lead to mineralization defects and a decrease in enamel strength, known as enamel fluorosis. It has been proposed that fluoride may alter the cytoskeleton of ameloblasts, cells that secrete enamel during tooth development. This change is carried out through the Rho pathway, more specifically through RhoA. RhoA is stimulated by Wnt3a, a part of the Wnt pathway involved in regulation of cell proliferation and differentiation. The main component of the Wnt pathway, β-catenin, is expressed in dental epithelium and acts by linking cadherins to the actin cytoskeleton in cell adhesion. …


A Cultural Perspective On Motivation Factors Affecting Exhibition Participation, Young Ki Lee Jul 2011

A Cultural Perspective On Motivation Factors Affecting Exhibition Participation, Young Ki Lee

UNLV Theses, Dissertations, Professional Papers, and Capstones

With increasing global competitions, more opportunities transcending national boundaries may exist for the exhibition organizers and participants. This study offered an integrated approach to understanding how various motivation factors affect the participation in exhibition. The literature review included an introduction of push/pull motivation theories as one of the most representative motivation theories. The factor analysis of survey results supported the categorization of push/pull factors in exhibition industry. The paper concluded that the factor analysis procedures yielded the motivation factor dimensions with similar natures and four underlined motivation dimensions of exhibition participation were labeled. Furthermore, the cultural difference between Western and …


Unintended Consequences: Potential Downsides Of The Air Force's Conversion To Biofuels, Mark N. Goltz, Charles A. Bleckmann, Charles M. Mackay, Khai Vuong, Jerrod P. Mccomb Jul 2011

Unintended Consequences: Potential Downsides Of The Air Force's Conversion To Biofuels, Mark N. Goltz, Charles A. Bleckmann, Charles M. Mackay, Khai Vuong, Jerrod P. Mccomb

Faculty Publications

The desire to reduce US dependence on foreign energy, ongoing environmental concerns, and the rising cost of petroleum have sparked significant development of greener alternative and renewable energy sources such as alcohol-based biofuels. To address these issues, the Department of Defense DOD has moved to diminish its reliance on petroleum for fueling aircraft and ground equipment. The US Air Force, in alignment with DOD objectives, has initiated several goals for reducing its use of energy: (1) decrease the use of petroleum-based fuel by 2 percent annually for the vehicle fleet, (2) increase the use of alternative fuel in motor vehicles …


Traumatic Family Narratives In A Cosmopolitan World: Identity In American Third Generation Holocaust Survivors, Karen L. Burton Jul 2011

Traumatic Family Narratives In A Cosmopolitan World: Identity In American Third Generation Holocaust Survivors, Karen L. Burton

Dissertations, Theses and Capstone Projects (Full IR Collection)

Examines what role traumatic family narratives play in identity formation of subsequent generations. Considers transmission processes of memory and history. Specifically focuses on identity of adult (age 18-40) grandchildren of Holocaust survivors in America juxtaposed with identity of adult Jewish Americans whose families were not directly impacted by the Holocaust. Original research in the form of oral history is analyzed using sociological frameworks.


Strengthening Government Laboratory Science And Technology Programs: Some Thoughts For The Department Of Homeland Security, Samuel Musa, Richard Chait, Vincent Russo, Donna Back Jul 2011

Strengthening Government Laboratory Science And Technology Programs: Some Thoughts For The Department Of Homeland Security, Samuel Musa, Richard Chait, Vincent Russo, Donna Back

Defense and Technology Papers

This paper summarizes the second phase of a research and analysis project that stemmed from the initial work which provided DHS Science and Technology leadership with examples of practical approaches to risk-informed decisionmaking and metrics for program and project selection. The second phase was undertaken to provide additional relevant information to DHS as it seeks to strengthen its laboratory programs.


The Criminalization Of Peacemaking, Corporate Free Speech, And The Violence Of Interpretation: New Challenges To Cause Lawyering, Avi Brisman Jul 2011

The Criminalization Of Peacemaking, Corporate Free Speech, And The Violence Of Interpretation: New Challenges To Cause Lawyering, Avi Brisman

City University of New York Law Review

No abstract provided.


Instructors' Decisions That Integrate Inquiry Teaching Into Undergraduate Courses: How Do I Make This Fit?, Iris Alkaher, Erin Dolan Jul 2011

Instructors' Decisions That Integrate Inquiry Teaching Into Undergraduate Courses: How Do I Make This Fit?, Iris Alkaher, Erin Dolan

International Journal for the Scholarship of Teaching & Learning

In this qualitative study, we describe and characterize the pedagogical decisions that three college instructors made to mitigate challenges they faced as they taught by inquiry, as well as the rationale for their decisions and their perceptions of the efficacy of their decisions. We found that instructors made a range of decisions, including reorganizing course content and structure, adding more opportunities for and models of inquiry practice, adding more opportunities for feedback and assessment, and enhancing scaffolding of the inquiry. Notably, single instructional decisions had the capacity to mitigate multiple challenges. The instructors were satisfied with many of their decisions, …


Revealing Student Thinking About Experimental Design And The Roles Of Control Experiments, Jia Shi, Joy M. Power, Michael W. Klymkowsky Jul 2011

Revealing Student Thinking About Experimental Design And The Roles Of Control Experiments, Jia Shi, Joy M. Power, Michael W. Klymkowsky

International Journal for the Scholarship of Teaching & Learning

Well-designed “controls” distinguish experimental from non-experimental studies. Surprisingly, we found that a high percentage of students had difficulty identifying control experiments even after completing three university-level laboratory courses. To address this issue, we designed and ran a revised cell biology lab course in which students participated in weekly “experimental control exercises.” To measure student understanding of control experiments, we developed a set of assessment questions; these were given to students prior to and following completion of either a standard cell biology lab course or the revised cell biology lab course. Not unexpectedly, the results indicate that the revised course led …


Course-Embedded Mentoring For First-Year Students: Melding Academic Subject Support With Role Modeling, Psycho-Social Support, And Goal Setting - Ta, Jim Henry, Holly Bruland, Jennifer Sano-Franchini Jul 2011

Course-Embedded Mentoring For First-Year Students: Melding Academic Subject Support With Role Modeling, Psycho-Social Support, And Goal Setting - Ta, Jim Henry, Holly Bruland, Jennifer Sano-Franchini

International Journal for the Scholarship of Teaching & Learning

This article examines a mentoring initiative that embedded advanced students in first-year composition courses to mentor students to excel to the best of their abilities. Mentors attended all classes along with students and conducted many out-of-class individual conferences, documenting each of them using program-implemented work logs. Four hundred four first-year students provided end-of-term anonymous feedback on standardized forms, which were transcribed, digitized, and tabulated for analysis. Analysis showed that the mentoring was effective in providing the four constructs key to mentoring as identified by Nora and Crisp (2008): psychological/emotional support; support for setting goals and choosing a career path; academic …


Assessing The Pedagogical Impact Of The Vanth Engineering Research Center On Faculty And Postdoctoral Professionals, Monica F. Cox, James Cawthorne, Nathan Mcneill, Osman Cekic, Matthew Frye, Melissa J. Stacer Jul 2011

Assessing The Pedagogical Impact Of The Vanth Engineering Research Center On Faculty And Postdoctoral Professionals, Monica F. Cox, James Cawthorne, Nathan Mcneill, Osman Cekic, Matthew Frye, Melissa J. Stacer

International Journal for the Scholarship of Teaching & Learning

From 1999 to 2007, the Vanderbilt-Northwestern-Texas-Harvard/MIT (VaNTH) Engineering Research Center focused on improving bioengineering education through the applications of learning science, learning technology, and assessment and evaluation within the domain of bioengineering. This paper discusses results from a survey to explore the impact of the VaNTH experience on participating faculty and postdoctoral professionals. The results note that respondents differed in their familiarity with and applications of dimensions of the “How People Learn” framework and in their operationalization of effective instruction after their participation in VaNTH. Implications for teaching and learning with the context of a Center model are discussed along …


Legislative Control Of The Menhaden Fishery, Matthew G. Curtis Jul 2011

Legislative Control Of The Menhaden Fishery, Matthew G. Curtis

Law Student Publications

This article aims to highlight the unique stance taken by Virginia’s legislature and explain why this management is better left to the commission responsible for managing every other fishery in the Commonwealth. While there may not be a conclusive link between reduction industry practices and a decline in water quality, Virginia’s legislators should recognize the shift towards an ecosystem-based model as the most effective way to sustainably manage fisheries and all natural resources.


When Responsive Legislation Ignores The Forest For The Trees, Matthew G. Curtis Jul 2011

When Responsive Legislation Ignores The Forest For The Trees, Matthew G. Curtis

Law Student Publications

Large-scale financial disasters have resulted in equally large-scale overhauls of the system responsible for financial industry regulation. Choice over responding parties to these disasters is minimal, and the public inevitably looks to the government for assistance and explanation. The increasingly globalized economy causes any nationwide financial regulation in the U.S. to be felt throughout international markets. U.S. environmental regulation, while not felt immediately abroad, can have drastic impacts on business planning, environmental risk-management, and human rights in the developing world.


A Call For Mediated Solutions To Arctic Region Disputes, Bradley L. Roth Jul 2011

A Call For Mediated Solutions To Arctic Region Disputes, Bradley L. Roth

Cardozo Journal of International and Comparative Law

The note argues that the Arctic region has become a focal point of international competition due to climate change, with disputes over territorial, resource, and navigational rights among the Arctic Five (Canada, Denmark, Norway, Russia, and the United States). It advocates for a worldcentric mediation approach, emphasizing global sustainability and fairness, to resolve these disputes effectively while addressing the region's ecological sensitivity and the long-term sustainability of the planet.


Australian Maritime Law Update: 2010, Michael White, Alex Molloy Jul 2011

Australian Maritime Law Update: 2010, Michael White, Alex Molloy

Journal of Maritime Law and Commerce

No abstract provided.


Sequential Assembly Of Flagellar Radial Spokes, Dennis R. Diener, Pinfen Yang, Stefan Geimer, Douglas G. Cole, Winfield S. Sale, Joel L. Rosenbaum Jul 2011

Sequential Assembly Of Flagellar Radial Spokes, Dennis R. Diener, Pinfen Yang, Stefan Geimer, Douglas G. Cole, Winfield S. Sale, Joel L. Rosenbaum

Biological Sciences Faculty Research and Publications

The unicellular alga Chlamydomonas can assemble two 10 μm flagella in 1 h from proteins synthesized in the cell body. Targeting and transporting these proteins to the flagella are simplified by preassembly of macromolecular complexes in the cell body. Radial spokes are flagellar complexes that are partially assembled in the cell body before entering the flagella. On the axoneme, radial spokes are “T” shaped structures with a head of five proteins and a stalk of 18 proteins that sediment together at 20S. In the cell body, radial spokes are partially assembled; about half of the radial spoke proteins (RSPs) form …


Using Nanotechnology To Detect Nerve Agents, Mark N. Goltz, Dong-Shik Kim, Leeann Racz Jul 2011

Using Nanotechnology To Detect Nerve Agents, Mark N. Goltz, Dong-Shik Kim, Leeann Racz

Faculty Publications

Nanotechnology has opened a wide range of opportunities having potential impacts in areas as diverse as medicine and consumer products. In collaboration with researchers at the University of Toledo UT, Air Force Institute of Technology AFIT scientists are exploring the possibility of using a nanoscale organic matrix to detect organophosphate OP nerve agents. Current techniques for detecting OP compounds are expensive and time consuming. Developing a nanoscale organic matrix sensor would allow for direct, real-time sensing under field conditions. This article describes the science behind such a sensor and its possible applications. High-performance sensors are needed to protect Soldiers and …