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2011

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Use Of Cranial Characters In Taxonomy Of The Minnesota Wolf (Canis Sp.), L. David Mech, Ronald M. Nowak, Sanford Weisberg Jan 2011

Use Of Cranial Characters In Taxonomy Of The Minnesota Wolf (Canis Sp.), L. David Mech, Ronald M. Nowak, Sanford Weisberg

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Minnesota wolves (Canis sp.) sometimes are reported to have affinity to a small, narrow-skulled eastern form (Canis lupus lycaon Schreber, 1775) and sometimes to a larger, broader western form (Canis lupus nubilus Say, 1823). We found that pre-1950 Minnesota wolf skulls were similar in size to those of wolves from southeastern Ontario and smaller than those of western wolves. However, Minnesota wolf skulls during 1970–1976 showed a shift to the larger, western form. Although Minnesota skull measurements after 1976 were unavailable, rostral ratios from 1969 through 1999 were consistent with hybridization between the smaller eastern wolf and …


Gray Wolf (Canis Lupus) Movements And Behavior Around A Kill Site And Implications For Gps Collar Studies, L. David Mech Jan 2011

Gray Wolf (Canis Lupus) Movements And Behavior Around A Kill Site And Implications For Gps Collar Studies, L. David Mech

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Global Positioning System (GPS) radio-collars are increasingly used to estimate Gray Wolf (Canis lupus) kill rates. In interpreting results from this technology, researchers make various assumptions about wolf behavior around kills, yet no detailed description of this behavior has been published. This article describes the behavior of six wolves in an area of constant daylight during 30 hours, from when the pack killed a Muskox (Ovibos moschatus) calf and yearling on Ellesmere Island, Nunavut, Canada, to when they abandoned the kill remains. Although this is only a single incident, it demonstrates one possible scenario of pack …


Movements Of Wolves At The Northern Extreme Of The Species’ Range, Including During Four Months Of Darkness, L. David Mech, H. Dean Cluff Jan 2011

Movements Of Wolves At The Northern Extreme Of The Species’ Range, Including During Four Months Of Darkness, L. David Mech, H. Dean Cluff

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Information about wolf (Canis lupus) movements anywhere near the northern extreme of the species’ range in the High Arctic (.75uN latitude) are lacking. There, wolves prey primarily on muskoxen (Ovibos moschatus) and must survive 4 months of 24 hr/day winter darkness and temperatures reaching 253 C. The extent to which wolves remain active and prey on muskoxen during the dark period are unknown, for the closest area where information is available about winter wolf movements is .2,250 km south. We studied a pack of $20 wolves on Ellesmere Island, Nunavut, Canada (80°N latitude) from July 2009 …


Parsing Demographic Effects Of Canine Parvovirus On A Minnesota Wolf Population, L. David Mech, Sagar M. Goyal Jan 2011

Parsing Demographic Effects Of Canine Parvovirus On A Minnesota Wolf Population, L. David Mech, Sagar M. Goyal

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

We examined 35 years of relationships among wolf (Canis lupus) pup survival, population change and canine parvovirus (CPV) seroprevalence in northeastern Minnesota to determine when CPV exerted its strongest effects. Using correlation analysis of data from five periods of 7-years each from 1973 through 2007, we learned that the strongest effect of CPV on pup survival (r = -0.73) and on wolf population change (r = -0.92) was during 1987 to 1993. After that, little effect was documented despite a mean CPV seroprevalence from 1994 of 2007 of 70.8% compared with 52.6% during 1987 to 1993. We …


Problems With Studying Wolf Predation On Small Prey In Summer Via Global Positioning System Collars, Vicente Palacios, L. David Mech Jan 2011

Problems With Studying Wolf Predation On Small Prey In Summer Via Global Positioning System Collars, Vicente Palacios, L. David Mech

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

We attempted to study predation on various-sized prey by a male and female wolf (Canis lupus) with global positioning system (GPS) collars programmed to acquire locations every 10 min in the Superior National Forest of Minnesota. During May to August 2007, we investigated 147 clusters of locations (31% of the total) and found evidence of predation on a white-tailed deer (Odocoileus virginianus) fawn and yearling, a beaver (Castor canadensis), ruffed grouse (Bonasa umbellus), and fisher (Martes pennanti) and scavenging on a road-killed deer and other carrion. However, we missed finding …


Heat Waves Measured With Modis Land Surface Temperature Data Predict Changes In Avian Community Structure, Thomas P. Albright, Anna M. Pidgeon, Chadwick D. Rittenhouse, Murray K. Clayton, Curtis H. Flather, Patrick D. Culbert, Volker C. Radeloff Jan 2011

Heat Waves Measured With Modis Land Surface Temperature Data Predict Changes In Avian Community Structure, Thomas P. Albright, Anna M. Pidgeon, Chadwick D. Rittenhouse, Murray K. Clayton, Curtis H. Flather, Patrick D. Culbert, Volker C. Radeloff

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Heat waves are expected to become more frequent and severe as climate changes, with unknown consequences for biodiversity. We sought to identify ecologically-relevant broad-scale indicators of heat waves based on MODIS land surface temperature (LST) and interpolated air temperature data and assess their associations with avian community structure. Specifically, we asked which data source, time periods, and heat wave indices best predicted changes in avian abundance and species richness. Using mixed effects models, we analyzed associations between these indices and data from the North American Breeding Bird Survey in the central United States between 2000 and 2007 in four ecoregions …


Forest Structure And Aboveground Biomass In The Southwestern United States From Modis And Misr, Mark Chopping, Crystal B. Schaaf, Feng Zhao, Zhuosen Wang, Anne Nolin, Gretchen G. Moisen, John V. Martonchik, Michael Bull Jan 2011

Forest Structure And Aboveground Biomass In The Southwestern United States From Modis And Misr, Mark Chopping, Crystal B. Schaaf, Feng Zhao, Zhuosen Wang, Anne Nolin, Gretchen G. Moisen, John V. Martonchik, Michael Bull

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Red band bidirectional reflectance factor data from the NASA MODerate resolution Imaging Spectroradiometer (MODIS) acquired over the southwestern United States were interpreted through a simple geometric–optical (GO) canopy reflectance model to provide maps of fractional crown cover (dimensionless), mean canopy height (m), and aboveground woody biomass (Mg ha−1) on a 250 m grid. Model adjustment was performed after dynamic injection of a background contribution predicted via the kernel weights of a bidirectional reflectance distribution function (BRDF) model. Accuracy was assessed with respect to similar maps obtained with data from the NASA Multiangle Imaging Spectroradiometer (MISR) and to contemporaneous …


Thermogravimetric Analysis Of Forest Understory Grasses, Thomas Elder, John S. Kush, Sharon M. Hermann Jan 2011

Thermogravimetric Analysis Of Forest Understory Grasses, Thomas Elder, John S. Kush, Sharon M. Hermann

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Forest understory grasses are of significance in the initiation, establishment and maintenance of fire, whether used as a management tool or when occurring as wildfire. The fundamental thermal properties of such grasses are critical to their behavior in fire situations and have been investigated in the current work by the application of thermogravimetric analysis (TGA). TGA was performed in nitrogen and air, over a range of heating rates, allowing for the determination of activation energies and temperatures associated with the degradation of hemicelluloses and cellulose. Of particular interest is the behavior of Imperata cylindrica (cogongrass) an invasive species in the …


Detection Of Autoreactive Cd4 T Cells Using Major Histocompatibility Complex Class Ii Dextramers, Chandirasegaran Massilamany, Bijaya Upadhyaya, Arunakumar Gangaplara, Charles Kuszynski, Jay Reddy Jan 2011

Detection Of Autoreactive Cd4 T Cells Using Major Histocompatibility Complex Class Ii Dextramers, Chandirasegaran Massilamany, Bijaya Upadhyaya, Arunakumar Gangaplara, Charles Kuszynski, Jay Reddy

Nebraska Center for Virology: Faculty Publications

Background: Tetramers are useful tools to enumerate the frequencies of antigen-specific T cells. However, unlike CD8 T cells, CD4 T cells - especially self-reactive cells - are challenging to detect with major histocompatibility complex (MHC) class II tetramers because of low frequencies and low affinities of their T cell receptors to MHCpeptide complexes. Here, we report the use of fluorescent multimers, designated MHC dextramers that contain a large number of peptide-MHC complexes per reagent.

Results: The utility of MHC dextramers was evaluated in three autoimmune disease models: 1) proteolipid protein (PLP) 139-151-induced experimental autoimmune encephalomyelitis in SJL/J (H-2 …


Tetherin Inhibits Prototypic Foamy Virus Release, Fengwen Xu, Juan Tan, Ruikang Liu, Dan Xu, Yue Li, Yunqi Geng, Chen Liang, Wentao Qiao Jan 2011

Tetherin Inhibits Prototypic Foamy Virus Release, Fengwen Xu, Juan Tan, Ruikang Liu, Dan Xu, Yue Li, Yunqi Geng, Chen Liang, Wentao Qiao

Nebraska Center for Virology: Faculty Publications

Background: Tetherin (also known as BST-2, CD317, and HM1.24) is an interferon- induced protein that blocks the release of a variety of enveloped viruses, such as retroviruses, filoviruses and herpesviruses. However, the relationship between tetherin and foamy viruses has not been clearly demonstrated.

Results: In this study, we found that tetherin of human, simian, bovine or canine origin inhibits the production of infectious prototypic foamy virus (PFV). The inhibition of PFV by human tetherin is counteracted by human immunodeficiency virus type 1 (HIV-1) Vpu. Furthermore, we generated human tetherin transmembrane domain deletion mutant (delTM), glycosyl phosphatidylinositol (GPI) anchor …


Pathogenicity And Rapid Growth Kinetics Of Feline Immunodeficiency Virus Are Linked To 3' Elements, Jesse Thompson, Martha Macmillan, Karen Boegler, Charles Wood, John H. Elder, Sue Vandewoude Jan 2011

Pathogenicity And Rapid Growth Kinetics Of Feline Immunodeficiency Virus Are Linked To 3' Elements, Jesse Thompson, Martha Macmillan, Karen Boegler, Charles Wood, John H. Elder, Sue Vandewoude

Nebraska Center for Virology: Faculty Publications

Chimeric viruses constructed between a highly pathogenic Feline Immunodeficiency Virus isolate (FIV-C36) and a less pathogenic but neurotropic strain (FIV-PPR) have been used to map viral genetic determinants of in vivo pathogenicity. Chimeric virus FIV-PCenv, which contains FIV-C36 genome from the 39 region of pol to upstream of the 3'LTR on an FIV-PPR backbone, was previously shown to be replication-competent in vivo, inducing altered CD4+ T-cell and neutrophil profiles intermediate between parental strains following a delay in viral replication during initial infection. Examination of FIV-PCenv proviral sequences recovered at week 11 post-infection revealed two changes compared to initial …


Robust Rnai-Based Resistance To Mixed Infection Of Three Viruses In Soybean Plants Expressing Separate Short Hairpins From A Single Transgene, Xiuchun Zhang, Shirley Sato, Xiaohong Ye, Anne E. Dorrance, Thomas Jack Morris, Thomas E. Clemente, Feng Qu Jan 2011

Robust Rnai-Based Resistance To Mixed Infection Of Three Viruses In Soybean Plants Expressing Separate Short Hairpins From A Single Transgene, Xiuchun Zhang, Shirley Sato, Xiaohong Ye, Anne E. Dorrance, Thomas Jack Morris, Thomas E. Clemente, Feng Qu

Nebraska Center for Virology: Faculty Publications

Transgenic plants expressing double-stranded RNA (dsRNA) of virus

origin have been previously shown to confer resistance to virus infections

through the highly conserved RNA-targeting process termed RNA silencing

or RNA interference (RNAi). In this study we applied this strategy to

soybean plants and achieved robust resistance to multiple viruses with a

single dsRNA-expressing transgene. Unlike previous reports that relied

on the expression of one long inverted repeat (IR) combining sequences

of several viruses, our improved strategy utilized a transgene designed to

express several shorter IRs. Each of these short IRs contains highly conserved

sequences of one virus, forming dsRNA of …


Kaposi Sarcoma-Associated Herpesvirus Degrades Cellular Toll-Interleukin-1 Receptor Domain-Containing Adaptor-Inducing Β-Interferon (Trif), Humera Ahmad, Rachel Gubbels, Florencia Meyer, Thomas Waterbury, Rongtuan Lin, Luwen Zhang Jan 2011

Kaposi Sarcoma-Associated Herpesvirus Degrades Cellular Toll-Interleukin-1 Receptor Domain-Containing Adaptor-Inducing Β-Interferon (Trif), Humera Ahmad, Rachel Gubbels, Florencia Meyer, Thomas Waterbury, Rongtuan Lin, Luwen Zhang

Nebraska Center for Virology: Faculty Publications

Kaposi sarcoma-associated herpesvirus (KSHV) is a human ƴ - herpesvirus associated with several human malignancies. The replication and transcription activator (RTA) is necessary and sufficient for the switch from KSHV latency to lytic replication. Toll-interleukin-1 receptor (TIR) domain-containing adaptorinducing β-interferon (TRIF, also called TIR-domain-containing adaptor molecule-1 (TICAM-1)) is a signaling adaptor molecule that is critically involved in the Toll-like receptor 3 (TLR-3) and TLR-4 signaling pathways for type I interferon (IFN) production, a key component of innate immunity against microbial infection. In this report, we find a new mechanism by which RTA blocks innate immunity by targeting cellular TRIF. RTA …


Human Papillomavirus 16 Variants From Zambian Women With Normal Pap Smears, Yan Jun Lei, Kgomotso Makhaola, Daraporn Pittayakhajonwut, Charles Wood, Peter C. Angeletti Jan 2011

Human Papillomavirus 16 Variants From Zambian Women With Normal Pap Smears, Yan Jun Lei, Kgomotso Makhaola, Daraporn Pittayakhajonwut, Charles Wood, Peter C. Angeletti

Nebraska Center for Virology: Faculty Publications

Human papillomavirus (HPV) type 16 is the most prevalent high-risk viral genotype associated with cervical cancer. Six distinct phylogenetic clusters of HPVs have been identified and are distributed differently across five continents. HPV16 DNA was extracted from cervico-lavage samples from women with normal pap smears. The LCR regions were amplified in triplicate, cloned, sequenced, and analyzed from a total of 11 recovered HPV16 positive samples [Ng’andwe et al. (2007): BMC Infect Dis 7:77] were analyzed for sequence variation. The HPV16 LCR variants were assessed for promoter activity by use of a luciferase reporter gene. Six novel HPV16 variants with nucleotide …


Hiv-1 Clade B And C Isolates Exhibit Differential Replication: Relevance To Macrophage-Mediated Neurotoxicity, Agnes A. Constantino, Yunlong Huang, Hong Zhang, Charles Wood, Jialin C. Zheng Jan 2011

Hiv-1 Clade B And C Isolates Exhibit Differential Replication: Relevance To Macrophage-Mediated Neurotoxicity, Agnes A. Constantino, Yunlong Huang, Hong Zhang, Charles Wood, Jialin C. Zheng

Nebraska Center for Virology: Faculty Publications

HIV-associated neurocognitive disorders (HAND) continue to be a consequence of HIV-1 infection among clade B-infected individuals. In contrast, the incidence of severe neurological impairment is lower among clade C-infected patients in regions of Sub-Saharan Africa and India. Biological aspects such as replication, cytopathicity, inflammatory response, and neurotoxicity unique to each clade influence neuropathogenicity and ultimately affect the clinical outcome of the disease. We hypothesize that productive infection by clade C isolates leads to macrophagemediated neurotoxicity, although to a lesser extent than clade B isolates. Using a panel of primary isolates of clades B and C we demonstrated that clade B …


The Zambia Children's Ks-Hhv8 Study: Rationale, Study Design, And Study Methods, Veenu Minhas, Kay L. Crabtree, Ann Chao, Janet M. Wojcicki, Adrian M. Sifuniso, Catherine Nkonde, Chipepo Kankasa, Charles D. Mitchell, Charles Wood Jan 2011

The Zambia Children's Ks-Hhv8 Study: Rationale, Study Design, And Study Methods, Veenu Minhas, Kay L. Crabtree, Ann Chao, Janet M. Wojcicki, Adrian M. Sifuniso, Catherine Nkonde, Chipepo Kankasa, Charles D. Mitchell, Charles Wood

Nebraska Center for Virology: Faculty Publications

The epidemic of human immunodeficiency virus in Zambia has led to a dramatic rise in the incidence of human herpesvirus-8 (HHV-8)–associated Kaposi's sarcoma in both adults and children. However, there is a paucity of knowledge about the routes of HHV-8 transmission to young children. The Zambia Children's KS-HHV8 Study, a large, prospective cohort study in Lusaka, Zambia, was launched in 2004 to investigate the role of household members as a source of HHV-8 infection in young children and social behaviors that may modify the risk of HHV-8 acquisition. This cohort is distinct from other epidemiologic studies designed to investigate HHV-8 …


Prevalence Of Human Herpesvirus 8 (Hhv8) And Hepatitis C Virus (Hcv) In A Rural Community With High Risk For Blood Borne Infections In Central China, Tiejun Zhang, Na He, Yingying Ding, Kay L. Crabtree, Veenu Minhas, Charles Wood Jan 2011

Prevalence Of Human Herpesvirus 8 (Hhv8) And Hepatitis C Virus (Hcv) In A Rural Community With High Risk For Blood Borne Infections In Central China, Tiejun Zhang, Na He, Yingying Ding, Kay L. Crabtree, Veenu Minhas, Charles Wood

Nebraska Center for Virology: Faculty Publications

Former illegal blood donation in the past decade has caused HIV outbreaks in some rural areas in China. Other HIV associated virus infections, such as human herpesvirus 8 (HHV8) in such areas are still not well defined. In order to explore HHV8 and HCV seroprevalence and potential risk factors in such areas, a cross-sectional study with 305 HIV positive and 315 HIV negative subjects recruited from a rural county in Shanxi province was conducted, where illegal blood collection was reported. Interview questionnaires and serum testing were carried out with these participants. HCV and HHV8 seroprevalence were found to be higher …


Comparison Of Adenoviruses As Oncolytics And Cancer Vaccines In An Immunocompetent B Cell Lymphoma Model, Eric A. Weaver, Christopher Y. Chen, Shannon M. May, Mary E. Barry, Michael A. Barry Jan 2011

Comparison Of Adenoviruses As Oncolytics And Cancer Vaccines In An Immunocompetent B Cell Lymphoma Model, Eric A. Weaver, Christopher Y. Chen, Shannon M. May, Mary E. Barry, Michael A. Barry

Nebraska Center for Virology: Faculty Publications

We have screened human adenoviruses (Ads) for oncolytic activity against a variety of mouse and hamster cell lines and have found a number that are susceptible to a variety of Ad serotypes. A20 lymphoma is derived from BALB/c mice and is susceptible to infection and killing by a variety of human Ads. A20 is also a suitable cancer vaccine model, because these cells express a unique immunoglobulin variable region that can be targeted by vaccination. To compare Ads as cancer vaccines versus Ads as oncolytics, A20 tumors were initiated in im- munocompetent BALB/c mice. Mice immunized with first-generation Ad5 expressing …


Advances And Future Challenges In Adenoviral Vector Pharmacology And Targeting, Reeti Khare, Christopher Y. Chen, Eric A. Weaver, Michael A. Barry Jan 2011

Advances And Future Challenges In Adenoviral Vector Pharmacology And Targeting, Reeti Khare, Christopher Y. Chen, Eric A. Weaver, Michael A. Barry

Nebraska Center for Virology: Faculty Publications

Adenovirus is a robust vector for therapeutic applications, but its use is limited by our understanding of its complex in vivo pharmacology. In this review we describe the necessity of identifying its natural, widespread, and multi-faceted interactions with the host since this information will be crucial for efficiently redirecting virus into target cells. In the rational design of vectors, the notion of overcoming a sequence of viral “sinks” must be combined with re-targeting to target populations with capsid as well as shielding the vectors from pre-existing or toxic immune responses. It must also be noted that most known adenoviral pharmacology …


Species D Adenoviruses As Oncolytics Against B-Cell Cancers, Christopher Y. Chen, Julien S. Senac, Eric A. Weaver, Shannon M. May, Diane F. Jelinek, Philip Greipp, Thomas Witzig, Michael A. Barry Jan 2011

Species D Adenoviruses As Oncolytics Against B-Cell Cancers, Christopher Y. Chen, Julien S. Senac, Eric A. Weaver, Shannon M. May, Diane F. Jelinek, Philip Greipp, Thomas Witzig, Michael A. Barry

Nebraska Center for Virology: Faculty Publications

Purpose: Oncolytic viruses are self-amplifying anticancer agents that make use of the natural ability of viruses to kill cells. Adenovirus serotype 5 (Ad5) has been extensively tested against solid cancers, but less so against B-cell cancers because these cells do not generally express the coxsackie and adenoviral receptor (CAR). To determine whether other adenoviruses might have better potency, we "mined" the adenovirus virome of 55 serotypes for viruses that could kill B-cell cancers.

Experimental Design: Fifteen adenoviruses selected to represent Ad species B, C, D, E, and F were tested in vitro against cell lines and primary patient B-cell cancers …


Missouri River Recovery Program Emergent Sandbar Habitat Annual Adaptive Management Report, Year 1, 2010) Jan 2011

Missouri River Recovery Program Emergent Sandbar Habitat Annual Adaptive Management Report, Year 1, 2010)

United States Army Corps of Engineers, Omaha District

This Adaptive Management (AM) Report for Emergent Sandbar Habitat (ESH) represents the first complete iteration within the draft AM strategy being implemented for the interior least terns (Sternula antillarum) and piping plovers (Charadrius melodus) within the Missouri River Mainstem System based on the 2003 Amended Biological Opinion (BiOp). Please refer to the ESH AM Strategy - Appendix H of the Draft ESH Programmatic Environmental Impact Statement (PEIS) – and the Missouri River Recovery Program (MRRP) AM Process Framework for detailed background information on the overall scope and approach of this effort. Also note that as more …


Missouri River Recovery Program: Adaptive Management Process Framework, Joe Bonneau, Tim Fleeger, Craig Flemming, Carol Hale, Mike Anderson, Kate Buenau, Tim L. Hiller, Doug Latka, Ron Thom, Drew Tyre, Steve Fischer, Casey Kruse, Brad Thompson Jan 2011

Missouri River Recovery Program: Adaptive Management Process Framework, Joe Bonneau, Tim Fleeger, Craig Flemming, Carol Hale, Mike Anderson, Kate Buenau, Tim L. Hiller, Doug Latka, Ron Thom, Drew Tyre, Steve Fischer, Casey Kruse, Brad Thompson

United States Army Corps of Engineers, Omaha District

The purpose of this Adaptive Management (AM) Process Framework is to describe the AM process for the U.S. Army Corps of Engineers (USACE) Missouri River Recovery Program (MRRP) and explain how AM principles will be used in the MRRP to reduce uncertainty and ensure that Program objectives are achieved over time. The AM Process Framework is intended to be broad so that it can be applied to all aspects of the MRRP and be understood by a diverse audience of managers, federal and state agencies, scientists, engineers, the Missouri River Recovery Implementation Committee (MRRIC), stakeholders, Tribes, and the public.


Research And Development In The U.S. Army Corps Of Engineers: Improving The Common Stock Of Knowledge, Damon Manders Jan 2011

Research And Development In The U.S. Army Corps Of Engineers: Improving The Common Stock Of Knowledge, Damon Manders

United States Army Corps of Engineers, Omaha District

When Charles A. Camillo, the U.S. Army Corps of Engineers Mississippi Valley Division and U.S. Army Engineer Research and Development Center (ERDC) historian, approached me in 2007 about the possibility of working on a history of ERDC, I was excited about the potential of the project. He outlined a volume that would cover scientific research in engineering, hydraulics, computer science, topography, environmental science, and other technical fields. As one raised by an engineer in a town with one of the highest concentrations of physicists, engineers, and computer developers in the country — Huntsville, Alabama — and as someone who had …


Short-Term Facilitation May Stabilize Parametric Working Memory Trace, Vladimir Itskov, David Hansel, Misha Tsodyks Jan 2011

Short-Term Facilitation May Stabilize Parametric Working Memory Trace, Vladimir Itskov, David Hansel, Misha Tsodyks

Department of Mathematics: Faculty Publications

Networks with continuous set of attractors are considered to be a paradigmatic model for parametric working memory (WM), but require fine tuning of connections and are thus structurally unstable. Here we analyzed the network with ring attractor, where connections are not perfectly tuned and the activity state therefore drifts in the absence of the stabilizing stimulus. We derive an analytical expression for the drift dynamics and conclude that the network cannot function as WM for a period of several seconds, a typical delay time in monkey memory experiments. We propose that short-term synaptic facilitation in recurrent connections significantly improves the …


Assessment Of Shape Memory Alloy Stent Deployment In A Stenosed Artery, Shijia Zhao, Linxia Gu, Stacey R. Froemming Jan 2011

Assessment Of Shape Memory Alloy Stent Deployment In A Stenosed Artery, Shijia Zhao, Linxia Gu, Stacey R. Froemming

Department of Mechanical and Materials Engineering: Faculty Publications

Purpose — Shape memory alloy (SMA) stents have been used increasingly for the treatment of complex arterial occlusions. There is an immediate need to quantify the mechanical performance of SMA stents to open occluded arteries.
Methods — The stent crimping and expanding process was assessed through both numerical modeling and in-vitro studies. The implantation of a SMA stent in curved arteries with eccentric stenosis were simulated to evaluate the effect of artery curvature on arterial mechanics.
Results — The crimping process stored a considerable amount of strain energy in the stent, which were then released through self-expansion until a balance …


Comparative Analysis Of The Biaxial Mechanical Behavior Of Carotid Wall Tissue And Biological And Synthetic Materials Used For Carotid Patch Angioplasty, Alexey Kamenskiy, Iraklis I. Pipinos, Jason N. Mactaggart, Syed A. Jaffar Kazmi, Yuris A. Dzenis Jan 2011

Comparative Analysis Of The Biaxial Mechanical Behavior Of Carotid Wall Tissue And Biological And Synthetic Materials Used For Carotid Patch Angioplasty, Alexey Kamenskiy, Iraklis I. Pipinos, Jason N. Mactaggart, Syed A. Jaffar Kazmi, Yuris A. Dzenis

Department of Mechanical and Materials Engineering: Faculty Publications

Patch angioplasty is the most common technique used for the performance of carotid endarterectomy. A large number of patching materials are available for use while new materials are being continuously developed. Surprisingly little is known about the mechanical properties of these materials and how these properties compare with those of the carotid artery wall. Mismatch of the mechanical properties can produce mechanical and hemodynamic effects that may compromise the long-term patency of the endarterectomized arterial segment. The aim of this paper was to systematically evaluate and compare the biaxial mechanical behavior of the most commonly used patching materials. We compared …


Frequency Shifts In Plate Crystal Resonators Induced By Electric, Magnetic, Or Mechanical Fields In Surface Films, Nan Liu, J.S. Yang, Yuantai Hu, Xuedong Chen, Wei Jiang Jan 2011

Frequency Shifts In Plate Crystal Resonators Induced By Electric, Magnetic, Or Mechanical Fields In Surface Films, Nan Liu, J.S. Yang, Yuantai Hu, Xuedong Chen, Wei Jiang

Department of Mechanical and Materials Engineering: Faculty Publications

We study frequency shifts in plate crystal resonators with surface films. The films are multiphysical, including the effects of inertia, stiffness, intrinsic stress, piezoelectric coupling, and piezomagnetic coupling. Mindlin’s two-dimensional equations for a crystal plate with two elastic surface films are generalized to include the multiphysical effects of the films. They are used to study thickness-shear vibrations of a rotated Y-cut quartz plate with initial fields resulting from the mechanical, electric, and magnetic fields in the surface films. Frequency shifts caused by the initial fields are calculated and examined. Results show that plate crystal resonators with multiphysical surface films may …


Use Of Environmental Scanning Electron Microscopy For In Situ Observation Of Interaction Of Cells With Micro- And Nanoprobes, Alexander Goponenko, B. J. Boyle, K. I. Jahan, Maxim V. Gerashchenko, Dmitri E. Fomenko, Vadim N. Gladyshev, Yuris A. Dzenis Jan 2011

Use Of Environmental Scanning Electron Microscopy For In Situ Observation Of Interaction Of Cells With Micro- And Nanoprobes, Alexander Goponenko, B. J. Boyle, K. I. Jahan, Maxim V. Gerashchenko, Dmitri E. Fomenko, Vadim N. Gladyshev, Yuris A. Dzenis

Department of Mechanical and Materials Engineering: Faculty Publications

Precision intracellular sensing, probing and manipulation offer unprecedented opportunities for advances in biological sciences. Next-generation ultra-fine probes will be capable of targeting individual cell organelles. Development of such probes as well as probes capable of penetrating through tough cell walls requires detailed knowledge of cell-probe interaction. This Letter evaluated the applicability of environmental scanning electron microscopy (ESEM) for cell and cell-probe interaction imaging. Several types of cells (plant and yeast cells as well as mouse spermatozoa) were successfully imaged in their natural state, with mouse spermatozoa observed by ESEM for the first time. Computerized stage applied to image was tough …


Control Of Glucosylceramide Production And Morphogenesis By The Bar1 Ceramide Synthase In Fusarium Graminearum, William B. Rittenour, Ming Chen, Edgar B. Cahoon, Steven D. Harris Jan 2011

Control Of Glucosylceramide Production And Morphogenesis By The Bar1 Ceramide Synthase In Fusarium Graminearum, William B. Rittenour, Ming Chen, Edgar B. Cahoon, Steven D. Harris

Department of Plant Pathology: Faculty Publications

The contribution of plasma membrane proteins to the virulence of plant pathogenic fungi is poorly understood. Accordingly, the objective of this study was to characterize the acyl-CoA dependent ceramide synthase Bar1 (previously implicated in plasma membrane organization) in the wheat pathogen Fusarium graminearum. The role of Bar1 in mediating cell membrane organization was confirmed as DBAR1 mutants failed to display a distinct sterol-rich domain at the hyphal tip. The DBAR1 mutants were non-pathogenic when inoculated onto wheat heads, and their in vitro growth also was severely perturbed. DBAR1 mutants were incapable of producing perithecia (sexual fruiting structures) and only produced …


The Sugar Sensor, Trehalose-6-Phosphate Synthase (Tps1), Regulates Primary And Secondary Metabolism During Infection By The Rice Blast Fungus: Will Magnaporthe Oryzae’S “Sweet Tooth” Become Its “Achilles’ Heel”?, Jesse Fernandez, Richard Wilson Jan 2011

The Sugar Sensor, Trehalose-6-Phosphate Synthase (Tps1), Regulates Primary And Secondary Metabolism During Infection By The Rice Blast Fungus: Will Magnaporthe Oryzae’S “Sweet Tooth” Become Its “Achilles’ Heel”?, Jesse Fernandez, Richard Wilson

Department of Plant Pathology: Faculty Publications

Rice blast disease is considered one of the most serious diseases of cultivated rice and is mediated by the causal agent, Magnaporthe oryzae. During infection, dome-shaped fungal cells, called appressoria, form on the surface of the leaf and generate turgor through the accumulation of glycerol. This enormous pressure is directed down onto a thin penetration hypha emerging from the base of the cell, forcing it through the surface of the rice leaf and allowing fungal colonization of the plant interior. The non-reducing disaccharide, trehalose, is present in conidia of M. oryzae and is mobilized during appressorium formation. The first …