Digital Commons Network^™

Reprogrammed Transcriptome In Rhesus-Bovine Interspecies Somatic Cell Nuclear Transfer Embryos, Kai Wang, Hasan H. Otu, Ying Chen, Young Lee, Keith Latham, Jose B. Cibelli

Department of Electrical and Computer Engineering: Faculty Publications

Background: Global activation of the embryonic genome (EGA), one of the most critical steps in early mammalian embryo development, is recognized as the time when interspecies somatic cell nuclear transfer (iSCNT) embryos fail to thrive.

Methodology/Principal Findings: In this study, we analyzed the EGA-related transcriptome of rhesus-bovine iSCNT 8- to 16- cell embryos and dissected the reprogramming process in terms of embryonic gene activation, somatic gene silencing, and maternal RNA degradation. Compared with fibroblast donor cells, two thousand and seven genes were activated in iSCNT embryos, one quarter of them reaching expression levels comparable to those found in in vitro …

Coparental Communication, Relational Satisfaction, And Mental Health In Stepfamilies, Paul Schrodt, Dawn O. Braithwaite

Department of Communication Studies: Faculty Publications

This study tested a series of actor–partner interdependence models of coparental communication, relational satisfaction, and mental health in stepfamilies. Participants included 127 couples (N = 254). Results revealed 2 actor-oriented models whereby parents’ and stepparents’ coparental communication quality positively predicted their own (but not their partners’) satisfaction and mental health. A final model revealed that parents’ relational satisfaction mediated the effect of coparental communication on their own mental health. A similar pattern emerged for stepparents, although coparental communication continued to have a direct, positive effect on stepparents’ mental health. Importantly, parents’ coparental communication produced an inverse partner effect on stepparents’ …

Ex-Spouses’ Relational Satisfaction As A Function Of Coparental Communication In Stepfamilies, Paul Schrodt, Aimee E. Miller, Dawn O. Braithwaite

Department of Communication Studies: Faculty Publications

This study tested a series of actor-partner interdependence models of coparental communication and relational satisfaction among ex-spouses living in stepfamilies. Participants included 41 ex-spousal dyads (N = 82). Results revealed two actor-oriented models whereby ex-spouses’ supportive and antagonistic coparental communication predicted their own (but not their ex-spouse’s) relational satisfaction. A second set of models revealed that nonresidential parents’ supportive and antagonistic coparental communication with the residential stepparent predicted their own satisfaction with their ex-spouses, as well as their ex-spouse’s satisfaction with them (i.e., a partner effect). Importantly, the findings demonstrate the interdependence of coparenting relationships in stepfamilies, as supportive coparental …

Nutritional And Anti-Nutritional Compositions Of Defatted Nebraska Hybrid Hazelnut Meal, Yixiang Xu, Milford Hanna

Department of Food Science and Technology: Faculty Publications

Defatted meal of hybrid hazelnuts may have potential food and value-added industrial applications. The proximate composition, mineral elements, amino acid profile and anti-nutritional factors (total phenolics, tannins, condensed tannins and phytates) of defatted meals of ten Nebraska hybrid hazelnut genotypes were investigated. Excluding the amino acid profile, the nutritional and anti-nutritional compositions of the meals differed significantly, with high protein, carbohydrate, neutral and acid detergent fibre concentrations and energy value. Mineral concentrations were higher than those previously reported. K was the most abundant mineral element, followed by P, Ca and Mg. Seven essential amino acids accounted for approximately 27.8% of …

Specialized Adaptation Of A Lactic Acid Bacterium To The Milk Environment: The Comparative Genomics Of Streptococcus Thermophilus Lmd-9, Yong Jun Goh, Caitlin Goin, Sarah O'Flaherty, Eric Altermann, Robert W. Hutkins

Department of Food Science and Technology: Faculty Publications

Background: Streptococcus thermophilus represents the only species among the streptococci that has “Generally Regarded As Safe” status and that plays an economically important role in the fermentation of yogurt and cheeses. We conducted comparative genome analysis of S. thermophilus LMD-9 to identify unique gene features as well as features that contribute to its adaptation to the dairy environment. In addition, we investigated the transcriptome response of LMD-9 during growth in milk in the presence of Lactobacillus delbrueckii ssp. bulgaricus, a companion culture in yogurt fermentation, and during lytic bacteriophage infection.

Results: The S. thermophilus LMD-9 genome is …

Evaluation Of Mold And Mycotoxin Contaminations In Hybrid Hazelnuts Grown In Nebraska, Yixiang Xu, Andreia Bianchini, Milford A. Hanna

Department of Food Science and Technology: Faculty Publications

Hybrid hazelnuts are a potential oilseed crop for food and value-added industrial applications, but they are vulnerable to mold contamination. Mold and mycotoxin contamination were investigated in three forms (whole nut, kernel, and ground meal) of Nebraska hybrid hazelnuts. The nut was the most contaminated form, followed by ground meal and kernel. Penicillium was the predominant genus isolated from all three forms, and Alternaria and Cladosporium also were prevalent. In spite of presence of several toxigenic molds, all tested samples were mycotoxin free.

Barcoded Pyrosequencing Reveals That Consumption Of Galactooligosaccharides Results In A Highly Specific Bifidogenic Response In Humans, Lauren M. G. Davis, Ines Martinez, Jens Walter, Caitlin Goin, Robert W. Hutkins

Department of Food Science and Technology: Faculty Publications

Prebiotics are selectively fermented ingredients that allow specific changes in the gastrointestinal microbiota that confer health benefits to the host. However, the effects of prebiotics on the human gut microbiota are incomplete as most studies have relied on methods that fail to cover the breadth of the bacterial community. The goal of this research was to use high throughput multiplex community sequencing of 16S rDNA tags to gain a community wide perspective of the impact of prebiotic galactooligosaccharide (GOS) on the fecal microbiota of healthy human subjects. Fecal samples from eighteen healthy adults were previously obtained during a feeding trial …

Suggested Improvements For The Allergenicity Assessment Of Genetically Modified Plants Used In Foods, Richard E. Goodman

Department of Food Science and Technology: Faculty Publications

Genetically modified (GM) plants are increasingly used for food production and industrial applications. As the global population has surpassed 7 billion and per capita consumption rises, food production is challenged by loss of arable land, changing weather patterns, and evolving plant pests and disease. Previous gains in quantity and quality relied on natural or artificial breeding, random mutagenesis, increased pesticide and fertilizer use, and improved farming techniques, all without a formal safety evaluation. However, the direct introduction of novel genes raised questions regarding safety that are being addressed by an evaluation process that considers potential increases in the allergenicity, toxicity, …

Wild Buckwheat Is Unlikely To Pose A Risk To Buckwheat-Allergic Individuals, Julie A. Nordlee, Rakhi Panda, Joseph L. Baumert, Richard E. Goodman, Steve Taylor

Department of Food Science and Technology: Faculty Publications

Buckwheat (Fagopyrum esculentum) is a commonly allergenic food especially in Asia where buckwheat is more commonly consumed. Wild buckwheat (Polygonum convolvulus, recently changed to Fallopia convolvulus) is an annual weed prevalent in grain-growing areas of the United States. Wild buckwheat is not closely related to edible buckwheat although the seeds do have some physical resemblance. A large shipment of wheat into Japan was halted by the discovery of the adventitious presence of wild buckwheat seeds over possible concerns for buckwheat-allergic consumers. However, IgE-binding was not observed to an extract of wild buckwheat using sera from …

Dietary Selenium Affects Host Selenoproteome Expression By Influencing The Gut Microbiota, Marina V. Kasaikina, Marina A. Kravtsova, Byung Cheon Lee, Javier Seravalli, Daniel A. Peterson, Jens Walter, Ryan Legge, Andrew K. Benson, Dolph L. Hatfield, Vadim Gladyshev

Department of Food Science and Technology: Faculty Publications

Colonization of the gastrointestinal tract and composition of the microbiota may be influenced by components of the diet, including trace elements. To understand how selenium regulates the intestinal microflora, we used high-throughput sequencing to examine the composition of gut microbiota of mice maintained on selenium-deficient, selenium-sufficient, and selenium-enriched diets. The microbiota diversity increased as a result of selenium in the diet. Specific phylotypes showed differential effects of selenium, even within a genus, implying that selenium had unique effects across microbial taxa. Conventionalized germfree mice subjected to selenium diets gave similar results and showed an increased diversity of the bacterial population …

Il-2 Limits Il-12 Enhanced Lymphocyte Proliferation During Leishmania Amazonensis Infection, Amanda E. Ramer-Tait, Christine A. Petersen, Douglas E. Jones

Department of Food Science and Technology: Faculty Publications

C3H mice infected with Leishmania amazonensis develop persistent, localized lesions with high parasite loads. During infection, memory/effector CD44^hiCD4⁺ T cells proliferate and produce IL-2, but do not polarize to a known effector phenotype. Previous studies have demonstrated IL-12 is insufficient to skew these antigen-responsive T cells to a functional Th1 response. To determine the mechanism of this IL-12 unresponsiveness, we used an in vitro assay of repeated antigen activation. Memory/effector CD44^hiCD4⁺ T cells did not increase proliferation in response to either IL-2 or IL-12, although these cytokines upregulated CD25 expression. Neutralization of IL-2 enhanced …

Glutaraldehyde-Modified Recombinant Fel D 1: A Hypoallergen With Negligible Biological Activity But Retained Immunogenicity, Serge A. Versteeg, Ingrid Bulder, Martin Himly, Toni M. Van Capel, R. Van Den Hout, Stef J. Koppelman, Esther C. De Jong, Fatima Ferreira, Ronald Van Ree

Department of Food Science and Technology: Faculty Publications

Background: Recombinant allergens are under investigation for replacing allergen extracts in immunotherapy. Site-directed mutagenesis has been suggested as a strategy to develop hypoallergenic molecules that will reduce the risk of side effects. For decades, chemically modified allergen extracts have been used for the same reason.

Aim: To evaluate whether glutaraldehyde modification is a good strategy to produce hypoallergenic recombinant allergens with retained immunogenicity.

Methods: Fel d 1 was cloned as a single construct linking both chains of the molecule and expressed in Escherichia coli and Pichia pastoris. After physicochemical purification, recombinant Fel d 1 (rFel d 1) was …

Child Temperament, Teacher–Child Interactions, And Teacher–Child Relationships: A Longitudinal Investigation From First To Third Grade, Kathleen Moritz Rudasill

Department of Educational Psychology: Faculty Publications

The quality of children’s relationships with teachers in early elementary grades has implications for their academic and behavioral outcomes in later grades (e.g., Hamre & Pianta, 2001). The current study uses data from the NICHD SECCYD to extend work from a recent study of first grade (Rudasill & Rimm-Kaufman, 2009) by examining connections between child shyness, effortful control, and gender and teacher–child relationship quality in third grade directly and indirectly through the frequency of teacher- and child-initiated interactions in third grade, and teacher–child relationship quality in first grade. Path analyses using structural equation models were used to test two different …

The Role Of Classroom Quality In Ameliorating The Academic And Social Risks Associated With Difficult Temperament, Timothy W. Curby, Kathleen Moritz Rudasill, Taylor Edwards, Koraly Pérez-Edgar

Department of Educational Psychology: Faculty Publications

The present study examines the moderating role first grade classroom quality may have on the relations between children’s difficult temperament (assessed in infancy) and their academic and social outcomes in early elementary school (first grade). Using data from the National Institute of Child Health and Human Development’s Study of Early Child Care and Youth Development, 1032 children were rated by their mothers at 6 months of age on difficult temperament. The quality of first grade classroom environments were then observed and rated along three domains: emotional support, classroom organization, and instructional support. Regression analyses examined the statistical interactions between difficult …

In Vitro Models For Glaucoma Research: Effects Of Hydrostatic Pressure, Yuan Lei, Shadi Rajabi, Ryan M. Pedrigi, Darryl R. Overby, A. Thomas Read, C. Ross Ethier

Department of Mechanical and Materials Engineering: Faculty Publications

PURPOSE. The response of cells (e.g., optic nerve head [ONH] cells) to mechanical stress is important in glaucoma. Studies have reported the biological effects of hydrostatic pressure on ONH cells cultured on a rigid substrate. An apparatus, designed to independently vary hydrostatic pressure and gas tension (including oxygen tension) in culture medium, was used to evaluate the effects of pressure and tension on cell migration, shape, and α-tubulin architecture in a transformed cell line (DITNC1 rat cortical astrocytes).

METHODS. During the assay period, cells were exposed to one of four experimental configurations: (1) control pressure and control gas tension; (2) …

Spring-Migration Ecology Of Northern Pintails In South-Central Nebraska, Aaron T. Pearse, Gary L. Krapu, Robert R. Cox Jr., Bruce E. Davis

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Spring-migration ecology of staging Northern Pintails, Anas acuta, was investigated in south-central Nebraska, USA. Habitat associations, local movements, settling patterns, arrival dates, residency times and survival were estimated from 71 radiomarked pintails during spring 2001, 2003 and 2004, and diet determined from 130 females collected during spring 1998 and 1999. Seventy-two percent of pintail diurnal locations were in palustrine wetlands, 7% in riverine wetlands, 3% in lacustrine wetlands, 6% in municipal sewage lagoons and irrigation reuse pits and 10.5% in croplands. Emergent wetlands with hemi-marsh conditions were used diurnally more often than wetlands with either open or closed vegetation …

Integrating Estimates Of Ecosystem Services From Conservation Programs And Practices Into Models For Decision Makers, Ned H. Euliss Jr., Loren M. Smith, Shuguang Liu, Walter G. Duffy, Stephen P. Faulkner, Robert A. Gleason, S. Diane Eckles

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Most government agencies involved in land management are seeking consistent approaches to evaluate the effects of specific management actions on ecological processes and concurrent changes on ecosystem services. This is especially true within the context of anthropogenic influences, such as land use and climate change. The Conservation Effects Assessment Project—Wetlands National Component (CEAP–Wetlands) was developed by the U.S. Department of Agriculture (USDA) to evaluate effects of conservation practices on ecosystem services including carbon sequestration for climate stability, groundwater recharge, runoff and flood attenuation, water storage, nutrient and contaminant retention, and wildlife habitat. A primary purpose of CEAP–Wetlands is to provide …

Classifying The Hydrologic Function Of Prairie Potholes With Remote Sensing And Gis, Jennifer Rover, Chris K. Wright, Ned H. Euliss Jr., David M. Mushet, Bruce K. Wylie

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

A sequence of Landsat TM/ETM+ scenes capturing the substantial surface water variations exhibited by prairie pothole wetlands over a drought to deluge period were analyzed in an attempt to determine the general hydrologic function of individual wetlands (recharge, flowthrough, and discharge). Multipixel objects (water bodies) were clustered according to their temporal changes in water extents. We found that wetlands receiving groundwater discharge responded differently over the time period than wetlands that did not. Also, wetlands located within topographically closed discharge basins could be distinguished from discharge basins with overland outlets. Field verification data showed that discharge wetlands with closed basins …

The Scientific Classification Of Wolves: Canis Lupus Soupus, L. David Mech

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Gray wolf, timber wolf, red wolf, eastern wolf, brush wolf, arctic wolf, Mexican wolf, maned wolf, Ethiopian wolf, etc., etc. How many kinds of wolves are there? And what are the differences? This is a really good question, and the answer is getting more complicated all the time. Let us start by going back a few years to the way science looked at wolves more traditionally— before the days of the new field of molecular genetics. Molecular genetics examines the actual DNA of animals and tries to classify them according to genetic similarities. ...

What does all this mean in …

Kin Encounter Rate And Inbreeding Avoidance In Canids, Eli Geffen, Michael Kam, Reuven Hefner, Pall Hersteinsson, Anders Angerbjorn, Love Dalen, Eva Fuglei, Karin Noren, Jennifer R. Adams, John Vucetich, Thomas J. Meier, L. David Mech, Bridgett M. Vonholdt, Daniel R. Stahler, Robert K. Wayne

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Mating with close kin can lead to inbreeding depression through the expression of recessive deleterious alleles and loss of heterozygosity. Mate selection may be affected by kin encounter rate, and inbreeding avoidance may not be uniform but associated with age and social system. Specifically, selection for kin recognition and inbreeding avoidance may be more developed in species that live in family groups or breed cooperatively. To test this hypothesis, we compared kin encounter rate and the proportion of related breeding pairs in noninbred and highly inbred canid populations. The chance of randomly encountering a full sib ranged between 1–8% and …

Use Of Cranial Characters In Taxonomy Of The Minnesota Wolf (Canis Sp.), L. David Mech, Ronald M. Nowak, Sanford Weisberg

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Minnesota wolves (Canis sp.) sometimes are reported to have affinity to a small, narrow-skulled eastern form (Canis lupus lycaon Schreber, 1775) and sometimes to a larger, broader western form (Canis lupus nubilus Say, 1823). We found that pre-1950 Minnesota wolf skulls were similar in size to those of wolves from southeastern Ontario and smaller than those of western wolves. However, Minnesota wolf skulls during 1970–1976 showed a shift to the larger, western form. Although Minnesota skull measurements after 1976 were unavailable, rostral ratios from 1969 through 1999 were consistent with hybridization between the smaller eastern wolf and …

Gray Wolf (Canis Lupus) Movements And Behavior Around A Kill Site And Implications For Gps Collar Studies, L. David Mech

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Global Positioning System (GPS) radio-collars are increasingly used to estimate Gray Wolf (Canis lupus) kill rates. In interpreting results from this technology, researchers make various assumptions about wolf behavior around kills, yet no detailed description of this behavior has been published. This article describes the behavior of six wolves in an area of constant daylight during 30 hours, from when the pack killed a Muskox (Ovibos moschatus) calf and yearling on Ellesmere Island, Nunavut, Canada, to when they abandoned the kill remains. Although this is only a single incident, it demonstrates one possible scenario of pack …

Movements Of Wolves At The Northern Extreme Of The Species’ Range, Including During Four Months Of Darkness, L. David Mech, H. Dean Cluff

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Information about wolf (Canis lupus) movements anywhere near the northern extreme of the species’ range in the High Arctic (.75uN latitude) are lacking. There, wolves prey primarily on muskoxen (Ovibos moschatus) and must survive 4 months of 24 hr/day winter darkness and temperatures reaching 253 C. The extent to which wolves remain active and prey on muskoxen during the dark period are unknown, for the closest area where information is available about winter wolf movements is .2,250 km south. We studied a pack of $20 wolves on Ellesmere Island, Nunavut, Canada (80°N latitude) from July 2009 …

Parsing Demographic Effects Of Canine Parvovirus On A Minnesota Wolf Population, L. David Mech, Sagar M. Goyal

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

We examined 35 years of relationships among wolf (Canis lupus) pup survival, population change and canine parvovirus (CPV) seroprevalence in northeastern Minnesota to determine when CPV exerted its strongest effects. Using correlation analysis of data from five periods of 7-years each from 1973 through 2007, we learned that the strongest effect of CPV on pup survival (r = -0.73) and on wolf population change (r = -0.92) was during 1987 to 1993. After that, little effect was documented despite a mean CPV seroprevalence from 1994 of 2007 of 70.8% compared with 52.6% during 1987 to 1993. We …

Problems With Studying Wolf Predation On Small Prey In Summer Via Global Positioning System Collars, Vicente Palacios, L. David Mech

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

We attempted to study predation on various-sized prey by a male and female wolf (Canis lupus) with global positioning system (GPS) collars programmed to acquire locations every 10 min in the Superior National Forest of Minnesota. During May to August 2007, we investigated 147 clusters of locations (31% of the total) and found evidence of predation on a white-tailed deer (Odocoileus virginianus) fawn and yearling, a beaver (Castor canadensis), ruffed grouse (Bonasa umbellus), and fisher (Martes pennanti) and scavenging on a road-killed deer and other carrion. However, we missed finding …

Heat Waves Measured With Modis Land Surface Temperature Data Predict Changes In Avian Community Structure, Thomas P. Albright, Anna M. Pidgeon, Chadwick D. Rittenhouse, Murray K. Clayton, Curtis H. Flather, Patrick D. Culbert, Volker C. Radeloff

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Heat waves are expected to become more frequent and severe as climate changes, with unknown consequences for biodiversity. We sought to identify ecologically-relevant broad-scale indicators of heat waves based on MODIS land surface temperature (LST) and interpolated air temperature data and assess their associations with avian community structure. Specifically, we asked which data source, time periods, and heat wave indices best predicted changes in avian abundance and species richness. Using mixed effects models, we analyzed associations between these indices and data from the North American Breeding Bird Survey in the central United States between 2000 and 2007 in four ecoregions …

Forest Structure And Aboveground Biomass In The Southwestern United States From Modis And Misr, Mark Chopping, Crystal B. Schaaf, Feng Zhao, Zhuosen Wang, Anne Nolin, Gretchen G. Moisen, John V. Martonchik, Michael Bull

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Red band bidirectional reflectance factor data from the NASA MODerate resolution Imaging Spectroradiometer (MODIS) acquired over the southwestern United States were interpreted through a simple geometric–optical (GO) canopy reflectance model to provide maps of fractional crown cover (dimensionless), mean canopy height (m), and aboveground woody biomass (Mg ha⁻¹) on a 250 m grid. Model adjustment was performed after dynamic injection of a background contribution predicted via the kernel weights of a bidirectional reflectance distribution function (BRDF) model. Accuracy was assessed with respect to similar maps obtained with data from the NASA Multiangle Imaging Spectroradiometer (MISR) and to contemporaneous …

Thermogravimetric Analysis Of Forest Understory Grasses, Thomas Elder, John S. Kush, Sharon M. Hermann

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Forest understory grasses are of significance in the initiation, establishment and maintenance of fire, whether used as a management tool or when occurring as wildfire. The fundamental thermal properties of such grasses are critical to their behavior in fire situations and have been investigated in the current work by the application of thermogravimetric analysis (TGA). TGA was performed in nitrogen and air, over a range of heating rates, allowing for the determination of activation energies and temperatures associated with the degradation of hemicelluloses and cellulose. Of particular interest is the behavior of Imperata cylindrica (cogongrass) an invasive species in the …

Detection Of Autoreactive Cd4 T Cells Using Major Histocompatibility Complex Class Ii Dextramers, Chandirasegaran Massilamany, Bijaya Upadhyaya, Arunakumar Gangaplara, Charles Kuszynski, Jay Reddy

Nebraska Center for Virology: Faculty Publications

Background: Tetramers are useful tools to enumerate the frequencies of antigen-specific T cells. However, unlike CD8 T cells, CD4 T cells - especially self-reactive cells - are challenging to detect with major histocompatibility complex (MHC) class II tetramers because of low frequencies and low affinities of their T cell receptors to MHCpeptide complexes. Here, we report the use of fluorescent multimers, designated MHC dextramers that contain a large number of peptide-MHC complexes per reagent.

Results: The utility of MHC dextramers was evaluated in three autoimmune disease models: 1) proteolipid protein (PLP) 139-151-induced experimental autoimmune encephalomyelitis in SJL/J (H-2 …

Tetherin Inhibits Prototypic Foamy Virus Release, Fengwen Xu, Juan Tan, Ruikang Liu, Dan Xu, Yue Li, Yunqi Geng, Chen Liang, Wentao Qiao

Nebraska Center for Virology: Faculty Publications

Background: Tetherin (also known as BST-2, CD317, and HM1.24) is an interferon- induced protein that blocks the release of a variety of enveloped viruses, such as retroviruses, filoviruses and herpesviruses. However, the relationship between tetherin and foamy viruses has not been clearly demonstrated.

Results: In this study, we found that tetherin of human, simian, bovine or canine origin inhibits the production of infectious prototypic foamy virus (PFV). The inhibition of PFV by human tetherin is counteracted by human immunodeficiency virus type 1 (HIV-1) Vpu. Furthermore, we generated human tetherin transmembrane domain deletion mutant (delTM), glycosyl phosphatidylinositol (GPI) anchor …