Digital Commons Network^™

Enhancement Of Autophagy During Lytic Replication By The Kaposi’S Sarcoma-Associated Herpesvirus Replication And Transcription Activator, Hui-Ju Wen, Zhilong Yang, You Zhou, Charles Wood

Nebraska Center for Virology: Faculty Publications

Autophagy is one of two major degradation systems in eukaryotic cells. The degradation mechanism of autophagy is required to maintain the balance between the biosynthetic and catabolic processes and also contributes to defense against invading pathogens. Recent studies suggest that a number of viruses can evade or subvert the host cell autophagic pathway to enhance their own replication. Here, we investigated the effect of autophagy on the KSHV (Kaposi’s sarcoma-associated herpesvirus) life cycle. We found that the inhibition of autophagy reduces KSHV lytic reactivation from latency, and an enhancement of autophagy can be detected during KSHV lytic replication. In addition, …

New Species In The Genus Monoecocesuts (Cestoda: Anoplocephalidae) From Neotropical Rodents (Caviidae And Sigmodontidae), Terry R. Haverkost, Scott Lyell Gardner

Scott L. Gardner Publications

Anoplocephalid cestodes have a worldwide distribution, but relatively few species are known from South American rodents. By examining the collections of the Harold W. Manter Laboratory of Parasitology and the United States National Parasite Collection, 6 new species of Monoecocestus Beddard, 1914, are described, along with a redescription of Monoecocestus mackiewiczi Schmidt and Martin, 1978, based on the type specimens. The discussion includes commentary about uterine development, an important taxonomic character of the family, the vaginal dilation in immature segments (a character of potential taxonomic importance), and the implication of host usage to the evolutionary history and biogeography of species …

Induction Of Interferon And Interferon Signaling Pathways By Replication Of Defective Interfering Particle Rna In Cells Constitutively Expressing Vesicular Stomatitis Virus Replication Proteins, Debasis Panda, Phat X. Dinh, Lalit Beura, Asit K. Pattnaik

School of Veterinary and Biomedical Sciences: Faculty Publications

We show here that replication of defective interfering (DI) particle RNA in HEK293 cells stably expressing vesicular stomatitis virus (VSV) replication proteins potently activates interferon (IFN) and IFN signaling pathways through upregulation of IFN- promoter, IFN-stimulated response element (ISRE) promoter, and NF-κB promoter activities. Replication of DI particle RNA, not mere expression of the viral replication proteins, was found to be critical for induction of IFN and IFN signaling. The stable cells supporting replication of DI RNA described in this report will be useful in further examining the innate immune signaling pathways and the host cell functions in viral genome …

Towards An Understanding Of The Herpes Simplex Virus Type 1 Latency-Reactivation Cycle, Guey-Chuen Perng, Clinton Jones

School of Veterinary and Biomedical Sciences: Faculty Publications

Infection by herpes simplex virus type 1 (HSV-1) can cause clinical symptoms in the peripheral and central nervous system. Recurrent ocular shedding can lead to corneal scarring and vision loss making HSV-1 a leading cause of corneal blindness due to an infectious agent. The primary site of HSV-1 latency is sensory neurons within trigeminal ganglia. Periodically, reactivation from latency occurs resulting in virus transmission and recurrent disease. During latency, the latency-associated transcript (LAT) is abundantly expressed. LAT expression is important for the latency-reactivation cycle in animal models, in part, because it inhibits apoptosis, viral gene expression, and productive infection. A …

Method For Identification Of Virulence Determinants, Raul G. Barletta, Beth Harris

School of Veterinary and Biomedical Sciences: Faculty Publications

Disclosed are methods for the determination of virulence determinants in bacteria and in particular bacteria of the genus Mycobacterium. Also disclosed are compositions and methods for stimulating an immune response in an animal using bacteria and virulence determinants identified by the methods of the present invention.

Host-Specificity Of Myxoma Virus: Pathogenesis Of South American And North American Strains Of Myxoma Virus In Two North American Lagomorph Species, L. Silvers, D. Barnard, F. Knowlton, B. Inglis, A. Labudovic, M.K. Holland, P.A. Janssens, B.H. Van Leeuwen, P.J. Kerr

United States Department of Agriculture Wildlife Services: Staff Publications

The pathogenesis of South American and North American myxoma viruses was examined in two species of North American lagomorphs, Sylvilagus nuttallii (mountain cottontail) and Sylvilagus audubonii (desert cottontail) both of which have been shown to have the potential to transmit the South American type of myxoma virus. Following infection with the South American strain (Lausanne, Lu), S. nuttallii developed both a local lesion and secondary lesions on the skin. They did not develop the classical myxomatosis seen in European rabbits (Oryctolagus cuniculus). The infection at the inoculation site did not resolve during the 20-day time course of the …

Seroprevalence Of Equine Influenza Virus In Northeast And Southern Mexico, B. J. Blitvitch, L. A. Ibarra-Juarez, A. J. Cortes-Guzman, J. J. Root, A. B. Franklin, H. J. Sullivan, I. Fernandez-Salas

United States Department of Agriculture Wildlife Services: Staff Publications

Equine influenza A virus (EIV) is a highly infectious respiratory pathogen of horses (Hannant and Mumford 1996, Palese and Shaw 2007). The illness is characterised by an abrupt onset of fever, depression, coughing and nasal discharge, and is often complicated by secondary bacterial infections that can lead to pneumonia and death. Two subtypes of EIV, H3N8 and H7N7, have been isolated. The H7N7 subtype was first isolated from a horse in Czechoslovakia in 1956 (Prague/56), and the H3N8 subtype was first isolated from a horse in Miami in 1963 (Sovinova and others 1958, Waddell and others 1963). The last confirmed …

New Evidence Suggests Southern China As A Common Source Of Multiple Clusters Of Highly Pathogenic H5n1 Avian Influenza Virus, Bin Wu, Chengmin Wang, Guoying Dong, Yunhai Guo, Dale L. Nolte, Thomas Jude Deliberto, Jianguo Xu, Mingxing Duan, Hongxuan He

United States Department of Agriculture Wildlife Services: Staff Publications

Highly pathogenic H5N1 avian influenza is considered an avian disease, although there is some evidence of limited human-to-human transmission of the virus. A global effort is underway to control or eradicate the highly pathogenic H5N1 avian influenza virus in poultry and prevent human exposure, both of which may also reduce the risk of pandemic emergence. Hemagglutinin gene sequences from 215 human H5N1 influenza viruses were used to trace the source and dispersal pattern of human H5N1 influenza viruses on a global scale. A mutation network and phylogenetic analyses of the hemagglutinin gene show that human H5N1 influenza viruses can be …

A Model Of Tuberculosis Transmission And Intervention Strategies In An Urban Residential Area, Elsje Pienaar, Aaron M. Fluitt, Scott E. Whitney, Alison G. Freifeld, Hendrik J. Viljoen

Department of Chemical and Biomolecular Engineering: Faculty Publications

The model herein aims to explore the dynamics of the spread of tuberculosis (TB) in an informal settlement or township. The population is divided into households of various sizes and also based on commuting status. The model dynamics distinguishes between three distinct social patterns: the exposure of commuters during travel, random diurnal interaction and familial exposure at night. Following the general SLIR models, the population is further segmented into susceptible (S), exposed/latently infected (L), active/infectious (I), and recovered (R) individuals. During the daytime, commuters travel on public transport, while non-commuters randomly interact in the community to mimic chance encounters with …

Evolution Of The Kdo2-Lipid A Biosynthesis In Bacteria, Stephen O. Opiyo, Rosevelt L. Pardy, Hideaki Moriyama, Etsuko N. Moriyama

School of Biological Sciences: Faculty Publications

Background: Lipid A is the highly immunoreactive endotoxic center of lipopolysaccharide (LPS). It anchors the LPS into the outer membrane of most Gram-negative bacteria. Lipid A can be recognized by animal cells, triggers defense-related responses, and causes Gram-negative sepsis. The biosynthesis of Kdo₂-lipid A, the LPS substructure, involves with nine enzymatic steps.

Results: In order to elucidate the evolutionary pathway of Kdo₂-lipid A biosynthesis, we examined the distribution of genes encoding the nine enzymes across bacteria. We found that not all Gram-negative bacteria have all nine enzymes. Some Gram-negative bacteria have no genes encoding …

Epsvr And Epmeta: Prediction Of Antigenic Epitopes Using Support Vector Regression And Multiple Server Results, Shide Liang, Dandan Zheng, Daron M. Standley, Bo Yao, Martin Zacharias, Chi Zhang

School of Biological Sciences: Faculty Publications

Background: Accurate prediction of antigenic epitopes is important for immunologic research and medical applications, but it is still an open problem in bioinformatics. The case for discontinuous epitopes is even worse - currently there are only a few discontinuous epitope prediction servers available, though discontinuous peptides constitute the majority of all B-cell antigenic epitopes. The small number of structures for antigen-antibody complexes limits the development of reliable discontinuous epitope prediction methods and an unbiased benchmark to evaluate developed methods.

Results: In this work, we present two novel server applications for discontinuous epitope prediction: EPSVR and EPMeta, where EPMeta …

Nm23-H1 Can Induce Cell Cycle Arrest And Apoptosis In B Cells, Tathagata Choudhuri, Masanao Murakami, Rajeev Kaul, Sushil K. Sahu, Suchitra Mohanty, Subhash C. Verma, Pankaj Kumar, Erle S. Robertson

School of Biological Sciences: Faculty Publications

Nm23-H1 is a well-known tumor metastasis suppressor, which functions as a nucleoside-diphosphate kinase converting nucleoside diphosphates to nucleoside triphosphates with an expense of ATP. It regulates a variety of cellular activities, including proliferation, development, migration and differentiation known to be modulated by a series of complex signaling pathway. Few studies have addressed the mechanistic action of Nm23-H1 in the context of these cellular processes. To determine the downstream pathways modulated by Nm23-H1, we expressed Nm23-H1 in a Burkitt lymphoma derived B-cell line BJAB and performed pathway specific microarray analysis. The genes with significant changes in expression patterns were clustered in …

Evolutionary Aspects Of Urea Utilization By Fungi, Dhammika H. M. L. P Navarathna, Steven D. Harris, David D. Roberts, Kenneth W. Nickerson

Kenneth Nickerson Papers

The higher fungi exhibit a dichotomy with regard to urea utilization. The hemiascomycetes use urea amidolyase (DUR1,2), whereas all other higher fungi use the nickel-containing urease. Urea amidolyase is an energy-dependent biotincontaining enzyme. It likely arose before the Euascomycete/Hemiascomycete divergence c. 350 million years ago by insertion of an unknown gene into one copy of a duplicated methylcrotonyl CoA carboxylase (MccA). The dichotomy between urease and urea amidolyase coincides precisely with that for the Ni/Co transporter (Nic1p), which is present in the higher fungi that use urease and is absent in those that do not. We suggest that …

Structural Restoration Of Nematodes And Acanthocephalans Fixed In High Percentage Alcohol Using Dess Solution And Rehydration, Soraya Naem, Christopher Pagan, Steven A. Nadler

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Ninety-five percent ethanol is the most widely used field and laboratory preservative for nematodes and other helminth specimens intended for use in molecular systematics. Preservation of nematodes in high-concentration alcohols results in structural dehydration artifacts, including shrinkage and body surface distortions sufficient to obscure features required for morphological identification and analysis, thereby compromising precise morphometrics. However, treating dehydrated nematodes using a solution of DMSO, disodium EDTA, and NaCl, followed by rehydration in water produces marked improvements in specimen shape and surface features, resulting from diffusion of water into the tissues and pseudocoelom as the internal salt concentration is reduced. Following …

Soil-Transmitted Helminthiases: Implications Of Climate Change And Human Behavior, Haylee J. Weaver, John M. Hawdon, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Soil-transmitted helminthiases (STHs) collectively cause the highest global burden of parasitic disease after malaria and are most prevalent in the poorest communities, especially in sub-Saharan Africa. Climate change is predicted to alter the physical environment through cumulative impacts of warming and extreme fluctuations in temperature and precipitation, with cascading effects on human health and wellbeing, food security and socioeconomic infrastructure. Understanding how the spectrum of climate change effects will influence STHs is therefore of critical importance to the control of the global burden of human parasitic disease. Realistic progress in the global control of STH in a changing climate requires …

Muellerius Capillaris Dominates The Lungworm Community Of Bighorn Sheep At The National Bison Range, Montana, Vanessa O. Ezenwa, Alicia M. Hines, Elizabeth A. Archie, Eric P. Hoberg, Ingrid M. Asmundsson, John T. Hogg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Lungworm infections are common among bighorn sheep (Ovis canadensis) in North America, and the predominant species reported are Protostrongylus stilesi and P. rushi. The only records of another lungworm species, Muellerius capillaris, infecting bighorns come from South Dakota, USA. At the National Bison Range (NBR), Montana, USA we found that across six sampling periods, 100% of wild bighorn sheep surveyed were passing first-stage dorsal-spined larvae (DSL) which appeared to be consistent with M. capillaris. By contrast, only 39%or fewer sheep were passing Protostrongylus larvae. Using molecular techniques, we positively identified the DSL from the NBR …

Profess: A Protein Function, Evolution, Structure And Sequence Database, Thomas Triplet, Matthew D. Shortridge, Mark A. Griep, Jaime L. Stark, Robert Powers, Peter Revesz

Robert Powers Publications

The proliferation of biological databases and the easy access enabled by the Internet is having a beneficial impact on biological sciences and transforming the way research is conducted. There are ~1100 molecular biology databases dispersed throughout the Internet. To assist in the functional, structural and evolutionary analysis of the abundant number of novel proteins continually identified from whole-genome sequencing, we introduce the PROFESS (PROtein Function, Evolution, Structure and Sequence) database. Our database is designed to be versatile and expandable and will not confine analysis to a pre-existing set of data relationships. A fundamental component of this approach is the development …

Solution Structure And Function Of Yndb, An Ahsa1 Protein From Bacillus Subtilis, Jaime L. Stark, Kelly A. Mercier, Geoffrey A. Mueller, Thomas B. Acton, Rong Xiao, Gaetano T. Montelione, Robert Powers

Robert Powers Publications

The solution structure of the Bacillus subtilis protein YndB has been solved using NMR in order to investigate proposed biological functions. The YndB structure exhibits the helix-grip fold, which consists of a β-sheet with two small and one long α-helix, forming a hydrophobic cavity that preferentially binds lipid-like molecules. Sequence and structure comparisons to proteins from eukaryotes, prokaryotes, and archaea suggest that YndB is very similar to the eukaryote protein Aha1, which binds to the middle domain of Hsp90 and induces ATPase activity. Based on these similarities, YndB has been classified as a member of the Activator of Hsp90 ATPase …

Tuberculosis Vaccine, Mohammed A. Sarhan

Saudi Medical Journal

Tuberculosis (TB) is still one of the leading causes of death from a single infectious agent, killing 1.6 million people each year, mostly in developing countries. The existing vaccines, Bacille Calmette and Guerin (BCG), are efficient in preventing the most severe disseminated forms of disease in children and newborns, but its efficacy against active TB in adults has been challenged by several clinical studies. It is a common opinion that only the development of a new and more effective vaccine against TB would significantly ease the deadly disease. In recent years, looking for a new vaccine or an improved TB …

The Importance Of Hiv Antenatal Screening Programs For Pregnant Women, Ali A. Al-Jabri, Zakaryia K. Al-Muharrami, Abdullah A. Balkhair, Shyam S. Ganguly

Saudi Medical Journal

OBJECTIVE: To investigate retrospectively the prevalence of human immunodeficiency virus (HIV)-1 and 2 among pregnant women during a 10-year period. METHODS: The total number of pregnant women attending the Sultan Qaboos University Hospital (SQUH), Muscat, Oman between January 1995 and December 2005 was 11553 women. Their age range was 16-45 years (average of 28.6–7.6 years). The women were tested for HIV-1 and 2 using the standard enzyme-linked immunosorbent assay (ELISA). Positive samples were further tested by Western Blot. The data were statistically analyzed using the Statistical Package for Social Sciences Version 10.0. RESULTS: By ELISA testing, 21 women were positive …

Examination Of Homalometron Elongatum Manter, 1947 And Description Of A New Congener From Eucinostomus Currani Zahuranec, 1980 In The Pacific Ocean Off Costa Rica, Jessica H. Parker, Stephen S. Curran, Robin M. Overstreet, Vasyl V. Tkach

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Homalometron elongatum is reexamined using heat-killed material that was not subjected to pressure during fixation from Gerres cinereus collected from San Juan Harbor, Puerto Rico, U.S.A. The new material is compared with some paratype specimens and differs by having a much less variable forebody length, and a median rather than submedian genital pore. Tegumental spines reportedly cover the anterior end of the body but we observed tegumental spines covering the entire body surface in both the paratype and new material. Homalometron lesliorum n. sp. is described from Eucinostomus currani from the Pacific coasts of Costa Rica and Nicaragua. The new …

Seroprevalence Of Equine Influenza Virus In Northeast And Southern Mexico, B. J. Blitvich, L. A. Ibarra-Juarez, A. J. Cortes-Guzman, J. J. Root, A. B. Franklin, H. J. Sullivan, I. Fernandez-Salas

United States Department of Agriculture Wildlife Services: Staff Publications

EQUINE influenza A virus (EIV) is a highly infectious respiratory pathogen of horses (Hannant and Mumford 1996, Palese and Shaw 2007). The illness is characterized by an abrupt onset of fever, depression, coughing and nasal discharge, and is often complicated by secondary bacterial infections that can lead to pneumonia and death. Two subtypes of EIV, H3N8 and H7N7, have been isolated. The H7N7 subtype was first isolated from a horse in Czechoslovakia in 1956 (Prague/56), and the H3N8 subtype was first isolated from a horse in Miami in 1963 (Sovinova and others 1958, Waddell and others 1963). The last confirmed …

Seeking A Second Opinion: Uncertainty In Disease Ecology, Brett T. Mcclintock, James D. Nichols, Larissa L. Bailey, Darryl I. Mackenzie, William. L. Kendall, Alan B. Franklin

United States Department of Agriculture Wildlife Services: Staff Publications

Analytical methods accounting for imperfect detection are often used to facilitate reliable inference in population and community ecology. We contend that similar approaches are needed in disease ecology because these complicated systems are inherently difficult to observe without error. For example, wildlife disease studies often designate individuals, populations, or spatial units to states (e.g., susceptible, infected, post-infected), but the uncertainty associated with these state assignments remains largely ignored or unaccounted for. We demonstrate how recent developments incorporating observation error through repeated sampling extend quite naturally to hierarchical spatial models of disease effects, prevalence, and dynamics in natural systems. A highly …

Modeling The Economic Impact Of Feral Swine-Transmitted Foot-And- Mouth Disease: A Case Study From Missouri, Tyler Cozzens, Karen Gebhardt, Stephanie A. Shwiff, Mark W. Lutman, Kerri Pedersen, Seth Swafford

United States Department of Agriculture Wildlife Services: Staff Publications

Invasive feral swine combine a number of characteristics (e.g., high mobility, high fecundity, destructive behavior, reservoir of diseases, etc.) that make them one of the most serious wildlife threats to American agriculture. Additionally, feral swine are susceptible to foot-and-mouth disease (FMD) infection and could play a significant role in spreading and maintaining FMD if it was introduced to the U.S. Outbreaks of FMD also have devastating economic impacts and cause the loss of billions of dollars to the agricultural economy. Problems associated with spread and control would be exacerbated if FMD was contracted and spread by feral swine, threatening the …

Utility Of Livestock-Protection Dogs For Deterring Wildlife From Cattle Farms, Thomas M. Gehring, Kurt C. Vercauteren, Megan L. Provost, Anna C. Cellar

United States Department of Agriculture Wildlife Services: Staff Publications

Context. Livestock producers worldwide are negatively affected by livestock losses because of predators and wildlife transmitted diseases. In the western Great Lakes Region of the United States, this conflict has increased as grey wolf (Canis lupus) populations have recovered and white-tailed deer (Odocoileus virginianus) have served as a wildlife reservoir for bovine tuberculosis (Myobacterium bovis).

Aims. We conducted field experiments on cattle farms to evaluate the effectiveness of livestock-protection dogs (LPDs) for excluding wolves, coyotes (C. latrans), white-tailed deer and mesopredators from livestock pastures.

Methods. We integrated LPDs on …

Rodent Outbreaks In North America, Gary W. Witmer, Gilbert Proulx

United States Department of Agriculture Wildlife Services: Staff Publications

Fluctuations in rodent population densities in North America are a reality. Our understanding of the factors causing such fluctuations is incomplete; therefore, it is important to monitor populations to increase our understanding of natural wildlife communities so as to avoid substantial damage to agriculture, forestry, and urban infrastructures, and to prevent rodent-borne disease transmission to humans. There is a need to establish integrated pest management programs in which monitoring, preventive cultural practices, and various control methods (mechanical, physical, biological, and chemical) are strategically coordinated to maintain rodent population densities at acceptable pest levels.

How Specialists Can Be Generalists: Resolving The "Parasite Paradox" And Implications For Emerging Infectious Disease, Salvatore J. Agosta, Niklas Janz, Daniel R. Brooks

Harold W. Manter Laboratory of Parasitology: Faculty Publications

The parasite paradox arises from the dual observations that parasites (broadly construed, including phytophagous insects) are resource specialists with restricted host ranges, and yet shifts onto relatively unrelated hosts are common in the phylogenetic diversification of parasite lineages and directly observable in ecological time. We synthesize the emerging solution to this paradox: phenotypic flexibility and phylogenetic conservatism in traits related to resource use, grouped under the term ecological fitting, provide substantial opportunities for rapid host switching in changing environments, in the absence of the evolution of novel host-utilization capabilities. We discuss mechanisms behind ecological fitting, its implications for defining specialists …

First Report Of Viral Pathogens Wssv And Ihhnv In Argentine Crustaceans [Note], Sergio Roberto Martorelli, Robin M. Overstreet, Jean A. Jovanovich Alvillar

Harold W. Manter Laboratory of Parasitology: Faculty Publications

The pathogenic penaeid shrimp viruses white spot syndrome virus (WSSV) and infectious hypodermal and hematopoietic necrosis virus (IHHNV) are reported for the first time from Argentina. They both occurred in wild crustaceans in Bahia Blanca Estuary, with WSSV detected by polymerase chain reaction (pCR) or real time quantitative pCR (qpCR) methods as infecting samples as high as 56% of the penaeid Artemesia longinaris Bate, 1888, 67% of the grapsoid Cyrtograpsus angulatus dana, 1851, and 40% of the introduced palaemonid Palaemon macrodactylus Rathbun, 1902. The highest detected copy number was 39,600 copies/μg dNA. IHHNV was tested for using pCR in …

Population Genetic Analysis Of Large Sequence Polymorphisms In Plasmodium Falciparum Blood-Stage Antigens, A.D. Ahouidi, A.K. Bei, D.E. Neafsey, O. Sarr, S. Volkman, D. Milner, J. Cox-Singh, M.U. Ferreira, O. Ndir, Zul Premji, S. Mboup, M.T. Duraisingh

Pathology, East Africa

Plasmodium falciparum, the causative agent of human malaria, invades host erythrocytes using several proteins on the surface of the invasive merozoite, which have been proposed as potential vaccine candidates. Members of the multi-gene PfRh family are surface antigens that have been shown to play a central role in directing merozoites to alternative erythrocyte receptors for invasion. Recently, we identified a large structural polymorphism, a 0.58 Kb deletion, in the C-terminal region of the PfRh2b gene, present at a high frequency in parasite populations from Senegal. We hypothesize that this region is a target of humoral immunity. Here, by analyzing 371 …

Effects Of Chlorpromazine On Feeding And Wheel Running On Rats With Acute Wheel Access, Graham Gregory Parfeniuk

Theses and Dissertations (Comprehensive)

Anorexia Nervosa (AN) is characterized by a self-imposed starvation and is often accompanied by excessive exercise that results in severe malnutrition and sometimes death. Behavioural and pharmacological treatments of AN need to be improved. In rats, acute 3 h daytime wheel access suppresses ad lib feeding over the subsequent night relative to no wheel controls, a phenomenon that has been suggested as an animal model of AN. This acute wheel induced feeding suppression (WIFS), can be induced reliably when rats are given limited wheel access exposure during the light cycle (Lattanzio & Eikelboom, 2003). The acute WIFS is useful because …