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2009

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Choline-Utilizing Microblal Strains For Biologically Controlling Fusarium Head Blight, David A. Schisler, Naseem I. Khan, Michael J. Boehm, Patricia J. Slininger Jan 2009

Choline-Utilizing Microblal Strains For Biologically Controlling Fusarium Head Blight, David A. Schisler, Naseem I. Khan, Michael J. Boehm, Patricia J. Slininger

Department of Plant Pathology: Faculty Publications

Three choline utilizing strains of microorganisms isolated from the anthers of wheat, Aureobasidium pullulans strainAS 55.2, Arthrobacter species strain OH 221.3, and Pseudomonas species strain AS 64.4, are superior antagonists of F. graminearum. These microorganisms are effective for suppression and control of FHB in cereals, particularly in wheat and barley.


Dollar Spot Fungus Sclerotinla Homoeocarpa Produces Oxalic Acid, R. C. Venu, Robert A. Beaulieu, Terrance L. Graham, Ainhoa Martinez Medina, Michael J. Boehm Jan 2009

Dollar Spot Fungus Sclerotinla Homoeocarpa Produces Oxalic Acid, R. C. Venu, Robert A. Beaulieu, Terrance L. Graham, Ainhoa Martinez Medina, Michael J. Boehm

Department of Plant Pathology: Faculty Publications

Dollar spot, caused by Sclerotinia homoeocarpa,. is one of the most devastating diseases of turfgrass worldwide. Many fungi belonging to the genus Sclerotinia produce oxalic acid along with pectolytic cell wall-degrading enzymes. A series of in vitro experiments showed the relationships among temperature, pH, mycelial growth and acid production. Mycelial growth and acid production were most abundant when S. homoeocarpa was grown between 20 and 30°C. Acid production by S. homoeocarpa appeared to be dependent upon the pH of the environment in which it was grown. High performance liquid chromatography analysis of spent broth revealed the presence of oxalic acid. …


Molecular Characterization Of Citrus Tatter Leaf Virus Historically Associated With Meyer Lemon Trees: Complete Genome Sequence And Development Of Biologically Active In Vitro Transcripts, Satyanarayana Tatineni, Mohammad R. Afunian, Mark E. Hilf, Siddarame Gowda, William O. Dawson, Stephen M. Garnsey Jan 2009

Molecular Characterization Of Citrus Tatter Leaf Virus Historically Associated With Meyer Lemon Trees: Complete Genome Sequence And Development Of Biologically Active In Vitro Transcripts, Satyanarayana Tatineni, Mohammad R. Afunian, Mark E. Hilf, Siddarame Gowda, William O. Dawson, Stephen M. Garnsey

Department of Plant Pathology: Faculty Publications

Citrus tatter leaf virus isolated from Meyer lemon trees (CTLV-ML) from California and Florida induces bud union incompatibility of citrus trees grafted on the widely used trifoliate and trifoliate hybrid rootstocks. The complete genome sequence of CTLV-ML was determined to be 6,495 nucleotides (nts), with two overlapping open reading frames (ORFs) and a poly (A) tail at the 3′ end. The genome organization is similar to other capilloviruses, with ORF1 (nts 37 to 6,354) encoding a putative 242-kDa polyprotein which contains replication-associated domains plus a coat protein (CP), and ORF2 (nts 4,788 to 5,750), which is located within ORF1 in …


Plant-Microbes Interactions In Enhanced Fertilizer-Use Efficiency, Anthony O. Adesemoye, Joseph W. Kloepper Jan 2009

Plant-Microbes Interactions In Enhanced Fertilizer-Use Efficiency, Anthony O. Adesemoye, Joseph W. Kloepper

Department of Plant Pathology: Faculty Publications

The continued use of chemical fertilizers and manures for enhanced soil fertility and crop productivity often results in unexpected harmful environmental effects, including leaching of nitrate into groundwater, surface runoff of phosphorus and nitrogen runoff, and eutrophication of aquatic ecosystems. Integrated nutrient management systems are needed to maintain agricultural productivity and protect the environment. Microbial inoculants are promising components of such management systems. This review is a critical summary of the efforts in using microbial inoculants, including plant growth-promoting rhizobacteria and arbuscular mycorrhizal fungi for increasing the use efficiency of fertilizers. Studies with microbial inoculants and nutrients have demonstrated that …


A Redescription Of Three Species Of Monoecocestus (Cestoda: Anoplocephalidae) Including Monoecocestus Threlkeldi Based On New Material, Terry R. Haverkost, Scott Lyell Gardner Jan 2009

A Redescription Of Three Species Of Monoecocestus (Cestoda: Anoplocephalidae) Including Monoecocestus Threlkeldi Based On New Material, Terry R. Haverkost, Scott Lyell Gardner

Scott L. Gardner Publications

Because we have new and detailed data on species in the genus, herein we redescribe both Monoecocestus macrobursatus and M. minor based on existing museum specimens. We also redescribe M. threlkeldi (Parra, 1952) using material collected in Bolivia. Based on the specimens representing M. thelkeldi, we affirm that Perutaenia Parra, 1953 should remain a junior synonym of Monoecocestus.


A Herpesvirus Encoded Deubiquitinase Is A Novel Neuroinvasive Determinant, Joy I. Lee, Patricia J. Sollars, Scott B. Baver, Gary E. Pickard, Mindy Leelawong, Gregory A. Smith Jan 2009

A Herpesvirus Encoded Deubiquitinase Is A Novel Neuroinvasive Determinant, Joy I. Lee, Patricia J. Sollars, Scott B. Baver, Gary E. Pickard, Mindy Leelawong, Gregory A. Smith

School of Veterinary and Biomedical Sciences: Faculty Publications

The neuroinvasive property of several alpha-herpesviruses underlies an uncommon infectious process that includes the establishment of life-long latent infections in sensory neurons of the peripheral nervous system. Several herpesvirus proteins are required for replication and dissemination within the nervous system, indicating that exploiting the nervous system as a niche for productive infection requires a specialized set of functions encoded by the virus. Whether initial entry into the nervous system from peripheral tissues also requires specialized viral functions is not known. Here we show that a conserved deubiquitinase domain embedded within a pseudorabies virus structural protein, pUL36, is essential for initial …


Regulation Of Innate Immune Responses By Bovine Herpesvirus 1 And Infected Cell Protein 0 (Bicp0), Clinton Jones Jan 2009

Regulation Of Innate Immune Responses By Bovine Herpesvirus 1 And Infected Cell Protein 0 (Bicp0), Clinton Jones

School of Veterinary and Biomedical Sciences: Faculty Publications

Bovine herpesvirus 1 (BoHV-1) infected cell protein 0 (bICP0) is an important transcriptional regulatory protein that stimulates productive infection. In transient transfection assays, bICP0 also inhibits interferon dependent transcription. bICP0 can induce degradation of interferon stimulatory factor 3 (IRF3), a cellular transcription factor that is crucial for activating beta interferon (IFN-β) promoter activity. Recent studies also concluded that interactions between bICP0 and IRF7 inhibit trans-activation of IFN-β promoter activity. The C3HC4 zinc RING (really important new gene) finger located near the amino terminus of bICP0 is important for all known functions of bICP0. A recombinant virus that contains a single …


Mouse × Pig Chimeric Antibodies Expressed In Baculovirus Retain The Same Properties Of Their Parent Antibodies, Ana M. Jar, Fernando A. Osorio, Osvaldo J. López Jan 2009

Mouse × Pig Chimeric Antibodies Expressed In Baculovirus Retain The Same Properties Of Their Parent Antibodies, Ana M. Jar, Fernando A. Osorio, Osvaldo J. López

School of Veterinary and Biomedical Sciences: Faculty Publications

The development of hybridoma and recombinant DNA technologies has made it possible to use antibodies against cancer, autoimmune disorders, and infectious diseases in humans. These advances in therapy, as well as immunoprophylaxis, could also make it possible to use these technologies in agricultural species of economic importance such as pigs. Porcine reproductive and respiratory syndrome virus (PRRSV) is an arterivirus causing very important economic losses to the industry. Passive transfer of antibodies obtained by biotechnology could be used in the future to complement or replace vaccination against this and other pig pathogens. To this end, we constructed and studied the …


Spontaneous Idiopathic Arteritis Of The Testicular Artery In Raccoons (Procyon Lotor), A. N. Hamir, M. V. Palmer, H. Li, J. Stasko, D. G. Rogers Jan 2009

Spontaneous Idiopathic Arteritis Of The Testicular Artery In Raccoons (Procyon Lotor), A. N. Hamir, M. V. Palmer, H. Li, J. Stasko, D. G. Rogers

School of Veterinary and Biomedical Sciences: Faculty Publications

The testes and the spermatic cord of raccoons (Procyon lotor, kits to adult breeders; n = 48) were examined. Segmental arteritis confined to the extratesticular portions of the testicular artery was present in raccoons of all ages. The arterial changes were seen in laboratory-confined experimental and control animals as well as in wild-caught raccoons. The lesions consisted of proliferative endarteritis with presence of inflammatory cells within the intima, media, and the adventitial regions of most affected vessels. Some aspects of the proliferative arterial lesions were reminiscent of systemic necrotizing vasculitis (polyarteritis nodosa), an immunologically mediated condition of animals and humans. …


Alkaline Hydrolysis Of Mouse-Adapted Scrapie For Inactivation And Disposal Of Prion-Positive Material, R. G. L. Murphy, J. A. Scanga, B. E. Powers, J. L. Pilon, K. C. Vercauteren, P. B. Nash, G. C. Smith, K. E. Belk Jan 2009

Alkaline Hydrolysis Of Mouse-Adapted Scrapie For Inactivation And Disposal Of Prion-Positive Material, R. G. L. Murphy, J. A. Scanga, B. E. Powers, J. L. Pilon, K. C. Vercauteren, P. B. Nash, G. C. Smith, K. E. Belk

United States Department of Agriculture Wildlife Services: Staff Publications

Prion diseases such as bovine spongiform encephalopathy, chronic wasting disease, and scrapie pose serious risks to human and animal health due to a host of disease-specific factors, including the resistance of infectious prions (PrPSc) to natural degradation and to most commercial inactivation procedures. In an attempt to address this concern, a mouse model was used to compare the efficacy of an alkaline hydrolysis process with a simulated continuous-flow rendering treatment for disposal of PrPSc-infected biological material. Female C57/BL6 mice (N = 120) were randomly divided into 4 treatment groups (n = 30), and each mouse was …


Benefit Cost Scenarios Of Potential Oral Rabies Vaccination For Skunks In California, Stephanie A. Shwiff, Ray T. Sterner, Robert Hale, Michele T. Jay, Ben Sun, Dennis Slate Jan 2009

Benefit Cost Scenarios Of Potential Oral Rabies Vaccination For Skunks In California, Stephanie A. Shwiff, Ray T. Sterner, Robert Hale, Michele T. Jay, Ben Sun, Dennis Slate

United States Department of Agriculture Wildlife Services: Staff Publications

Scenario-based analyses were computed for benefits and costs linked with hypothetical oral rabies vaccination (ORV) campaigns to contain or eliminate skunk-variant rabies in skunks (Mephitis mephitis) in California, USA. Scenario 1 assumed baiting eight zones (43,388 km2 total) that comprised 73% of known skunk rabies locations in the state. Scenario 2 also assumed baiting these eight zones, but further assumed that added benefits would result from preventing the spread of skunk-variant rabies into Los Angeles County, USA. Scenarios assumed a fixed bait cost ($1.24 each) but varied campaigns (one, two and three annual ORV applications), densities of …


Longevity Of Dayglo Fluorescent Particle Marker Used To Mark Birds In Flight Pen And Field, Shelagh K. Tupper, John L. Cummings, Richard M. Engeman Jan 2009

Longevity Of Dayglo Fluorescent Particle Marker Used To Mark Birds In Flight Pen And Field, Shelagh K. Tupper, John L. Cummings, Richard M. Engeman

United States Department of Agriculture Wildlife Services: Staff Publications

Spray application of fluorescent particles is a widely used and very valuable technique for marking birds. This remains one of the few practical means to mark large numbers of birds for monitoring movement, despite recent availability of a variety of more technologically advanced options. We monitored the longevity of the DayGlo fluorescent particle marker on red-winged blackbirds under simulated field conditions in a flight pen, and in an observational field experiment. In the pen study we banded 52 red-winged blackbirds with individually numbered leg bands, and sprayed them with DayGlo fluorescent particle marker from a distance of ~50 cm, on …


Antemortem Detection Of PrpCwd In Preclinical, Ranch-Raised Rocky Mountain Elk (Cervus Elaphus Nelson) By Biopsy Of The Rectal Mucosa, Terry R. Spraker, Kurt C. Vercauteren, Thomas Gidlewski, David A. Schneider, Randy Munger, Aru Balachandran, Katherine I. O’Rourke Jan 2009

Antemortem Detection Of PrpCwd In Preclinical, Ranch-Raised Rocky Mountain Elk (Cervus Elaphus Nelson) By Biopsy Of The Rectal Mucosa, Terry R. Spraker, Kurt C. Vercauteren, Thomas Gidlewski, David A. Schneider, Randy Munger, Aru Balachandran, Katherine I. O’Rourke

United States Department of Agriculture Wildlife Services: Staff Publications

Antemortem biopsy of the rectal mucosa was evaluated as a method for the preclinical diagnosis of chronic wasting disease (CWD) in a herd of ranch-raised Rocky Mountain elk (Cervus elaphus nelson) quarantined because of exposure to CWD. Biopsy samples were obtained from 41 elk during the winter of 2005–2006 and from 26 elk from that herd still alive and available for testing during the winter of 2006–2007. Samples were examined for PrPCWD, the protein marker for CWD infection, by immunohistochemistry. PrPCWD was detected in follicles of the rectoanal mucosa-associated lymphoid tissue in biopsy samples from …


Options For The Control Of Disease 3: Targeting The Environment, Alastair Ward, Kurt C. Vercauteren, W. David Walter, Emmanuellle Gilot-Fromont, Sophie Rossi, Gareth Edwards- Jones, Mark S. Lambert, Michael R. Hutchings, Richard J. Delahay Jan 2009

Options For The Control Of Disease 3: Targeting The Environment, Alastair Ward, Kurt C. Vercauteren, W. David Walter, Emmanuellle Gilot-Fromont, Sophie Rossi, Gareth Edwards- Jones, Mark S. Lambert, Michael R. Hutchings, Richard J. Delahay

United States Department of Agriculture Wildlife Services: Staff Publications

Management of wildlife disease can be targeted at pathogens, hosts or vector populations, but may also focus on the environment. As constituent elements of any given environment, resident wildlife populations, and their pathogens, may be profoundly influenced by environmental change, in terms of their abundance, distribution and behavior. Hence, it is reasonable to expect that incorporation of environmental manipulation into a program to control wildlife diseases may potentially result in outcomes as effective as direct intervention aimed at hosts, pathogens and vectors.


Influence Of Vitamin K-Rich Plant Foods On Anticoagulant Baiting Efficacy In Wild House Mice, Wild Norway Rats, And Wild Black Rats, G. W. Witmer, P. W. Burke Jan 2009

Influence Of Vitamin K-Rich Plant Foods On Anticoagulant Baiting Efficacy In Wild House Mice, Wild Norway Rats, And Wild Black Rats, G. W. Witmer, P. W. Burke

United States Department of Agriculture Wildlife Services: Staff Publications

Rodents introduced to islands have caused the extinction of many species of animals. Anticoagulant rodenticides are relied on to eradicate rodents from these islands, but if the rodents are eating plant materials that contain high amounts of vitamin K (the antidote to anticoagulants) anticoagulant rodenticides may not be effective. In a laboratory trial, individually caged Noway Rats Rattus norvegicus, Black Rats R. raffus and House Mice Mus musculus were fed fresh plant material high in vitamin K (Collards [0.62 mg vitamin K per 100 g] and Brussels Sprouts [0.19 mg vitamin K per 100 g]) for a period of …


Fate Of Sulfamethoxazole, 4-Nonylphenol, And 17Β-Estradiol In Groundwater Contaminated By Wastewater Treatment Plant Effluent, Larry Barber, Steffanie Keefe, Dennis Leblanc, Paul Bradley, Francis Chapelle, Michael Meyer, Keith Lofton, Dana Kolpin, Fernando Rubio Jan 2009

Fate Of Sulfamethoxazole, 4-Nonylphenol, And 17Β-Estradiol In Groundwater Contaminated By Wastewater Treatment Plant Effluent, Larry Barber, Steffanie Keefe, Dennis Leblanc, Paul Bradley, Francis Chapelle, Michael Meyer, Keith Lofton, Dana Kolpin, Fernando Rubio

United States Geological Survey: Staff Publications

Organic wastewater contaminants (OWCs) were measured in samples collected from monitoring wells located along a 4.5- km transect of a plume of groundwater contaminated by 60 years of continuous rapid infiltration disposal of wastewater treatment plant effluent. Fifteen percent of the 212OWCs analyzed were detected, including the antibiotic sulfamethoxazole (SX), the nonionic surfactant degradation product 4-nonylphenol (NP), the solvent tetrachloroethene (PCE), and the disinfectant 1,4-dichlorobenzene (DCB). Comparison of the 2005 sampling results to data collected from the same wells in 1985 indicates that PCE and DCB are transported more rapidly in the aquifer than NP, consistent with predictions based on …


Biodegradation Of 17Β-Estradiol, Estrone And Testosterone In Stream Sediments, Paul Bradley, Larry Barber, Francis Chapelle, James Gray, Dana Kolpin, Peter B. Mcmahon Jan 2009

Biodegradation Of 17Β-Estradiol, Estrone And Testosterone In Stream Sediments, Paul Bradley, Larry Barber, Francis Chapelle, James Gray, Dana Kolpin, Peter B. Mcmahon

United States Geological Survey: Staff Publications

Biodegradation of 17β-estradiol (E2), estrone (E1), and testosterone (T) was investigated in three wastewater treatment plant (WWTP) affected streams in the United States. Relative differences in the mineralization of [4-14C] substrates were assessed in oxic microcosms containing saturated sediment or water-only from locations upstream and downstream of the WWTP outfall in each system. Upstream sediment demonstrated significant mineralization of the “A” ring of E2, E1, and T, with biodegradation of T consistently greater than that of E2 and no systematic difference in E2 and E1 biodegradation. “A” ring mineralization also was observed in downstream sediment, with E1 and …


Response Of Sandhill Crane (Grus Canadensis Riverine Roosting Habitat To Changes In Stage And Sandbar Morphology, Paul Kinzel, Jonathan Nelson, Ashley Heckman Jan 2009

Response Of Sandhill Crane (Grus Canadensis Riverine Roosting Habitat To Changes In Stage And Sandbar Morphology, Paul Kinzel, Jonathan Nelson, Ashley Heckman

United States Geological Survey: Staff Publications

Over the past century, flow regulation and vegetation encroachment have reduced active channel widths along the central Platte River, Nebraska. During the last two decades, an annual program of in-channel vegetation management has been implemented to stabilize or expand active channel widths. Vegetation management practices are intended to enhance riverine habitats which include nocturnal roosting habitat for sandhill cranes. Evaluating the success of other management treatments such as streamflow modification requires an understanding of how flow shapes the sandbars in the river and how sandbar morphology interacts with flow to create crane habitat. These linkages were investigated along a 1-km …


Prevalence Of Antibodies To West Nile Virus And Other Arboviruses Among Crested Caracaras (Caracara Cheriway) In Florida, Nicole M. Nemeth, James F. Dwyer, Joan L. Morrison, James D. Fraser Jan 2009

Prevalence Of Antibodies To West Nile Virus And Other Arboviruses Among Crested Caracaras (Caracara Cheriway) In Florida, Nicole M. Nemeth, James F. Dwyer, Joan L. Morrison, James D. Fraser

United States Department of Agriculture Wildlife Services: Staff Publications

We documented the antibody prevalence to three arboviruses, St. Louis encephalitis virus (SLEV), eastern equine encephalitis virus (EEEV), and West Nile virus (WNV), in Crested Caracaras (Caracara cheriway; n = 80) in Florida from 2007 to 2008. Antibody prevalence to WNV was higher (9%) than for the other viruses. Most seropositive birds were adults (≥3 yr of age), with 55% of adults testing positive for antibodies to at least one virus. Adults were significantly more likely to have antibodies to WNV than nonadults (P<0.001). Prevalence of SLEV and EEEV antibodies among Crested Caracaras was 3% for each virus, and three adult caracaras had indistinguishable anti-flavivirus antibodies. The susceptibility of Crested Caracaras to adverse effects of WNV, SLEV, or EEEV infection remains unknown; however, we observed that some free-ranging individuals survived infection and successfully fledged young. Knowledge of arboviral infection among Florida’s Crested Caracara, which is both state and federally threatened, is valuable considering increasing pressure on this population from rapid and extensive habitat alterations.


Diet Ph, And Viscosity Affect Development And Survival Of Screwworm Larvae (Diptera: Calliphoridae), M. F. Chaudhury, Steven R. Skoda Jan 2009

Diet Ph, And Viscosity Affect Development And Survival Of Screwworm Larvae (Diptera: Calliphoridae), M. F. Chaudhury, Steven R. Skoda

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The effects of dietary pH and viscosity on larval development of the New World screwworm, Cochliomyia hominivorax (Coquerel) (Diptera: Calliphoridae), were studied in the laboratory using a gel-based and a cellulose fiber-based media. The mean initial pH of the standard gelled diet was lower (6.5 ± 0.3) than that of the standard cellulose fiber-based diet (6.8 ± 0.6). As larval development progressed, these values decreased to below 6.0 possibly due to the accumulation of acidic metabolic waste. Diets formulated with higher initial pH (7.5) produced a slightly larger and greater number of pupae compared with those for untreated standard diets. …


Farmers And Nature Conservation: What Is Known About Attitudes, Context Factors And Actions Affecting Conservation?, Johan Ahnström, Jenny Höckert, Hanna L. Bergea, Charles A. Francis, Peter Skelton, Lars Hallgren Jan 2009

Farmers And Nature Conservation: What Is Known About Attitudes, Context Factors And Actions Affecting Conservation?, Johan Ahnström, Jenny Höckert, Hanna L. Bergea, Charles A. Francis, Peter Skelton, Lars Hallgren

Department of Agronomy and Horticulture: Faculty Publications

Farmers’ attitudes towards viability of specific conservation practices or actions strongly impact their decisions on adoption and change. This review of ‘attitude’ information reveals a wide range of perceptions about what conservation means and what the impacts of adoption will mean in economic and environmental terms. Farmers operate in a tight financial situation, and in parts of the world they are highly dependent on government subsidies, and cannot afford to risk losing that support. Use of conservation practices is most effective when these are understood in the context of the individual farm, and decisions are rooted in land and resource …


Alternative Methods For Wetland Restoration In The Rainwater Basin, Nebraska, Usa, Nancy Nicolai, James L. Stubbendieck Jan 2009

Alternative Methods For Wetland Restoration In The Rainwater Basin, Nebraska, Usa, Nancy Nicolai, James L. Stubbendieck

Department of Agronomy and Horticulture: Faculty Publications

South-central Nebraska is recognized as a focal point of the mid-continent migratory waterfowl flyway. Substantial wetland alterations led to a critical need for restoration. Managers have restored wetlands by scraping with heavy earthmoving equipment to remove excess organic material and near-monocultures of reed canarygrass (Phalaris arundinacea L.) but managers report high costs and topsoil perturbation. Moderate livestock grazing was tested to compare results with those achieved with mechanical techniques. Advantages of grazing could include low costs and less soil perturbation. During the 2006 and 2007 growing seasons, we compared cover of bare ground and open water and plant species …


Nutrient And Chemical Properties Of Aging Golf Course Putting Greens As Impacted By Soil Depth And Mat Development, Ty A. Mcclellan, Roch E. Gaussoin, Bob Shearman, Charles S. Wortmann, Martha Mamo, Garald L. Horse, David B. Marx Jan 2009

Nutrient And Chemical Properties Of Aging Golf Course Putting Greens As Impacted By Soil Depth And Mat Development, Ty A. Mcclellan, Roch E. Gaussoin, Bob Shearman, Charles S. Wortmann, Martha Mamo, Garald L. Horse, David B. Marx

Department of Agronomy and Horticulture: Faculty Publications

Nutrient and chemical changes in turfgrass sand-based root zones are not well understood. This study was conducted to characterize nutrient and chemical properties in putting greens influenced by root zone mixture and establishment treatment, putting green age, and soil depth. Putting greens were constructed and established with Agrostis stolonifera L. in sequential years from 1997 to 2000. Treatments included root zone mixtures of 80:20 (v:v) sand and sphagnum peat and 80:15:5 (v:v:v) sand, sphagnum peat, and soil, and accelerated versus controlled establishment. In the establishment year, the accelerated treatment received 2.6-, 3.0-, and 2.6-fold more nitrogen, phosphorus, and potassium, respectively, …


Oxygen-Mediated Enhancement Of Primary Hepatocyte Metabolism, Functional Polarization, Gene Expression, And Drug Clearance, Srivatsan Kidambi, Rubin S. Yarmush, Eric Novik, Piyun Chao, Martin L. Yarmush, Yaakov Nahmias Jan 2009

Oxygen-Mediated Enhancement Of Primary Hepatocyte Metabolism, Functional Polarization, Gene Expression, And Drug Clearance, Srivatsan Kidambi, Rubin S. Yarmush, Eric Novik, Piyun Chao, Martin L. Yarmush, Yaakov Nahmias

Department of Chemical and Biomolecular Engineering: Faculty Publications

The liver is a major site for the metabolism of xenobiotic compounds due to its abundant level of phase I/II metabolic enzymes. With the cost of drug development escalating to over $400 million/ drug there is an urgent need for the development of rigorous models of hepatic metabolism for preclinical screening of drug clearance and hepatotoxicity. Here, we present a microenvironment in which primary human and rat hepatocytes maintain a high level of metabolic competence without a long adaptation period. We demonstrate that co-cultures of hepatocytes and endothelial cells in serum-free media seeded under 95% oxygen maintain functional apical and …


Bulked Segregant Analysis Using The Goldengate Assay To Locate The Rpp3 Locus That Confers Resistance To Soybean Rust In Soybean, D. L. Hyten, James R. Smith, Reid D. Frederick, Mark L. Tucker, Qijian Song, P. B. Cregan Jan 2009

Bulked Segregant Analysis Using The Goldengate Assay To Locate The Rpp3 Locus That Confers Resistance To Soybean Rust In Soybean, D. L. Hyten, James R. Smith, Reid D. Frederick, Mark L. Tucker, Qijian Song, P. B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

Few resistance loci to soybean rust (SBR), caused by Phakopsora pachyrhizi Syd., have been genetically mapped and linked to molecular markers that can be used for marker assisted selection. New technologies are available for single nucleotide polymorphism (SNP) genotyping that can be used to rapidly map traits controlled by single loci such as resistance to SBR. Our objective was to demonstrate that the highthroughput SNP genotyping method known as the GoldenGate assay can be used to perform bulked segregant analysis (BSA) to fi nd candidate regions to facilitate effi cient mapping of a dominant resistant locus to SBR designated Rpp3 …


Mapping And Confirmation Of A New Allele At Rpp1 From Soybean Pi 594538a Conferring Rb Lesion–Type Resistance To Soybean Rust, Nanda Chakraborty, Joe Curley, Reid D. Frederick, D. L. Hyten, Randall L. Nelson, Glen L. Hartman, Brian W. Diers Jan 2009

Mapping And Confirmation Of A New Allele At Rpp1 From Soybean Pi 594538a Conferring Rb Lesion–Type Resistance To Soybean Rust, Nanda Chakraborty, Joe Curley, Reid D. Frederick, D. L. Hyten, Randall L. Nelson, Glen L. Hartman, Brian W. Diers

Department of Agronomy and Horticulture: Faculty Publications

Soybean rust, caused by Phakopsora pachyrhizi (H. Sydow & Sydow), is a destructive soybean [Glycine max (L.) Merr.] disease and identification of new resistance genes is essential for effective rust management. Our research objectives were to map and confirm the location of resistance gene(s) in PI 594538A using a population of 98 F3:4 lines from across between PI 594538A (reddish-brown [RB] lesions) and the susceptible cultivar Loda (tan [TAN] lesions). The lines were inoculated with the P. pachyrhizi isolate ZM01-1 from Zimbabwe. The RB resistance in PI 594538A mapped on linkage group G as a single dominant gene. …


Agroecology As A Science, A Movement And A Practice: A Review, A. Wezel, S. Bellon, T. Doré, Charles A. Francis, D. Vallod, C. David Jan 2009

Agroecology As A Science, A Movement And A Practice: A Review, A. Wezel, S. Bellon, T. Doré, Charles A. Francis, D. Vallod, C. David

Department of Agronomy and Horticulture: Faculty Publications

Agroecology involves various approaches to solve actual challenges of agricultural production. Though agroecology initially dealt primarily with crop production and protection aspects, in recent decades new dimensions such as environmental, social, economic, ethical and development issues are becoming relevant. Today, the term ‘agroecology’ means either a scientific discipline, agricultural practice, or political or social movement. Here we study the different meanings of agroecology. For that we analyse the historical development of agroecology. We present examples from USA, Brazil, Germany, and France. We study and discuss the evolution of different meanings agroecology. The use of the term agroecology can be traced …


Detection And Validation Of Single Feature Polymorphisms Using Rna Expression Data From A Rice Genome Array, Sung-Hyun Kim, Prasanna R. Bhat, Xinping Cui, Harkamal Walia, Jin Xu, Steve Wanamaker, Abdelbagi M. Ismail, Clyde Wilson, Timothy J. Close Jan 2009

Detection And Validation Of Single Feature Polymorphisms Using Rna Expression Data From A Rice Genome Array, Sung-Hyun Kim, Prasanna R. Bhat, Xinping Cui, Harkamal Walia, Jin Xu, Steve Wanamaker, Abdelbagi M. Ismail, Clyde Wilson, Timothy J. Close

Department of Agronomy and Horticulture: Faculty Publications

Background: A large number of genetic variations have been identified in rice. Such variations must in many cases control phenotypic differences in abiotic stress tolerance and other traits. A single feature polymorphism (SFP) is an oligonucleotide array-based polymorphism which can be used for identification of SNPs or insertion/deletions (INDELs) for high throughput genotyping and high density mapping. Here we applied SFP markers to a lingering question about the source of salt tolerance in a particular rice recombinant inbred line (RIL) derived from a salt tolerant and salt sensitive parent. Results: Expression data obtained by hybridizing RNA to an oligonucleotide array …


Antibiotic Use In Animal Production: Environmental Concerns, Teshome H. Regassa, Richard K. Koelsch, Charles S. Wortmann, Richard F. Randle, Akwasi A. Abunyewa Jan 2009

Antibiotic Use In Animal Production: Environmental Concerns, Teshome H. Regassa, Richard K. Koelsch, Charles S. Wortmann, Richard F. Randle, Akwasi A. Abunyewa

Department of Agronomy and Horticulture: Faculty Publications

Introduction

Antibiotic1 use in animal production has led to improved feed use efficiency and increased growth rates. In turn, these resulted in reduced food production costs and reduced excrement of manure nutrients which may cause pollution problems.

On the other hand, antibiotic use leads to antibiotic resistance and a possible reduction in effectiveness of treatment options for both animals and humans. This publication addresses these issues.

Disease-causing microorganisms2, including bacteria,are the most diverse and numerous organisms on earth. Diverse in their habitat, environmental adaptation, and mechanisms of reproduction, they have short generations with high multiplication rates. Such characteristics help develop …


Farm Tractor Rollover Protection: Why Simply Getting Rollover Protective Structures Installed On All Tractors Is Not Sufficient, Roger M. Hoy Jan 2009

Farm Tractor Rollover Protection: Why Simply Getting Rollover Protective Structures Installed On All Tractors Is Not Sufficient, Roger M. Hoy

Department of Agricultural and Biological Systems Engineering: Faculty Publications

In North America, agricultural is one of the most hazardous occupations, trailing only mining and construction in likelihood of experiencing a serious injury or fatality. Without quoting specific statistics, roughly one-half of the serious injuries experienced each year involve an agricultural tractor, and roughly one-half of the serious injuries involving tractors are rollovers. It is well established that when a tractor is equipped with a rollover protective structure (ROPS) and seatbelt, and both are utilized, serious injuries rarely, if ever occur, in the event of an overturn. In fact, tractor overturns are the leading cause of agricultural fatalities in the …