Digital Commons Network^™

Kirbac1.1: It's An Inward Rectifying Potassium Channel, Wayland W.L. Cheng, Decha Enkvetchakul, Colin G. Nichols

Open Access Publications

No abstract provided.

Proteomic Analyses Of Native Brain Kv4.2 Channel Complexes, Celine Marionneau, Richard D. Leduc, Henry W. Rohrs, Andrew J. Link, R. Reid Townsend, Jeanne M. Nerbonne

Open Access Publications

No abstract provided.

High-Resolution Sonography Of The Normal Extrapelvic Vas Deferens, William D. Middleton, Nirvikar Dahiya, Cathy K. Naughton, Sharlene A. Teefey, Cary A. Siegel

Open Access Publications

No abstract provided.

Phenotypic And Gene Expression Changes Among Clonal Type I Strains Of Toxoplasma Gondit, Asis Khan, Michael S. Behnke, Ildiko R. Dunay, Michael W. White, L. David Sibley

Open Access Publications

No abstract provided.

Mechanoregulation Of Proliferation, Xiaogang Jiang, Paul F. Austin, Robert A. Niederhoff, Scott R. Manson, Jacob J. Riehm, Brian L. Cook, Gina Pengue, Kanchan Chitaley, Keiko Nakayama, Keiichi I. Nakayama, Steven J. Weintraub

Open Access Publications

No abstract provided.

Mrn Complex Function In The Repair Of Chromosomal Rag-Mediated Dna Double-Strand Breaks, Beth A. Helmink, Andrea L. Bredemeyer, Baeck-Seung Lee, Ching-Yu Huang, Girdhar G. Sharma, Laura M. Walker, Jeffrey J. Bednarski, Wan-Ling Lee, Tej K. Pandita, Craig H. Bassing, Barry P. Sleckman

Open Access Publications

The Mre11-Rad50-Nbs1 (MRN) complex functions in the repair of DNA double-strand breaks (DSBs) by homologous recombination (HR) at postreplicative stages of the cell cycle. During HR, the MRN complex functions directly in the repair of DNA DSBs and in the initiation of DSB responses through activation of the ataxia telangiectasia-mutated (ATM) serine-threonine kinase. Whether MRN functions in DNA damage responses before DNA replication in G0/G1 phase cells has been less clear. In developing G1-phase lymphocytes, DNA DSBs are generated by the Rag endonuclease and repaired during the assembly of antigen receptor genes by the process of V(D)J recombination. Mice and …

Wolf, Canis Lupus, Visits To White-Tailed Deer, Odocoileus Virginianus, Summer Ranges: Optimal Foraging?, Dominic J. Demma, L. David Mech

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

We tested whether Wolf (Canis lupus) visits to individual female White-tailed Deer (Odocoileus virginianus) summer ranges during 2003 and 2004 in northeastern Minnesota were in accord with optimal-foraging theory. Using GPS collars with 10- to 30-minute location attempts on four Wolves and five female deer, plus eleven VHF-collared female deer in the Wolves’ territory, provided new insights into the frequency of Wolf visits to summer ranges of female deer. Wolves made a mean 0.055 visits/day to summer ranges of deer three years and older, significantly more than their 0.032 mean visits/day to ranges of two-year-old deer, …

Trends In Streamflow Characteristics Of Selected Sites In The Elkhorn River, Salt Creek, And Lower Platte River Basins, Eastern Nebraska, 1928–2004, And Evaluation Of Streamflows In Relation To Instream-Flow Criteria, 1953–2004, Benjamin J. Dietsch, Julie A. Godberson, Gregory V. Steele

United States Geological Survey: Publications

The Nebraska Department of Natural Resources approved instream-flow appropriations on the Platte River to maintain fish communities, whooping crane roost habitat, and wet meadows used by several wild bird species. In the lower Platte River region, the Nebraska Game and Parks Commission owns an appropriation filed to maintain streamflow for fish communities between the Platte River confluence with the Elkhorn River and the mouth of the Platte River. Because Elkhorn River flow is an integral part of the flow in the reach addressed by this appropriation, the Upper Elkhorn and Lower Elkhorn Natural Resources Districts are involved in overall management …

Geomorphic Segmentation, Hydraulic Geometry, And Hydraulic Microhabitats Of The Niobrara River, Nebraska—Methods And Initial Results, Jason S. Alexander, Ronald B. Zelt, Nathaniel J. Schaepe

United States Geological Survey: Publications

The Niobrara River of Nebraska is a geologically, ecologically, and economically significant resource. The State of Nebraska has recognized the need to better manage the surface- and ground-water resources of the Niobrara River so they are sustainable in the long term. In cooperation with the Nebraska Game and Parks Commission, the U.S. Geological Survey is investigating the hydrogeomorphic settings and hydraulic geometry of the Niobrara River to assist in characterizing the types of broad-scale physical habitat attributes that may be of importance to the ecological resources of the river system. This report includes an inventory of surface-water and ground-water hydrology …

White-Nose Syndrome Threatens The Survival Of Hibernating Bats In North America, U.S. Geological Survey

United States Geological Survey: Publications

During the winter of 2006/2007, an affliction of unknown origin dubbed “White-Nose Syndrome” (WNS) began devastating colonies of hibernating bats in a small area around Albany, New York. Colonies of hibernating bats were reduced 81-97% at the affected caves and mines that were surveyed. Since then, White-Nose Syndrome has been detected more than 700 kilometers (450 mi) away from the original site, and has infected bats in eight surrounding states. Most species of bats that hibernate in the region are now known to be affected and little brown bats (Myotis lucifugus), northern long-eared bats (M. septentrionalis), …

Mercury, Methylmercury, And Other Constituents In Sediment And Water From Seasonal And Permanent Wetlands In The Cache Creek Settling Basin And Yolo Bypass, Yolo County, California, 2005−06, Mark Marvin-Dipasquale, Charles N. Alpers, Jacob A. Fleck

United States Geological Survey: Publications

This report presents surface water and surface (top 0-2 cm) sediment geochemical data collected during 2005-2006, as part of a larger study of mercury (Hg) dynamics in seasonal and permanently flooded wetland habitats within the lower Sacramento River basin, Yolo County, California. The study was conducted in two phases. Phase I represented reconnaissance sampling and included three locations within the Cache Creek drainage basin; two within the Cache Creek Nature Preserve (CCNP) and one in the Cache Creek Settling Basin (CCSB) within the creek’s main channel near the southeast outlet to the Yolo Bypass. Two additional downstream sites within the …

Hydrodynamic Simulations Of Physical Aquatic Habitat Availability For Pallid Sturgeon In The Lower Missouri River, At Yankton, South Dakota, Kenslers Bend, Nebraska, Little Sioux, Iowa, And Miami, Missouri, 2006–07, Robert B. Jacobson, Harold E. Johnson Iii, Benjamin J. Dietsch

United States Geological Survey: Publications

The objective of this study was to assess the sensitivity of habitat availability in the Lower Missouri River to discharge variation, with emphasis on habitats that might support spawning of the endangered pallid sturgeon. We constructed computational hydrodynamic models for four reaches that were selected because of evidence that sturgeon have spawned in them. The reaches are located at Miami, Missouri (river mile 259.6–263.5), Little Sioux, Iowa (river mile 669.6–673.5), Kenslers Bend, Nebraska (river mile 743.9–748.1), and Yankton, South Dakota reach (river mile 804.8–808.4). The models were calibrated for a range of measured flow conditions, and run for a range …

Ecological Requirements For Pallid Sturgeon Reproduction And Recruitment In The Lower Missouri River: A Research Synthesis 2005–08, Aaron J. Delonay, Robert B. Jacobson, Diana M. Papoulias, Darin G. Simpkins, Mark L. Wildhaber, Joanna M. Reuter, Tom W. Bonnot, Kimberly A. Chojnacki, Carl E. Korschgen, Gerald E. Mestl, Michael J. Mac

United States Geological Survey: Publications

This report provides a synthesis of results obtained between 2005 and 2008 from the Comprehensive Sturgeon Research Program, an interagency collaboration between the U.S. Geological Survey, Nebraska Game and Parks Commission, U.S. Fish and Wildlife Service, and the U.S. Army Corps of Engineers’ Missouri River Recovery―Integrated Science Program. The goal of the Comprehensive Sturgeon Research Program is to improve fundamental understanding of reproductive ecology of the pallid sturgeon with the intent that improved understanding will inform river and species management decisions. Specific objectives include:

• Determining movement, habitat-use, and reproductive behavior of pallid sturgeon;

• Understanding reproductive physiology of pallid …

Peer Review Report 2009

United States Department of Transportation: Publications

The purpose of this document is to report findings from the research peer reviews held April 1, April 2, April 14 & April 15, 2009 for PHMSA’s Pipeline Safety Research and Development Program. The findings and recommendations in this report derive from the scoring and comments collected from the peer review panelists.

Department of Transportation (DOT) Operating Agencies (OA) are required to develop and execute a systematic process for peer reviews and for all influential and highly influential information that the OA plans to disseminate in the foreseeable future.

Through the Information Quality Act, Congress directed the Office of Management …

Uranium In Framboidal Pyrite From A Naturally Bioreduced Alluvial Sediment, Nikolla P. Qafoku, Ravi K. Kukkadapu, James P. Mckinley, Bruce W, Arey, Shelly D. Kelly, Chongmin Wang, Charles T. Resch, Philip E. Long

United States Department of Energy: Publications

Samples of a naturally bioreduced, U-contaminated alluvial sediment were characterized with various microscopic and spectroscopic techniques and wet chemical extraction methods. The objective was to investigate U association and interaction with minerals of the sediment. Bioreduced sediment comprises ∼10% of an alluvial aquifer adjacent to the Colorado River, in Rifle, CO, that was the site of a former U milling operation. Past and ongoing research has demonstrated that bioreduced sediment is elevated in solid-associated U, total organic carbon, and acid-volatile sulfide, and depleted in bioavailable Fe(III) confirming that sulfate and Fe(III) reduction have occurred naturally in the sediment. SEM/EDS analyses …

Heterogeneous Reduction Of Tc(Vii) By Fe(Ii) At The Solid–Water Interface, T. Peretyazhko, John M. Zachara, S.M. Heald, B.-H. Jeon, Ravi K. Kukkadapu, C. Liu, D. Moore, C.T. Resch

United States Department of Energy: Publications

Experiments were performed herein to investigate the rates and products of heterogeneous reduction of Tc(VII) by Fe(II) adsorbed to hematite and goethite, and by Fe(II) associated with a dithionite–citrate–bicarbonate (DCB) reduced natural phyllosilicate mixture [structural, ion-exchangeable, and edge-complexed Fe(II)] containing vermiculite, illite, and muscovite. The heterogeneous reduction of Tc(VII) by Fe(II) adsorbed to the Fe(III) oxides increased with increasing pH and was coincident with a second event of Fe²⁺_(aq) adsorption. The reaction was almost instantaneous above pH 7. In contrast, the reduction rates of Tc(VII) by DCB-reduced phyllosilicates were not sensitive to pH or to added Fe^{2+ …}

Chapter 2: Long-Term Research On Wolves In The Superior National Forest, L. David Mech

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

The seeds for the blossoming of the wolf (Canis lupus) population throughout the upper Midwest were embodied in a long line of wolves that had persisted in the central part of the Superior National Forest (SNF) of northeastern Minnesota, probably since the retreat of the last glaciers. This line of wolves had withstood not only the various natural environmental factors that had shaped them through their evolution but also the logging, fires, market hunting of prey animals, and even the bounties, aerial hunting, and poisoning that had exterminated their ancestors and their dispersed offspring only a few wolf …

Drosophila Risc Component Vig And Its Homolog Vig2 Impact Heterochromatin Formation, Elena Gracheva, Monica Dus, Sarah C. R. Elgin

Open Access Publications

No abstract provided.

Proteomic Comparison Of Entamoeba Histolytica And Entamoeba Dispar And The Role Of E. Histolytica Alcohol Dehydrogenase 3 In Virulence, Paul H. Davis, Minghe Chen, Xiaochun Zhang, C. Graham Clark, R. Reid Townsend, Samuel L. Stanley Jr.

Open Access Publications

No abstract provided.

Persistence Of Organochlorine Chemical Residues In Fish From The Tombigbee River (Alabama, Usa): Continuing Risk To Wildlife From A Former Ddt Manufacturing Facility, Jo Ellen Hinck, Ross J. Norstrom, Carl E. Orazio, Christopher J. Schmitt, Donald E. Tillitt

United States Geological Survey: Staff Publications

Organochlorine pesticide and total polychlorinated biphenyl (PCB) concentrations were measured in largemouth bass from the Tombigbee River near a former DDT manufacturing facility at McIntosh, Alabama. Evaluation of mean p,p'- and o,p'-DDT isomer concentrations and o,p'- versus p,p'-isomer proportions in McIntosh bass indicated that DDT is moving off site from the facility and into the Tombigbee River. Concentrations of p,p'-DDT isomers in McIntosh bass remained unchanged from 1974 to 2004 and were four times greater than contemporary concentrations from a national program. Total DDT in McIntosh bass exceeded dietary effect concentrations developed for bald eagle and osprey. Hexachlorobenzene, PCBs, and …

Toxicity Of Polybrominated Diphenyl Ethers (De-71) In Chicken (Gallus Gallus), Mallard (Anas Platyrhynchos), And American Kestrel (Falco Sparverius) Embryos And Hatchlings, Moira A. Mckernan, Barnett A. Rattner, Robert C. Hales, Mary Ann Ottinger

United States Geological Survey: Staff Publications

Embryonic survival, pipping and hatching success, and sublethal biochemical, endocrine, and histological endpoints were examined in hatchling chickens (Gallus gallus), mallards (Anas platyrhynchos), and American kestrels (Falco sparverius) following air cell administration of a pentabrominated diphenyl ether (penta-BDE; DE-71) mixture (0.01–20 µg/g egg) or polychlorinated biphenyl (PCB) congener 126 (3,3’,4,4’,5-pentachlorobiphenyl; 0.002 µg/g egg). The penta-BDE decreased pipping and hatching success at concentrations of 10 and 20 µg/g egg in kestrels but had no effect on survival endpoints in chickens or mallards. Sublethal effects in hatchling chickens included ethoxyresorufin-O-dealkylase (EROD) induction and histological …

Characterization Of Electrochemically Active Bacteria Utilizing A High-Throughput Voltage-Based Screening Assay, Justin C. Biffinger, Meghann Ribbens, Bradley Ringeisen, Jeremy Pietron, Steven Finkel, Kenneth Nealson

United States Navy: Publications

Metal reduction assays are traditionally used to select and characterize electrochemically active bacteria (EAB) for use in microbial fuel cells (MFCs). However, correlating the ability of a microbe to generate current from an MFC to the reduction of metal oxides has not been definitively established in the literature. As these metal reduction assays may not be generally reliable, here we describe a four- to nine-well prototype high throughput voltage-based screening assay (VBSA) designed using MFC engineering principles and a universal cathode. Bacterial growth curves for Shewanella oneidensis strains DSP10 and MR-1 were generated directly from changes in open circuit voltage …

Simultaneous Analysis Of Physiological And Electrical Output Changes In An Operating Microbial Fuel Cell With Shewanella Oneidensis, Justin C. Biffinger, Ricky Ray, Brenda J. Little, Lisa A. Fitzgerald, Meghann Ribbens, Steven E. Finkel, Bradley R. Ringeisen

United States Navy: Publications

Changes in metabolism and cellular physiology of facultative anaerobes during oxygen exposure can be substantial, but little is known about how these changes connect with electrical current output from an operating microbial fuel cell (MFC). A high-throughput voltage based screening assay (VBSA) was used to correlate current output from a MFC containing Shewanella oneidensis MR-1 to carbon source (glucose or lactate) utilization, culture conditions, and biofilm coverage over 250 h. Lactate induced an immediate current response from S. oneidensis MR-1, with both air-exposed and anaerobic anodes throughout the duration of the experiments. Glucose was initially utilized for current output by …

Ecological Effects Of Lead Mining On Ozark Streams: In-Situ Toxicity To Woodland Crayfish (Orconectes Hylas), Ann L. Allert, James F. Fairchild, Robert J. Distefano, C.J. Schmitt, William G. Brumbaugh, J.M. Besser

United States Geological Survey: Staff Publications

The Viburnum Trend mining district in southeast Missouri, USA is one of the largest producers of lead-zinc ore in the world. Previous stream surveys found evidence of increased metal exposure and reduced population densities of crayfish immediately downstream of mining sites. We conducted an in-situ 28-d exposure to assess toxicity of mining-derived metals to the woodland crayfish (Orconectes hylas). Crayfish survival and biomass were significantly lower at mining sites than at reference and downstream sites. Metal concentrations in water, detritus, macroinvertebrates, fish, and crayfish were significantly higher at mining sites, and were negatively correlated with caged crayfish survival. …

Mice Deficient In The Serine/Threonine Protein Kinase Vrk1 Are Infertile Due To A Progressive Loss Of Spermatogonia, Matthew S. Wiebe, R. Jeremy Nichols, Tyler P. Molitor, Jill K. Lindgren, Paula Traktman

Nebraska Center for Virology: Faculty Publications

The VRK1 protein kinase has been implicated as a proproliferative factor. Genetic analyses of mutant alleles of the Drosophila and Caenorhabditis elegans VRK1 homologs have revealed phenotypes ranging from embryonic lethality to mitotic and meiotic defects with resultant sterility. Herein, we describe the first genetic analysis of murine VRK1. Two lines of mice containing distinct gene-trap integrations into the Vrk1 locus were established. Insertion into intron 12 (GT12) spared VRK1 function, enabling the examination of VRK1 expression in situ. Insertion into intron 3 (GT3) disrupted VRK1 function, but incomplete splicing to the gene trap rendered this allele hypomorphic (~15% of …

University Of Nebraska- Lincoln: Fact Book 2008-2009

University of Nebraska-Lincoln Administration: Reports, Papers, Publications, and Presentations

Fact Book Table of Contents

General Information

UNL Core Values ................................. 4

Role and Mission Statement ................................................................. 5

Institutional & Professional Accreditations ............................................................. 8

UNL Organizational Chart .................................................................. 10

Student Credit Hours

SCH by College and Student Level, Fall & Spring Semesters, 5 Year Trend ....................... 11

SCH by College and Student Level, Fall Semester, 5 Year Trend ......................................... 12

SCH by College and Student Level, Spring Semester, 5 Year Trend .................................... 13

Summer Sessions Student Credit Hours .................................................. 14

Retention, Degrees and Majors

Student Retention & Graduation Rate Analysis ............................................. 15

Total Degrees Conferred by UNL Fiscal Year, 10 …

Unopa Notes 2009

UNOPA: Newsletters

No abstract provided.

Water Current, Volume 41, No. 1, Winter 2009

Water Current Newsletter

When Water Meets Money Topic of Sixth Annual Conference, April 29, 30
Meet the Faculty: Chad E. Brassil, Ph.D., Zhenghong Tan, Ph.D.
Database Connects Public to University of Nebraska Research
From the Director: Where Were You on the First Earth Day?
Arctic Lakes May Hold Clues to Understanding Climate Change
June Tour Examines California's Bay-Delta
Fall Symposium: Platte River Basin Science and Resource Management October 14 and 15 in Kearney
UNL Faculty Provide Updates to the Water Resources Advisory Panel
Through the Looking Glass: Multifaceted Fate of EmergingContaminants in Nebraska Waterways
Water Seminar Lectures Continue Through April
Get Your Water …

Detection, Occurrence, And Fate Of Emerging Contaminants In Agricultural Environments (2009), Daniel D. Snow, Shannon L. Bartelt-Hunt, Shannon Devivo, Samuel Saunders, David A. Cassada

Nebraska Water Center: Faculty Publications

Frequently studied environmental contaminants in agricultural systems include nutrients, sediments, and pesticides. These groups of contaminants typically occur at easily measured concentrations in surface run-off in agricultural watersheds. Nutrients, especially nitrogen, and pesticides have also been shown to impact ground water quality in areas susceptible to contamination. Less well-known are environmental impacts of newer classes of contaminants such as pharmaceuticals, steroids, antibiotic-resistance genes and prion proteins. These “emerging” contaminants clearly have potential to enter the environment and cause known or suspected adverse ecological or human health effects. Release of these contaminants to the environment often has occurred for quite some …

Field-Scale Cleanup Of Atrazine And Cyanazine Contaminated Soil With A Combined Chemical-Biological Approach, Manmeet Waria, Steven Comfort, Sathaporn Onanong, T. Satapanajaru, Hardiljeet Boparai, C. Harris, Daniel D. Snow, David A. Cassada

Nebraska Water Center: Faculty Publications

A former agrichemical dealership in western Nebraska was suspected of having contaminated soil. Our objective was to characterize and remediate the contaminated site by a combined chemical-biological approach. This was accomplished by creating contour maps of the on-site contamination, placing the top 60 cm of contaminated soil in windrows and mixing with a mechanical high-speed mixer. Homogenized soil containing both atrazine [6-chloro-N-ethyl-N´-isopropyl-1,3,5-triazine- 2,4-diamine] and cyanazine {2-[[4-chloro-6-(ethylamino)-1,3,5- triazin-2-yl] amino]-2-methylpropanenitrile} was then used in laboratory investigations to determine optimum treatments for pesticide destruction. Iron suspension experiments verified that zerovalent iron (Fe⁰) plus ferrous sulfate (FeSO_{4 …}