Digital Commons Network^™

The Daily Gamecock, Wednesday, February 21, 2007, University Of South Carolina, Office Of Student Media

February

No abstract provided.

An Xml-Based System For Providing Knowledge-Based Grid Services For High-Throughput Biological Imaging, Wamiq Manzoor Ahmed, Dominik Lenz, Jia Liu, J. Paul Robinson, Arif Ghafoor

Department of Electrical and Computer Engineering Technical Reports

High-throughput biological imaging uses automated imaging devices to collect a large number of microscopic images for analysis of biological systems and validation of scientific hypotheses. Efficient manipulation of these data sets for knowledge discovery requires high performance computational resources, efficient storage, and automated tools for extracting and sharing such knowledge among different research sites. Newly emerging grid technologies provide powerful means for exploiting the full potential of these imaging techniques. Efficient utilization of grid resources requires the development of knowledge-based tools and services that combine domain knowledge with analysis algorithms. In this paper we first investigate how grid infrastructure can …

Central Florida Future, Vol. 39 No. 64, February 21, 2007

Central Florida Future

No abstract provided.

Blackbird Use And Damage Of Wildlife Conservation Sunflower Plots: The Second Year, Jonathan M. Raetzman, George M. Linz, William J. Bleier

United States Department of Agriculture Wildlife Services: Staff Publications

Annual blackbird damage to sunflower is valued at $5 to $10 million. Perhaps more importantly, the National Sunflower Association has identified blackbirds as the key reason for growers to abandon sunflower in areas of prime production. North Dakota and South Dakota together produce approximately 70% of sunflower grown in the United States. This crop adds $906 million to the regional economy. To date, cost effective and environmentally safe methods to reduce bird damage to sunflower remain elusive. In the 1980’s, scientists from the National Wildlife Research Center (NWRC) showed that “decoy” sunflower plots can greatly reduce bird damage to local …

The Eastern Echo, February 21, 2007, Eastern Michigan University

EMU Student Newspaper: The Normal News & The Eastern Echo

No abstract provided.

The Spinnaker Vol. 30 No. 23, University Of North Florida

Spinnaker

Student newspaper for the UNF community.

Crystalline Order On Riemannian Manifolds With Variable Gaussian Curvature And Boundary, Mark Bowick, Luca Giomi

Physics - All Scholarship

We investigate the zero temperature structure of a crystalline monolayer constrained to lie on a two-dimensional Riemannian manifold with variable Gaussian curvature and boundary. A full analytical treatment is presented for the case of a paraboloid of revolution. Using the geometrical theory of topological defects in a continuum elastic background we find that the presence of a variable Gaussian curvature, combined with the additional constraint of a boundary, gives rise to a rich variety of phenomena beyond that known for spherical crystals. We also provide a numerical analysis of a system of classical particles interacting via a Coulomb potential on …

Multiple Diseases In Carrier Probability Estimation: Accounting For Surviving All Cancers Other Than Breast And Ovary In Brcapro, Hormuzd A. Katki, Amanda Blackford, Sining Chen, Giovanni Parmigiani

Johns Hopkins University, Dept. of Biostatistics Working Papers

Mendelian models can predict who carries an inherited deleterious mutation of known disease genes based on family history. For example, the BRCAPRO model is commonly used to identify families who carry mutations of BRCA1 and BRCA2, based on familial breast and ovarian cancers. These models incorporate the age of diagnosis of diseases in relatives and current age or age of death. We develop a rigorous foundation for handling multiple diseases with censoring. We prove that any disease unrelated to mutations can be excluded from the model, unless it is sufficiently common and dependent on a mutation-related disease time. Furthermore, if …

Power Boosting In Genome-Wide Studies Via Methods For Multivariate Outcomes, Mary J. Emond

UW Biostatistics Working Paper Series

Whole-genome studies are becoming a mainstay of biomedical research. Examples include expression array experiments, comparative genomic hybridization analyses and large case-control studies for detecting polymorphism/disease associations. The tactic of applying a regression model to every locus to obtain test statistics is useful in such studies. However, this approach ignores potential correlation structure in the data that could be used to gain power, particularly when a Bonferroni correction is applied to adjust for multiple testing. In this article, we propose using regression techniques for misspecified multivariate outcomes to increase statistical power over independence-based modeling at each locus. Even when the outcome …

Toxic Pollution In Casco Bay: Sources And Impacts, Casco Bay Estuary Partnership

Publications

This report complements and expands upon the information in the 2005 Casco Bay Estuary Partnership report State of the Bay. This current report, Toxic Pollution in Casco Bay, details studies undertaken by Casco Bay Estuary Partnership (CBEP) and others on some of the sources of toxic chemicals entering the Bay and its watershed, on the impacts of toxic chemicals on Casco Bay wildlife, and on potential risks to human consumers of fish and shellfish. The report does not, however, address groundwater pollution and drinking water issues. The report conludes with ways that CBEP and partner organizations are working …

02/20/2007 - Eiu Faculty Share More Than $16,000 In Idnr Research Grant Money, University Marketing And Communications

2007

No abstract provided.

Ua12/2/1 College Heights Herald, Vol. 82, No. 34, Wku Student Affairs

WKU Administration Documents

WKU campus newspaper reporting campus, athletic and Bowling Green, Kentucky news.

The New Hampshire, Vol. 96 [97], No. 33 (Feb. 20, 2007), The New Hampshire

The New Hampshire Print Edition

An independent student produced newspaper from the University of New Hampshire. This volume was printed as 96, but it is the 97th volume in the series. This was corrected in pencil.

A Cohort Study Of Reproductive And Hormonal Factors And Renal Cell Cancer Risk In Women, Gc Kabat, Stephanie A. Navarro Silvera, Ab Miller, Te Rohan

Department of Public Health Scholarship and Creative Works

We examined the association of reproductive and hormonal factors with renal cell cancer risk in a cohort study of 89 835 Canadian women. Compared with nulliparous women, parous women were at increased risk (hazard ratio (HR) 1.78, 95% confidence interval (CI) 1.02–3.09), and there was a significant gradient of risk with increasing levels of parity: relative to nulliparous women, women who had X5 pregnancies lasting 4 months or more had a 2.4-fold risk (HR 1⁄4 2.41, 95% CI 1⁄4 1.27–4.59, P for trend 0.01). Ever use of oral contraceptives was associated with a modest reduction in risk. No associations were …

The Hilltop 2-20-2007, Hilltop Staff

The Hilltop: 2000 - 2010

No abstract provided.

Supplementary Data For “Sequence And Annotation Of The 369-Kb Ny-2a And The 345-Kb Ar158 Viruses That Infect Chlorella Nc64a”: Appendix A: Gene Names B002r – B797r, Lisa A. Fitzgerald, Michael V. Graves, Xiao Li, Tamara Feldblyum, William C. Nierman, James L. Van Etten

Nebraska Center for Virology: Faculty Publications

Appendix A: Gene Names b002R – b797R

Document shows Gene Name, Genome Position, A.A. length, Peptide Mw, pI, CDD Hit Number, COGs, COG Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, Hit from-to, BLASTp Hit Number, Hit Accession, BLASTp Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, and Hit from-to.

Supplementary Data For “Sequence And Annotation Of The 314-Kb Mt325 And The 321-Kb Fr483 Viruses That Infect Chlorella Pbi”: Appendix B: Gene Names M001l Through M807r, Lisa A. Fitzgerald, Michael V. Graves, Xiao Li, Tamara Feldblyum, James Hartigan, James L. Van Etten

Nebraska Center for Virology: Faculty Publications

Appendix B: Gene Names M001L through M807R

Document, in spreadsheet format, shows Gene Name, Genome Position, A.A. length, Peptid e Mw, pI, CDD Hit Number, COGs, COG Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, Hit from-to, BLASTp Hit Number, Hit Accession, BLASTp Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, and Hit from-to.

Supplementary Data For “Sequence And Annotation Of The 369-Kb Ny-2a And The 345-Kb Ar158 Viruses That Infect Chlorella Nc64a”: Appendix C: Gene Names C001r – C814l, Lisa A. Fitzgerald, Michael V. Graves, Xiao Li, Tamara Feldblyum, William C. Nierman, James L. Van Etten

Nebraska Center for Virology: Faculty Publications

Appendix C: Gene Names c001R – c814L

Document shows Gene Name, Genome Position, A.A. length, Peptide Mw, pI, CDD Hit Number, COGs, COG Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, Hit from-to, BLASTp Hit Number, Hit Accession, BLASTp Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, and Hit from-to.

Supplementary Data For “Sequence And Annotation Of The 369-Kb Ny-2a And The 345-Kb Ar158 Viruses That Infect Chlorella Nc64a”: Appendix B: Gene Names B001l – B886r, Lisa A. Fitzgerald, Michael V. Graves, Xiao Li, Tamara Feldblyum, William C. Nierman, James L. Van Etten

Nebraska Center for Virology: Faculty Publications

Appendix B: Gene Names B001L – B886R

Document shows Gene Name, Genome Position, A.A. length, Peptide Mw, pI, CDD Hit Number, COGs, COG Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, Hit from-to, BLASTp Hit Number, Hit Accession, BLASTp Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, and Hit from-to.

Sequence And Annotation Of The 314-Kb Mt325 And The 321-Kb Fr483 Viruses That Infect Chlorella Pbi, Lisa A. Fitzgerald, Michael V. Graves, Xiao Li, Tamara Feldblyum, James Hartigan, James L. Van Etten

Nebraska Center for Virology: Faculty Publications

Viruses MT325 and FR483, members of the family Phycodnaviridae, genus Chlorovirus, infect the fresh water, unicellular, eukaryotic, chlorella-like green alga, Chlorella Pbi. The 314,335-bp genome of MT325 and the 321,240-bp genome of FR483 are the first viruses that infect Chlorella Pbi to have their genomes sequenced and annotated. Furthermore, these genomes are the two smallest chlorella virus genomes sequenced to date, MT325 has 331 putative protein-encoding and 10 tRNA-encoding genes and FR483 has 335 putative protein-encoding and 9 tRNA-encoding genes. The protein-encoding genes are almost evenly distributed on both strands, and intergenic space is minimal. Approximately 40% of …

Seasonal Changes In Allocation, Growth, And Photosynthetic Responses Of The Submersed Macrophyte Egeria Densa Planch. (Hydrocharitaceae) From Oregon And California, Toni Garrett Pennington

Dissertations and Theses

Many rooted macrophytes form a dense canopy on the water surface that is detrimental to aquatic organisms, water quality, navigation, and recreation. Control of invasive macrophytes may be improved when management activities are linked to the plant's biology. The purpose of this research was to evaluate seasonal changes in the morphology, growth rates, allocation patterns and photosynthetic responses of a clonal submersed macrophyte. Egeria densa Planch. (Hydrocharitaceae) is highly invasive in the USA where it forms dense surface canopies in freshwater ecosystems. Using E. densa the following hypotheses were evaluated: (1) flowering stems have reduced capacity for vegetative growth as …

Agile Spectral Interferometric Microscopy, Nabeel Riza, Amana Bokhari, Frank Perez

UCF Patents

An agile optical sensor based on spectrally agile heterodyne optical interferometric confocal microscopy implemented via an ultra-stable in-line acousto-optic tunable filter (AOTF) based interferometer using double anisotropic acousto-optic Bragg diffraction. One embodiment uses a tunable laser as the light source while other embodiments use a broadband source or a fixed wavelength laser as the source. One embodiment uses anisotropic diffractions in an AOTF to generate two near-collinear orthogonal linear polarization and slightly displaced beams that both pass via a test sample to deliver highly sensitive sample birefringence or material optical retardation measurements. A spherical lens is used to form focused …

Supplementary Data For “Sequence And Annotation Of The 314-Kb Mt325 And The 321-Kb Fr483 Viruses That Infect Chlorella Pbi”: Appendix A: Gene Names M002r Through M843l, Lisa A. Fitzgerald, Michael V. Graves, Xiao Li, Tamara Feldblyum, James Hartigan, James L. Van Etten

Nebraska Center for Virology: Faculty Publications

Appendix A: Gene Names m002R through m843L

Document, in spreadsheet format, shows Gene Name, Genome Position, A.A. length, Peptid e Mw, pI, CDD Hit Number, COGs, COG Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, Hit from-to, BLASTp Hit Number, Hit Accession, BLASTp Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, and Hit from-to.

Supplementary Data For “Sequence And Annotation Of The 314-Kb Mt325 And The 321-Kb Fr483 Viruses That Infect Chlorella Pbi”: Appendix C: Gene Names N001l Through N849r, Lisa A. Fitzgerald, Michael V. Graves, Xiao Li, Tamara Feldblyum, James Hartigan, James L. Van Etten

Nebraska Center for Virology: Faculty Publications

Appendix C: Gene Names n001L through n849R

Document, in spreadsheet format, shows Gene Name, Genome Position, A.A. length, Peptid e Mw, pI, CDD Hit Number, COGs, COG Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, Hit from-to, BLASTp Hit Number, Hit Accession, BLASTp Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, and Hit from-to.

Sequence And Annotation Of The 369-Kb Ny-2a And The 345-Kb Ar158 Viruses That Infect Chlorella Nc64a, Lisa A. Fitzgerald, Michael V. Graves, Xiao Li, Tamara Feldblyum, Willaim C. Nierman, James L. Van Etten

Nebraska Center for Virology: Faculty Publications

Viruses NY-2A and AR158, members of the family Phycodnaviridae, genus Chlorovirus, infect the fresh water, unicellular, eukaryotic, chlorella-like green alga, Chlorella NC64A. The 368,683-bp genome of NY-2A and the 344,690-bp genome of AR158 are the two largest chlorella virus genomes sequenced to date; NY-2A contains 404 putative protein-encoding and 7 tRNA-encoding genes and AR158 contains 360 putative protein-encoding and 6 tRNA-encoding genes. The protein-encoding genes are almost evenly distributed on both strands, and intergenic space is minimal. Two of the NY-2A genes encode inteins, the large subunit of ribonucleotide reductase and a superfamily II helicase. These are the …

Supplementary Data For “Sequence And Annotation Of The 314-Kb Mt325 And The 321-Kb Fr483 Viruses That Infect Chlorella Pbi”: Appendix D: Gene Names N003l Through N847r, Lisa A. Fitzgerald, Michael V. Graves, Xiao Li, Tamara Feldblyum, James Hartigan, James L. Van Etten

Nebraska Center for Virology: Faculty Publications

Appendix D: Gene Names N003L through N847R

Document, in spreadsheet format, shows Gene Name, Genome Position, A.A. length, Peptid e Mw, pI, CDD Hit Number, COGs, COG Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, Hit from-to, BLASTp Hit Number, Hit Accession, BLASTp Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, and Hit from-to.

Supplementary Data For “Sequence And Annotation Of The 369-Kb Ny-2a And The 345-Kb Ar158 Viruses That Infect Chlorella Nc64a”: Appendix D: Gene Names C006r – C815l, Lisa A. Fitzgerald, Michael V. Graves, Xiao Li, Tamara Feldblyum, Willaim C. Nierman, James L. Van Etten

Nebraska Center for Virology: Faculty Publications

Appendix D: Gene Names C006R – C815L

Document shows Gene Name, Genome Position, A.A. length, Peptide Mw, pI, CDD Hit Number, COGs, COG Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, Hit from-to, BLASTp Hit Number, Hit Accession, BLASTp Definition, Bit Score, E-value, % Identity, % Positive, Query from-to, and Hit from-to.

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The George-Anne

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Rethinking Visitation: From A Parental To A Relational Right , Ayelet Blecher-Prigat

ExpressO

The article proposes a new understanding of the right to visitation that challenges the common understanding of the right to visitation as a parental right and as an integral component of the cluster of rights associated with parental status. Instead, it suggests that visitation be understood as an independent right based on relational values. Understanding visitation as a parental right marginalizes relational values and thwarts the development of a coherent theory of visitation. The absence of such a theory could account for the perplexity plaguing visitation issues. Detaching visitation from the cluster of rights associated with parental status and constructing …

02-19-2007 Three Science & Math Workshops Coming To Swosu, Southwestern Oklahoma State University

THE BARK ARCHIVE 2007

Southwestern Oklahoma State University Chemistry Professor Dr. Brian Campbell is going to be a busy man during the 2007 summer, and area students and teachers will have the opportunity to benefit from his upcoming activities.