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Predicting Biomass Partitioning To Root Versus Shoot In Corn And Velvetleaf (Abutilon Theophrasti), Kimberly D. Bonifas, John L. Lindquist

Department of Agronomy and Horticulture: Faculty Publications

Knowledge of how plants will partition their new biomass will aid in understanding competition between crops and weeds. This study determined if the amount of biomass partitioned to the root versus the shoot can be predicted from tissue carbon [C] and nitrogen [N] concentrations and the daily gain in C (G_C) and N (G_N) for each unit shoot and root biomass, respectively. Pots measuring 28 cm diameter and 60 cm deep were embedded in the ground, and each contained one plant of either corn or velvetleaf. Each plant received one of three nitrogen treatments: 0, 1, …

Plant Breeding Training In The U.S., P. Stephen Baenziger

Department of Agronomy and Horticulture: Faculty Publications

The plant breeding enterprise is large and highly interdisciplinary. In considering how to approach this topic, it is necessary to define who is a plant breeder for that defines the scope of this paper. For the purpose of this paper, a plant breeder will be defined as a person who is actively involved in creating new plant germplasm that may lead to new cultivars or be used as parents to create new cultivars of food, feed, fiber, and ornamental plants. This definition is deliberately narrow. For example it does not include those who are developing molecular markers for marker assisted …

Soybean Cultivars Resulted From More Recombination Events Than Unselected Lines In The Same Population, T. R. Stefaniak, D. L. Hyten Jr., V. R. Pantalone, A. Klarer, T. W. Pfeiffer

Department of Agronomy and Horticulture: Faculty Publications

The selection of superior adapted cultivars has contributed to the doubling of soybean [Glycine max (L.) Merr.] yields in the USA since 1930. Genetic variation was required for this selection to be effective. The objective of this study was to evaluate the importance of homologous chromosome meiotic recombination in the creation of soybean cultivars. A set of 10 adapted high-yielding cultivars selected from the cross ‘Williams’ × ‘Essex’ was com-pared with a set of 156 random recombinant inbred lines (RILs) from the same population. Crossover events were identified using 143 simple sequence repeat (SSR) markers span-ning all 20 soybean …

Impacts Of Genetic Bottlenecks On Soybean Genome Diversity, D. L. Hyten, Qijian Song, Youlin Zhu, Ik-Young Choi, Randall L. Nelson, Jose M. Costa, James E. Specht, Randy C. Shoemaker, Perry B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

Soybean has undergone several genetic bottlenecks. These include domestication in Asia to produce numerous Asian landraces, introduction of relatively few landraces to North America, and then selective breeding over the past 75 years. It is presumed that these three human-mediated events have reduced genetic diversity. We sequenced 111 fragments from 102 genes in four soybean populations representing the populations before and after genetic bottlenecks. We show that soybean has lost many rare sequence variants and has undergone numerous allele frequency changes throughout its history. Although soybean genetic diversity has been eroded by human selection after domestication, it is notable that …

Ethylene Could Influence Ferric Reductase, Iron Transporter, And H+-Atpase Gene Expression By Affecting Fer (Or Fer-Like) Gene Activity, Carlos Lucera, Brian M. Waters, Francisco Javier Romera, María José García, María Morales, Esteban Alcántara, Rafael Pérez-Vicente

Department of Agronomy and Horticulture: Faculty Publications

In previous works, it has been shown, by using ethylene inhibitors and precursors, that ethylene could participate in the regulation of the enhanced ferric reductase activity of Fe-deficient Strategy I plants. However, it was not known whether ethylene regulates the ferric reductase gene expression or other aspects related to this activity. This paper is a study of the effects of ethylene inhibitors and precursors on the expression of the genes encoding the ferric reductases and iron transporters of Arabidopsis thaliana (FRO2 and IRT1) and Lycopersicon esculentum (= Solanum lycopersicum) (FRO1 and IRT1) plants. The effects …

Circular Ultrasound Compounding By Designed Matrix Weighting, Gregory Bashford, Jonathan Morse

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Spatial compounding is an imaging technique that aims to improve image contrast by combining partially decorrelated images acquired at different angles or positions. In conventional spatial compounding, data sets are combined with equal weighting. Here, we describe an alternative method of reconstruction using algorithms which weight the data based on a “quality” matrix. The quality matrix is derived from beam-forming characteristics. For each data set, the reliability of the data is assumed to vary spatially. By compounding the data based on the quality matrix, a complete image is formed. Here, we describe the construction of a rotational translation stage and …

Variable Upper And Lower Crop Water Stress Index Baselines For Corn And Soybean, J. O. Payero, Suat Irmak

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Upper and lower crop water stress index (CWSI) baselines adaptable to different environments and times of day are needed to facilitate irrigation scheduling with infrared thermometers. The objective of this study was to develop dynamic upper and lower CWSI baselines for corn and soybean. Ten-minute averages of canopy temperatures from corn and soybean plots at four levels of soil water depletion were measured at North Platte, Nebraska, during the 2004 growing season. Other variables such as solar radiation (R_s), air temperature (T_a), relative humidity (RH), wind speed (u), and plant canopy height (h) were …

Use Of Time Domain Reflectometry For Continuous Monitoring Of Nitrate-Nitrogen In Soil And Water, J. O. Payero, David D. Tarkalson, Suat Irmak

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Nitrate-Nitrogen (NO₃-N) losses to ground and surface water are an environmental and agronomic concern in modern crop production systems in the Central Great Plains. Monitoring techniques for nitrogen use in agricultural production are needed to increase crop yield, optimize nitrogen use, and reduce NO₃-N leaching. Time domain reflectometry (TDR) could potentially be calibrated to continuously measure NO₃-N in soil and water. The objectives of this study were to: (1) evaluate the effect of different factors affecting the response of the bulk electrical conductivity (ECb) sensed by TDR, (2) compare the sensitivity and differences between …

Land Application Of Manure For Beneficial Reuse, L. M. Risse, M. L. Cabrera, A. J. Franzluebbers, J. W. Gaskin, John E. Gilley, R. Killorn, D. E. Radcliffe, W. E. Tollner, H. Zhang

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The concentration of animal production systems has increased efficiency and improved overall economic return for animal producers. This concentration, along with the advent of commercial fertilizers, has led to a change in the way animal producers view manure. Manure, once valued as a resource by farmers, is now treated as a waste. Air and water quality concerns that arise primarily from the under-utilization or inefficient use of manure contribute to these changing views. However, when properly used, manure is a resource and should be regulated as such. In the United States, the USDA/EPA Unified National Strategy for Animal Feeding Operations …

Properties Of Chitosan Films As A Function Of Ph And Solvent Type, Ki Myong Kim, Jeong Hwa Son, Sung-Koo Kim, Curtis L. Weller, Milford Hanna

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Two different deacetylated chitosans were dissolved in formic, acetic, lactic, or propionic acid to prepare chitosan films. The pH values of the film-forming solutions were adjusted to 3, 4, and 5. Water vapor permeability (WVP), tensile strength (TS), elongation (E), and total soluble matter (TSM) were significantly (P < 0.05) affected by acid type, pH, and degree of deacetylation (DA). Low DA (LDA) chitosan films had lower WVP and TSM, higher TS compared with high DA (HDA) chitosan films. The E values were not affected by DA. As pH increased, WVP and TSM of chitosan films tended to increase while TS decreased significantly (P < 0.05). Chitosan films with acetic and propionic acid solvents had low WVP and TSM and high TS, while films with lactic acid solvent had high E and TSM and the lowest TS. Fourier-transform infrared showed peak shifting in the spectra with different solvents and at different pH values. Chitosan films with lactic acid solvent showed a peak shift to a lower frequency range. The NH3+ band was absent in the pH 5.0 chitosan film spectra.

Modeling Of Transport Phenomena And Melting Kinetics Of Starch In A Co-Rotating Twin-Screw Extruder, Lijun Wang, David D. Jones, Curtis L. Weller, Milford Hanna

Department of Agricultural and Biological Systems Engineering: Faculty Publications

A mathematical model was developed to simulate fluid flow, heat transfer, and melting kinetics of starch in a co-rotating intermeshing twin-screw extruder (TSE). The partial differential equations governing the transport phenomena of the biomaterial in the extruder were solved by a finite element scheme. For validating the model, the predicted product pressure, bulk temperature at the entrance of the die, and minimum residence time of the biomaterial in the extruder were compared with experimental data. Standard errors of product pressure, bulk temperature at the die entrance, and minimum residence time were about 8.8, 2.8, and 17.3%. Simulations were carried out …

Impact Of Tillage And Placement Of Terbufos Insecticide Runoff, Mitiku Mamo, William L. Kranz, Elaine R. Douskey, Shripat T. Kamble, John F. Witkowski

Department of Agricultural and Biological Systems Engineering: Faculty Publications

On a national scale, the damage caused by corn rootworm (Diabrotica virgifera virgifera LeConte), can cause economic loss of up to $650 million annually. To limit these losses, corn producers apply terbufos insecticide to approximately 11% of all corn acres at a time when there is a high probability of intense precipitation. When combined with low vegetative cover and disturbed soil surfaces, there is a high potential for terbufos transport into surface water bodies. Increased public concern for environmental contamination from the use of agricultural chemicals has prompted many crop growers to look for crop production practices that minimize …

Nonintrusive Mapping Of Near-Surface Preferential Flow, R. S. Freeland, Lameck O. Odhiambo, J. S. Tyner, J. T. Ammons, W. C. Wright

Department of Agricultural and Biological Systems Engineering: Faculty Publications

A unique survey protocol has been developed that maps near-subsurface preferential flow using integrated ground-penetrating radar (GPR) and a differential geographical positioning system (DGPS). The survey protocol consists of a mobile GPR system that spirals outward along a prescribed course, continuously gathering subsurface data for an extended period. Metered water is applied to a centrally located water-ponding ring, after first capturing the initial dry-state pattern signatures. The water radiates outward beneath the surface as it follows preferential flow pathways, which the GPR instrumentation spiraling above highlights. After data are collected, pre- and post-water time-elapsed images profiles are segmented by pattern …

Purification And Scale-Up Of A Recombinant Heavy Chain Fragment C Of Botulinum Neurotoxin Serotype E In Pichia Pastoris Gs115, Michael P. Dux, Rick Barent, Jayanta Sinha, Mark Gouthro, Todd Swanson, Ardis Barthuli, Mehmet Inan, John T. Ross, Leonard A. Smith, Theresa J. Smith, Robert Webb, Bonnie Loveless, Ian Henderson, Michael M. Meagher

Michael Meagher Publications

A recombinant C-terminus heavy chain fragment from botulinum neurotoxin serotype E (BoNT/E) is proposed as a vaccine against the serotype E neurotoxin. This fragment, rBoNTE(H_c), was produced intracellular in Pichia pastoris GS115 by a three-step fermentation process, i.e., glycerol batch phase and a glycerol fed-batch phase to achieve high cell densities, followed by a methanol fed-batch induction phase. The rBoNTE(H_c) protein was purified from the soluble fraction of cell lysates using three ion-exchange chromatography steps (SP Sepharose Fast Flow, Q Sepharose Fast Flow, Sp Sepharose High Performance) and polished with a hydrophobic charge induction chromatography step …

Interference Effects In The Memory For Serially Presented Locations In Clark’S Nutcrackers, Nucifraga Columbiana, Jody L. Lewis, Alan C. Kamil

Papers in Behavior in Biological Sciences

The authors tested the spatial memory of serially presented locations in Clark’s nutcrackers (Nucifraga columbiana). Birds were serially presented with locations in an open room. The authors buried a seed in a sand-filled cup at each location and then tested nutcrackers for their memory for each location in the list by using the cluster method. For each item in the list, the authors opened a cluster of 6 holes. Accuracy was measured by how many tries were required for the bird to find the correct location within each cluster. In Experiments 1 and 2, the authors presented 2 …

Social Play In Kakapo (Strigops Habroptilus) With Comparisons To Kea (Nestor Notabilis) And Kaka (Nestor Meridionalis), Judy Diamond, Daryl Eason, Clio Reid, Alan B. Bond

Papers in Behavior in Biological Sciences

The play behavior of the critically endangered kakapo (Strigops habroptilus; Aves: Psittaciformes: Psittacidae) is here compared to that of its closest relatives, the kea (Nestor notabilis) and the kaka (Nestor meridionalis). Contrasting kakapos, which are relatively solitary, with the more social Nestor parrots provides an attractive test of the relative contributions of phylogeny and sociality to the evolution of play. Overlapping cluster analysis of play sequences using a hypergeometric similarity metric indicated that kakapo play is generally less complex, lacking the intensity, duration, structure, and reciprocity of play in the Nestor parrots. Kakapos have …

Selective Attention, Priming, And Foraging Behavior, Alan Kamil, Alan B. Bond

Papers in Behavior in Biological Sciences

Animals selectively filter and transform their sensory input, increasing the accuracy with which some stimuli are detected and effectively ignoring others. This filtering process, collectively referred to as “selective attention,” takes place at a variety of different levels in the nervous system. It was described in considerable detail by William James over a century ago (James, 1890/1950) and has been a principal focus of research in cognitive psychology for nearly 50 years (Parasuraman & Davies, 1984; Pashler, 1998; Richards, 1998). Investigations of selective attention have also been central to the study of animal cognition, where the process of attention has …

S-Adenosylmethionine Stabilizes Cystathionine Β-Synthase And Modulates Redox Capacity, Anna Prudova, Zachary Bauman, Aaron Braun, Victor Vitvitsky, Shelly C. Lu, Ruma Banerjee

Department of Biochemistry: Faculty Publications

The transsulfuration pathway converts homocysteine to cysteine and represents the metabolic link between antioxidant and methylation metabolism. The first and committing step in this pathway is catalyzed by cystathionine β-synthase (CBS), which is subject to complex regulation, including allosteric activation by the methyl donor, S-adenosylmethionine (AdoMet). In this study, we demonstrate that methionine restriction leads to a >10-fold decrease in CBS protein levels, and pulse proteolysis studies reveal that binding of AdoMet stabilizes the protein against degradation by ≈12 kcal/mol. These observations predict that under pathological conditions where AdoMet levels are diminished, CBS, and therefore glutathione levels, will be reduced. …

Microsatellite Genotyping To Distinguish Colonies And Intraspecies Genetic Variation In The Eastern Subterranean Termite, Reticulitermes Flavipes (Isoptera: Rhinotermitidae), Timothy J. Husen, Shripat T. Kamble, Julie M. Stone

Department of Biochemistry: Faculty Publications

Microsatellite markers and fingerprinting techniques have demonstrated great potential for assessing colony affiliation in Reticulitermes species. This study utilized microsatellite allele fingerprints and examined variation at eight micro satellite loci within five different R. flavipes collection sites in each of Lancaster and Madison counties in Nebraska. In the termite populations from Lancaster County, five of the eight microsatellite loci (Rf 1-3, Rf 3-1, Rf 5-1 0, Rf 6-1, and Rf 24-2) provided informative genotypic variability allowing colony distinction. DNA sequence data at locus Rf24-2 also provided conclusive evidence that populations sampled were distinct colonies. Five micro satellite loci (Rf 3-1, …

Purification And Initial Biochemical Characterization Of Atp:Cob(I)Alamin Adenosyltransferase (Eutt) Enzyme Of Salmonella Enterica, Nicole R. Baun, Jorge C. Escalante-Semerena

Department of Biochemistry: Faculty Publications

ATP:cob(I)alamin adenosyltransferase (EutT) of Salmonella

enterica was overproduced and enriched to ~70% homogeneity,

and its basic kinetic parameters were determined. Abundant

amounts of EutT protein were produced, but all of it remained

insoluble. Soluble active EutT protein (~70% homogeneous) was

obtained after treatment with detergent. Under conditions in which

cobalamin (Cbl) was saturating, _Km(ATP) = 10 µM, k_cat = 0.03 s^-1,

and V_max = 54.5 nM min^-1. Similarly, under conditions in which

MgATPwas saturating,K_m(Cbl) = 4.1µM, k_cat = 0.06 s^-1, andV_max= …

Sex-Specific Expression Of Alternative Transcripts In Drosophila, Lauren Mcintyre, Lisa Bono, Anne Genissel, Rick Westerman, Damion Junk, Marina Telonis-Scott, Lawrence G. Harshman, Marta Wayne, Artyom Kopp, Sergey V. Nuzhdin

School of Biological Sciences: Faculty Publications

Background: Many genes produce multiple transcripts due to alternative splicing or utilization of alternative transcription initiation/termination sites. This 'transcriptome expansion' is thought to increase phenotypic complexity by allowing a single locus to produce several functionally distinct proteins. However, sex, genetic and developmental variation in the representation of alternative transcripts has never been examined systematically. Here, we describe a genome-wide analysis of sex-specific expression of alternative transcripts in Drosophila melanogaster.

Results: We compared transcript profiles in males and females from eight Drosophila lines (OregonR and 2b, and 6 RIL) using a newly designed 60-mer oligonucleotide microarray that allows us …

Effects Of Food Type, Feeding Frequency, And Temperature On Juvenile Survival And Growth Of Marisa Cornuarietis (Mollusca: Gastropoda), Henriette Selck, John Aufderheide, Nadine Pounds, Charles Staples, Norbert Caspers, Valery E. Forbes

Valery Forbes Publications

The present experiments are part of a larger study designed to investigate the influence of husbandry parameters on the life history of the ramshorn snail, Marisa cornuarietis, in order to identify suitable husbandry conditions for maintaining multi-generation populations in the laboratory for use in ecotoxicological testing. In this paper we focus on the effects of a combination of food types and feeding frequencies (i.e., the frequency with which the snails were offered food) on juvenile growth and survival at different temperatures. Offspring produced in the laboratory by wild specimens of M. cornuarietis, from Puerto Rico, were used to …

Effects Of Husbandry Parameters On The Life-History Traits Of The Apple Snail, Marisa Cornuarietis: Effects Of Temperature, Photoperiod, And Population Density, John Aufderheide, Ryan Warbritton, Nadine Pounds, Sharon File-Emperador, Charles Staples, Norbert Caspers, Valery E. Forbes

Valery Forbes Publications

These experiments are part of a larger study designed to investigate the influence of husbandry parameters on the life history of the apple snail, Marisa cornuarietis. The overall objective of the program is to identify suitable husbandry conditions for maintaining multigeneration populations of this species in the laboratory for use in ecotoxicological testing. In this article, we focus on the effects of photoperiod, temperature, and population density on adult fecundity and juvenile growth. Increasing photoperiod from 12 to 16 h of light per day had no effect on adult fecundity or egg hatching and relatively minor effects on juvenile growth …

Influence Of Biotransformation On Trophic Transfer Of The Pah, Fluoranthene, Annemette Palmqvist, Lene Juel Rasmussen, Valery E. Forbes

Valery Forbes Publications

The persistence of polycyclic aromatic hydrocarbons (PAHs) in marine sediments may be influenced by benthic invertebrate bioturbation. Through processes such as deposit-feeding and enhancement of microbial metabolic activity PAHs may be remobilized from the sediment compartment, and either transferred to organisms at higher trophic levels or to the overlying water column, both processes inevitably changing the bioavailability of the PAH. Accumulation of contaminants from one level in the food chain to the next depends on feeding rate and assimilation efficiency, two factors that basically vary with food quality and contaminant type. Though it is generally believed that pre-consumptive biotransformation will …

Effects On The Function Of Three Trophic Levels In Marine Plankton Communities Under Stress From The Antifouling Compound Zinc Pyrithione, M. Hjorth, I. Dahllöf, Valery E. Forbes

Valery Forbes Publications

This study aimed to investigate functional responses of natural marine planktonic communities to stress from the antifouling compound zinc pyrithione (ZPT). Isotope labelling techniques (¹⁴C) were applied to study bacterial incorporation of leucine, photosynthetic activity of phytoplankton and grazing of labelled prey by zooplankton communities for 6 days after exposures to nominal concentrations of 0, 5, 25, 50 nM ZPT in a mesocosm experiment in Isefjord, Denmark.

Significant direct effects were visible on chlorophyll α concentrations, which decreased in all exposed communities, to between 48 and 36% of control concentrations on Day 3, 1 day after the last …

Wing Dimorphism In Aphids, Christian Braendle, Gregory K. Davis, Jennifer A. Brisson, David L. Stern

School of Biological Sciences: Faculty Publications

Many species of insects display dispersing and nondispersing morphs. Among these, aphids are one of the best examples of taxa that have evolved specialized morphs for dispersal versus reproduction. The dispersing morphs typically possess a full set of wings as well as a sensory and reproductive physiology that is adapted to flight and reproducing in a new location. In contrast, the nondispersing morphs are wingless and show adaptations to maximize fecundity. In this review, we provide an overview of the major features of the aphid wing dimorphism. We first provide a description of the dimorphism and an overview of its …

Spillover Of Agriculturally Subsidized Predators As A Potential Threat To Native Insect Herbivores In Fragmented Landscapes, Tatyana A. Rand, Svata M. Louda

School of Biological Sciences: Faculty Publications

Habitat loss and fragmentation can have strong negative impacts on populations of some native species. Spillover of generalist natural enemies from the surrounding landscape matrix is one mechanism potentially generating such effects, yet this has been rarely studied in insects. We examined the influence of habitat conversion to agriculture on the abundance and potential effects of predatory coccinellid beetles on native insect herbivores within 12 grassland remnants in central Nebraska (U.S.A.). Results of sweep sampling revealed that coccinellids were three to six times more abundant at native grassland sites embedded within cropland- dominated landscapes compared with control sites in grassland-dominated …

The Pea Aphid, Acyrthosiphon Pisum: An Emerging Genomic Model System For Ecological, Developmental, And Evolutionary Studies, Jennifer A. Brisson, David L. Stern

School of Biological Sciences: Faculty Publications

Aphids display an abundance of adaptations that are not easily studied in existing model systems. Here we review the biology of a new genomic model system, the pea aphid, Acyrthosiphon pisum. We then discuss several phenomena that are particularly accessible to study in the pea aphid: the developmental genetic basis of polyphenisms, aphid–bacterial symbioses, the genetics of adaptation and mechanisms of virus transmission. The pea aphid can be maintained in the laboratory and natural populations can be studied in the field. These properties allow controlled experiments to be performed on problems of direct relevance to natural aphid populations. Combined …

Assembly Of The Eastern North American Herpetofauna: New Evidence From Lizards And Frogs, J. Robert Macy, James A. Schulte Ii, Jared L. Strasburg, Jennifer A. Brisson, Allan Larson, Natalia B. Ananjeva, Yuezhao Wang, James F. Parham, Theodore J. Papenfuss

School of Biological Sciences: Faculty Publications

Darwin first recognized the importance of episodic intercontinental dispersal in the establishment of worldwide biotic diversity. Faunal exchange across the Bering Land Bridge is a major example of such dispersal. Here, we demonstrate with mitochondrial DNA evidence that three independent dispersal events from Asia to North America are the source for almost all lizard taxa found in continental eastern North America. Two other dispersal events across Beringia account for observed diversity among North American ranid frogs, one of the most species-rich groups of frogs in eastern North America. The contribution of faunal elements from Asia via dispersal across Beringia is …

The Developmental And Molecular Basis Of Allometry In Drosophila, Alexander W. Shingleton, Jennifer A. Brisson, David L. Stern

School of Biological Sciences: Faculty Publications

Allometry is the scaling relationship between the size of an organism and the size of its constituent parts. Despite its obvious developmental and evolutionary importance, very little is known of the mechanisms that regulate allometries. Here, we look at one particular type of allometry—that created by rearing Drosophila under different nutritional conditions. Drosophila larvae that are fed increasingly suboptimal diets eclose into increasingly small adults with increasingly small body parts. Surprisingly, however, the male genitals remain approximately the same size under a range of nutritional conditions. The genitals therefore maintain a different allometric relationship with the body than other structures. …