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Establishment Of A Melanoma Esc-Gemm Platform And Its Use To Study Pten Tumor Suppressor Functions, Ilah Bok

USF Tampa Graduate Theses and Dissertations

The cumbersome and time-consuming process of generating new mouse strains and multiallelic experimental animals often hinders the use of genetically engineered mouse models (GEMM) in cancer research. In chapter 2, we describe the development and validation of an embryonic stem cell (ESC)-GEMM platform for rapid modeling of melanoma in mice. The platform incorporates 12 clinically relevant genotypes composed of combinations of four driver alleles (LSL-BrafV600E, LSL-NrasQ61R, PtenFlox, and Cdkn2aFlox) and regulatory alleles to spatiotemporally control the perturbation of genes of interest. The ESCs produce high-contribution chimeras, which recapitulate the melanoma phenotypes of conventionally bred mice. Using the ESC-GEMM platform to …

Defining And Modeling Pericyte-Induced Capillary Network Assembly, Capillary Regression Preceding Pericyte-Stimulated Fibrosis, And Lymphatic Capillary Regression, Scott Stephen Kemp

USF Tampa Graduate Theses and Dissertations

Capillary formation and maturation can only occur through a series of highly orchestrated events that requires the coordinated efforts of both endothelial cells (ECs) and pericytes. While ECs are perfectly capable of creating tube networks on their own, the maturation and stabilization of these tube networks require the presence of a second cell type, pericytes, to create stable capillary networks. Previous studies have identified factors required for pericyte recruitment to EC tube networks, however, we hypothesized that there were still unaccounted for EC-derived molecules that were contributing to pericyte recruitment. In the first part of this study, we used serum-free, …

Targeting The Side-Chain Convergence Of Α-Helical Hot Spots To Design Small-Molecule Mimetics Disrupting Protein-Protein Interaction, Zhen Wang

USF Tampa Graduate Theses and Dissertations

α-Helix accounts for the largest class of protein secondary structures and plays a key role in mediating protein-protein interactions (PPIs). Small-molecule α-helix mimetics mimic the structural features of α-helical hot spots and offer a powerful tool to unravel complex signaling networks and mitigate aberrant PPIs. In this dissertation, the side-chain conformational convergence of α-helical hot spots was disclosed, and insights into the side-chain convergence were exploited to instruct the design of small-molecule α-helix mimetics. The first chapter of this dissertation provides an overview of the characteristics of α-helical hot spots and current strategies to design small-molecule α-helix mimetics. In chapter …

Improving Robustness Of Deep Learning Models And Privacy-Preserving Image Denoising, Hadi Zanddizari

USF Tampa Graduate Theses and Dissertations

Applications of deep learning models and convolutional neural networks have been rapidly increased. Although state-of-the-art CNNs provide high accuracy in many applications, recent investigations show that such networks are highly vulnerable to adversarial attacks. The black-box adversarial attack is one type of attack that the attacker does not have any knowledge about the model or the training dataset, but it has some input data set and theirlabels.

In this chapter, we propose a novel approach to generate a black-box attack in a sparse domain, whereas the most critical information of an image can be observed. Our investigation shows that large …

Development Of Enhanced Algae Strains And Sustainable Cultivation Processes For Production Of Algal Lipids For Biofuels And Bioproducts, Enlin Lo

USF Tampa Graduate Theses and Dissertations

The establishment of an algae industry is crucial for addressing global biofuel and bioproduct demand that meets the Sustainable Development Goals (SDG) worldwide. Photosynthetic microalgae are excellent sources for food, fiber, fuel, feed, and fertilizer, which are the 5Fs of the SDG. However, at present, algae-based materials are not cost-competitive or sufficiently sustainable. Improved productivity, lower cultivation cost, and reduced use of resources are required to transition from lab to industry, necessitating the development of superior strains that have high productivity and can tolerate environmental stress, such as temperature and salinity, so they can be cultivated at large scale outdoors …

Exploring The Structure And Activity Of Metallo-Tetracyclines, Shahedul Islam

USF Tampa Graduate Theses and Dissertations

Copper as a key component of electron transport chain of eukaryotes is an essential transition metal ion. Copper homeostasis in mammals complex and tightly regulated. Its strong reactivity together with binding with biologically important chemicals can have important repercussions in human health and overall environment. Tetracycline as one of most abundantly used antibiotic of the world has become abundant in the environment as well. Herein in this dissertation we take the journey to explore the complexation of tetracycline with metals in the environment and the intricate interaction between copper and tetracycline by investigating their oxidative behavior once they are complexed. …

Individual Differences In Response To Hostile And Benevolent Sexism In A Stem Interview Context: The Moderating Role Of Behavioral Activation, Elizabeth Kiebel

USF Tampa Graduate Theses and Dissertations

Women continue to face sexism in workplace contexts, especially those that are male dominated, such as science, technology, engineering, and mathematics (STEM). Yet, women often fail to confront the sexism they experience, despite confrontation being an effective way to cope with and prevent future harassment (Fitzgerald et al., 1995; Magley, 2002). To date, no one has assessed the potential moderating role of personality differences related to approach motivation on women’s confrontation of sexism. In this study, women were exposed to either a hostilely sexist or benevolently sexist question during a mock job interview that was purportedly being conducted as part …

Small Heat Shock Protein 22 Preserves Neuronal Function In A Murine Model Of Tauopathy, Santiago Rodriguez Ospina

USF Tampa Graduate Theses and Dissertations

Proteinopathies is a family of diseases associated with the pathological aggregation of protein. There are a multitude of proteinopathies, like tauopathy and synucleinopathy that contribute to neurodegenerative diseases like Alzheimer’s disease (AD), Creutzfeldt-Jakob, Pick’s disease, Frontotemporal dementia, and Parkinson’s disease (PD). Currently, one focus of research in the field is mitigating aggregation-prone proteins contributing to disease state. One method of targeting aggregation is the use of chaperones. Chaperones are molecular machinery that help maintain homeostasis in the cells, through various roles and mechanisms, one of those methods is to regulate protein aggregation. Chaperones can achieve this by affecting protein-protein interactions, …

Application Of The Riemann-Hilbert Method To Soliton Solutions Of A Nonlocal Reverse-Spacetime Sasa-Satsuma Equation And A Higher-Order Reverse-Time Nls-Type Equation, Ahmed Ahmed

USF Tampa Graduate Theses and Dissertations

For many years, the study of integrable systems has been one of the most fascinating branches of mathematics and has been thought to be an interesting area for both mathematicians and physicists alike.Many natural phenomena can be predicted by using integrable systems, particularly by studying their different solutions, as well as analyzing and exploring their properties and structures. They are commonly found in nonlinear optics, plasmas, ocean and water waves, gravitational fields, and fluid dynamics. Typical examples of integrable systems include the Korteweg-de Vries (KdV) equation, the nonlinear Schrödinger (NLS) equation, and the Kadomtsev-Petviashvili (KP) equation. Solitons are intrinsic solutions …

Defining The Role Of Oxidized Mitochondrial Dna In Myelodysplastic Syndromes, Grace Anne Ward

USF Tampa Graduate Theses and Dissertations

Myelodysplastic Syndromes (MDS) are heterogeneous bone marrow (BM) failure malignancies characterized by constitutive innate immune activation, NLRP3 inflammasome (IFM) driven pyroptotic cell death, and the induction of interferon-stimulated genes (ISG). MDS often diagnostically resembles other hematologic disorders, as such, additional tools are needed for the discrimination from overlapping disorders. We observed that oxidized mitochondrial DNA (ox-mtDNA) is released upon cytolysis. We hypothesize that levels of ox-mtDNA are high in MDS, allowing us to use it as a diagnostic biomarker; and that cell free ox-mtDNA is contributing to feedforward BM failure.

ROC/AUC analysis demonstrated that ox-mtDNA is a sensitive and specific …

Study On New Reactivity Of Vinyl Gold And Its Sequential Transformations, Teng Yuan

USF Tampa Graduate Theses and Dissertations

This dissertation mainly contains three parts: 1) the study of new reactivity of vinyl gold(I) and synergistic gold-iron catalyzed regioselective crossed aldol reaction. 2) synergistic gold-iron catalyzed amide crossed aldol reaction by using ynamides as ‘masked’ amides. 3) alkyne trifunctionalization via divergent gold catalysis: combining three modes of gold catalysis: π activation, nucleophilic addition of vinyl gold and gold redox catalysis. This novel method affords access to constructing C-N, C-O and C-C bond in one step at mild condition.

In the first part, a new reaction mode in gold catalysis will be introduced. Due to the protodeauration of vinyl gold …

Geothermal Development In Kenya: Gender Based Socio-Cultural And Socio-Economic Implications, Faye N. Ricker

USF Tampa Graduate Theses and Dissertations

This dissertation is an ethnographic case study that analyzes the gendered socio-cultural and socio-economic implications for a community that was displaced in order to develop a geothermal energy system in Kenya. The implications are rendered particularly interesting because the displaced community is also one of the communities served by the geothermal power grid. The analysis employs a composite framework of Feminist Political Ecology and the Political Ecology of Climate Change Mitigation. This work explores gendered perceptions and control of energy, livelihood activities, place attachment, and the cultural/spiritual significance of geothermal energy.

Geothermal energy is a potentially promising source of low-carbon …

A Statistical Method For Quantifying Animal Interaction; Combining Time Geography And Simulation, Zachary J. Smith

USF Tampa Graduate Theses and Dissertations

Dynamic interaction (DI) describes the synchronous interaction of one or more individual animals over time. Current methods to quantify DI from tracking data are lacking. They typically require synchronized tracking data which limits their applicability to most studies. They also often do not have built-in tests of significance to evaluate interaction, and if so, rely on random walk models that lack biological realism. This research aimed to develop and evaluate a new way of measuring animal interaction that overcomes these limitations. The goal was to create a statistical method for quantifying and evaluating interaction that is relevant across computational, behavioural, …

Phenotypic Variability In Ipsc-Induced Cardiomyocytes And Cardiac Fibroblasts Carrying Diverse Lmna Mutations, Jiajia Yang

USF Tampa Graduate Theses and Dissertations

Mutations in the LMNA gene (encoding lamin A/C) are the second most common cause of familial arrhythmogenic cardiomyopathy. Diverse LMNA variants in cardiomyocytes have been associated with cardiac phenotypes. Moreover, cardiac fibroblasts make up a large fraction of the myocardium's non-myocyte component, intrinsically linked to extracellular matrix synthesis and turnover as well as secreting large amounts of bioactive metabolites. However, our understanding of how different mutation sites and the non-myocyte niche mediate cardiomyocyte function is limited. To fill this gap, in this thesis I investigated the hypothesis that variable LMNA mutations have significant effects on the genetic, structure and electrophysiological …

Exploring Magneto-Excitons In Bulk And Mono-Layer Semiconductors Using Non-Linear Spectroscopy Techniques, Varun Mapara

USF Tampa Graduate Theses and Dissertations

The research in two-dimensional (2D) materials has evolved from ``traditional" quantum wells based on group III-V and II-VI semiconductors to atomically thin sheets of van der Waals materials such as 2D semiconducting Transition Metal Dichalcogenides (TMDs). These 2D materials remain a stimulating field that continues to introduce new challenges. From both a fundamental physics and technological perspective, magneto-optical spectroscopy has been an essential tool in this research field. TMDs, for example, pose the challenge of characterizing their spin-valley-resolved physics and deriving implications in quantum computation and information research. With the discovery of valley Zeeman effects, the spin-valley physics of TMDs …

The Role Of Eicosanoid Metabolism In Mammalian Wound Healing And Inflammation, Kenneth D. Maus

USF Tampa Graduate Theses and Dissertations

Inflammatory wounds, both chronic and acute, lead to increased morbidity and mortality rates, especially in the elderly population. The annual healthcare cost for chronic wound care alone is over $39B in the US and the demographic of susceptible patients is steadily increasing due to an aging population and lifestyle-related diseases (e.g., hyperlipidemia, obesity, and type 2 diabetes). In fact, many chronic wounds currently have a worse 5-year outlook than certain types of cancers. This shows the need for expediting the wound healing process in such a way that compresses inflammatory signaling and encourages wound resolution without sacrificing pathogen removal and …

An Internet Of Medical Things (Iomt) Approach For Remote Assessment Of Head And Neck Cancer Patients, Ruchitha Chinthala

USF Tampa Graduate Theses and Dissertations

Internet-of-Medical-Things (IoMT) allows for a smart healthcare system to remotely monitor and assess patient’s progress at home. Head and neck cancers (HNC) are treated with various treatment options which are associated with significant side effects, mainly shoulder dysfunction, and trismus (spasm of jaw muscles). However, measurement of patient’s progress, and side effects while undergoing treatment, is limited to evaluation received based on scheduled appointments. Development of strategies to enhance monitoring during follow-up period is needed for earlier identification of problems such as trismus and shoulder dysfunction. In this interdisciplinary research, for the first time, we develop an IoMT enabling application, …

Formation Of Trihalomethanes During Chlorination At South Cross Bayou Advanced Water Reclamation Facility, Pinellas County, Florida, Ian Grabo

USF Tampa Graduate Theses and Dissertations

South Cross Bayou Advanced Water Reclamation Facility (SCB) in Pinellas County, Florida, recently had a spike in effluent concentrations of bromodichloromethane (BDCM) and dibromochloromethane (DBCM) above the regulated limits, due to relying fully on chlorination instead of a combination of chlorination and ultraviolet light. The objective of this study was to determine the operating parameters most strongly affecting the formation of THMs. This was completed by analysis of long-term data sets obtained from SCB by multiple linear regression to create models describing THM formation. In addition, sampling of the chlorine contact chamber (CCC) was done to determine the effects of …

Oyster Reef-To-Mangrove Regime Shifts Along The West Coast Of Florida, Stephen Gregory Hesterberg

USF Tampa Graduate Theses and Dissertations

Ecological regime shifts are transitions in ecosystem state, which can occur either when external conditions gradually change or when large perturbations force a system into an alternative state. Such transitions can exhibit non-linear dynamics, where small changes in external conditions can result in abrupt transition and often occur with little warning. After crossing a tipping point, the system may be unable to revert to its original state if the new regime possesses strong, reinforcing feedbacks. Numerous marine ecosystems have experienced regime shifts due to a combination of stressors that have eroded ecological resilience, such as overfishing, nutrient loading, and climate …

Watershed Management For Nutrient Control In Taylor Creek And Nubbins Slough, Florida, Rachael Z. Cooper

USF Tampa Graduate Theses and Dissertations

Despite efforts to improve water quality within the watershed since the 1970s, harmful algal blooms (HABs) still occur within Lake Okeechobee (LO). HABs are harmful to the people, the ecosystem, and the economy dependent on the lake. Taylor Creek Nubbins Slough (TCNS) is a subwatershed of the lake, contributing to a large percentage of the nutrient loading. Due to the size and complexity of LO’s watershed, two smaller basins within the TCNS subwatershed were selected to evaluate the following research questions: (1) How do water quality trends contrast between two basins? (2) How do nutrient load and treatment within the …

Carbon Diversion, Partial Nitritation/Anammox Enrichment, And Ammonium Capture As Initial Stages For Mainstream Ion Exchange-Deammonification Process, Sheyla Chero-Osorio

USF Tampa Graduate Theses and Dissertations

Eutrophication is a concerning environmental problem worldwide that results in algae blooms, oxygen depletion, damages to aquatic life and public health, water quality issues, and loss of aesthetics in water reservoirs. Nutrient (e.g., nitrogen and phosphorus) discharges from wastewater, agricultural, urban, and residential runoff promote eutrophication in receiving water bodies. In terms of nitrogen removal, conventional biological nitrogen removal (BNR) is a common technique used in many wastewater treatment plants (WWTP). However, BNR requires aeration for nitrification and organic carbon input for denitrification. In WWTP, the aeration represents a considerable investment in terms of energy costs. Recent technologies involve applying …

Antimicrobial Activity Of Zinc Oxide Nanoparticles Compared To Silver Nanoparticles Administered Towards Methicillin-Resistant Staphylococcus Aureus Biofilms, Kevin Núño

USF Tampa Graduate Theses and Dissertations

Zinc oxide nanoparticles (ZnO NPs), silver nanoparticles (AgNPs), and chitosan nanoparticles have strong antibacterial activity as a broad-spectrum antibiotic against multi-drug resistant (MDR) bacteria. MDR bacteria have a mechanism that increases antibiotic resistance through biofilm formations. MDR methicillin-resistant Staphylococcus aureus BAA-1720 was chosen for an in vitro assessment to calculate the biofilm reduction rate and the median effective dose (ED50) by performing biofilm quantification. Dynamic light scattering was chosen to determine the physiochemical characteristics of ZnO NPs, silver nanoparticles (AgNPs), and chitosan NPs. Transmission electron microscopy was conducted to verify each treatment’s physiochemical characteristics. Antimicrobial susceptibility testing of broad-spectrum and …

Using Fine-Scale Aquatic Habitat Data To Construct Dreissenid Sdms In The Laurentian Great Lakes, Grace C. Henderson

USF Tampa Graduate Theses and Dissertations

The invasion of the Laurentian Great Lakes by aquatic invasive species (AIS) has been the subject of investigation for decades, due to their dramatic alterations to the ecosystem and high economic costs. Two AIS with the largest impacts are dreissenid zebra and quagga mussels, and though these species have been studied extensively, questions remain about what factors control their distributions, and whether lake warming will alter these distributions. Species distribution models (SDMs) offer a powerful tool to examine the relationship between species presences and environmental variables, which are typically bioclimactic data. The creation of the Aquatic Habitat (AqHab) dataset containing …

Techno-Economic And Sustainability Analysis Of Renewable Natural Gas (Rng) Production, Eesha Bhattacharjee

USF Tampa Graduate Theses and Dissertations

Natural Gas (NG) is one of the major sources of energy currently used in the United States. Its major applications include generating electricity, domestic, and industrial heating purposes and as a transportation fuel. The largest component of NG is methane, and it contains trace amounts of hydrocarbons, some CO2 and water vapor.

Biogas (produced by anaerobic digestion (AD) of biomass) upgraded to have high purity methane (often termed as biomethane or renewable natural gas) can be used as an alternative to NG. The upgrading techniques may include CO2 separation from the biogas stream or via to a methanation facility where …

An Exercise In Exceptions: Personhood, Divergency, And Ableism In The Star Trek Franchise, Jessica A. Blackman

USF Tampa Graduate Theses and Dissertations

In 1987, more than two decades after Star Trek: The Original Series aired on television for the first time, the Enterprise returned to delight audiences with an all-new crew in Star Trek: The Next Generation. With the new generation came new issues and adventures for the crew and the audience to explore, and the popularity of the show lead to the production of three successful spin-offs. These four new shows in the Star Trek franchise dealt with more complex plots and commentaries than the original series before them; three characters in particular – Lt. Commander Data, Dr. Julian Bashir, and …

Predicting Future Well-Being Among United States Youth Who Attempted Suicide And Survived, Bingjie Tong

USF Tampa Graduate Theses and Dissertations

After a non-fatal suicide attempt, survivors commonly endorse the goal of building a life worth living; however, there have been few investigations of good outcomes after non-fatal suicide attempts. Our prior study of a national sample of United States youth found that 7 years after a non-fatal suicide attempt, approximately 13% of adolescents (75 out of 574) achieved a well-being profile at or above the top quartile of non-suicidal peers, a status which we term as good future well-being (FWB). The present investigation focused on potential predictors of FWB, including self-esteem, positive mood, family connectedness, and school belongingness, drawn from …

The Need To Address Religious Diversity At Work: An All-Inclusive Model Of Spirituality At Work, Ivonne Valero Cázares

USF Tampa Graduate Theses and Dissertations

This thesis discusses the importance of embracing religion and spirituality in the workplace as an aspect of workplace diversity. This document aims to help us understand the definition of spirituality at the workplace and its constituents.

We conducted a literature review from predominant scholars about the salience of spirituality and religion at the workplace and its relevance to building meaning, connectedness, and a sense of belonging. We will also review Maslow's theory of Human Needs, his research on human peak-experiences, and its correlation to self-actualization and transcendence.

We will present a new model of Spirituality and Religion at the workplace …

Development Of Membrane Assisted Recovery Of Solids (Mars) Technology For Nutrient Management In Decentralized Wastewater Treatment Systems, Itzé Alejandra Kenney

USF Tampa Graduate Theses and Dissertations

Increasing global populations will result in a rise of eutrophic wastewater and an increased need in food supply. Both problems share a commonality: nutrients. Not all communities are equipped to handle one or both of those challenges, considering that typical solutions require large and energy intensive technologies. Wastewater treatment in most major cities is done through centralized treatment plants, which is not feasible for places with limited resources. Decentralized wastewater treatment systems (DWTS) have been developed as an alternative solution for those communities, but they still struggle to sustainably treat nutrients such as ammonium (NH4) and phosphate (PO4^(3-)). Zeolite has …

Interpreting 9/11: Religious Or Political Event?, Fadime Apaydin

USF Tampa Graduate Theses and Dissertations

Terrorism or violence can be triggered by a variety of circumstances, including the religious, cultural, political, or economic conditions of the social environment, as well as the perpetrator’s personal characteristics. However, studies conducted in the aftermath of 9/11 have largely described the attacks as religious events, arguing that religion inherently causes violence or that religion is the main motivation for violence. The primary argument for the approach adopted by such studies is that secular institutions are inclined to be less violent than religious ones. A second approach, on the other hand, fundamentally opposes the arguments that led to describing the …

Moderators Of Cannibalism Among Herbivorous Insects, Christyn A. Geniesse

USF Tampa Graduate Theses and Dissertations

Cannibalism, or the killing and consumption of individuals of the same species, is historically regarded as uncommon among carnivores, but even more so among herbivorous, plant-eating animals. However, recently there is a rapidly growing literature on herbivorous insects, and here I conducted a systematic review and meta-analysis of these new studies with the goals to synthesize what can moderate or promote cannibalism in this trophic group. After screening 3,791 candidate articles, I identified 50 studies that report manipulative experiments of cannibalism among herbivorous insects and found 20 different moderators—such as presence of predators, herbivore age, starvation status, temperature, and injury. …