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Structural Basis For Ternary Complex Formation Between Tau, Hsp90, And Fkbp51, Alexander Steven Barrett

USF Tampa Graduate Theses and Dissertations

The accumulation of the microtubule associated protein tau has been implicated in several neurological disorders; however, its interaction with chaperones along its normal degradation pathway remains largely uncharacterized at single residue resolution. In this study, nuclear magnetic resonance (NMR) spectroscopy was used to probe the interaction between tau, the molecular chaperone Hsp90, and the immunophilin FKBP51. Resonance intensity changes were observed for specific residues in the heteronuclear single quantum coherence (HSQC) spectra of 15N-labeled tau in the presence of Hsp90 and/or FKBP51. Analysis of the HSQC spectra identified the two hydrophobic hexapeptide motifs located at residues V275 - K280 and …

Environmental Effects On The Biomechanics And Motor Physiology Of Elastically Powered Movements In Chameleons, Christopher Van Anderson

USF Tampa Graduate Theses and Dissertations

Environmental temperature exhibits profound effects on the activity and ecology of ectotherms through its impact on muscle contractile physiology. While the performance of locomotor behaviors powered by muscle contraction directly decreases by at least 33% over a 10°C drop in body temperature, chameleons are known to feed, presumably with high performance, at body temperatures where sympatric lizard species remain inactive. I propose that ballistic movements that are powered by the recoil of preloaded elastic and collagenous tissues are less thermally dependent than movements that rely on direct muscular power. Despite the reduced thermal sensitivity of the elastic-recoil powered movement, I …

Evaluation Of A Pilot Land-Based Marine Integrated Aquaculture System, Suzanne Boxman

USF Tampa Graduate Theses and Dissertations

Recirculating aquaculture systems (RAS) produce aquaculture products on land with minimal discharge of waste products and minimal water loss. High costs associated with waste treatment for RAS have triggered the growth of integrated aquaculture systems (IAS) which incorporate macrophytes (aquatic plants) into the treatment train. The objective of this research was to examine a pilot scale inland marine IAS with three different methods for solids treatment: a sand filter followed by a plant bed, only a plant bed, and geotextile bags. Florida Pompano (Trachinotus carolinus) were grown along with Smooth Cordgrass (Spartina alterniflora), Black Needle Rush …

Partial Characterization Of Pf13_0027: A Putative Phosphatase Of Plasmodium Falciparum, Christopher Campbell

USF Tampa Graduate Theses and Dissertations

Signal transduction and stage-specific gene expression are essential components of Plasmodium falciparum development. In this study, the putative phosphatase PF13_0027 is investigated as a critical component of intraerythrocytic development contributing to maturation of the late trophozoite. This putative phosphatase was identified during the course of a large-scale insertional mutagenesis project by insertion of the piggyBac (pB) element, containing a human dihydrofolate reductase (hDHFR) drug selection cassette into the open reading frame (ORF) preventing expression and attenuating parasite development. PF13_0027 codes for a protein with a rhodanese (RHD) and dual specificity phosphatase (DUSP) in a tandem arrangement typically identified with mitogen-activated …

"They Come, But They Don't Spend As Much Money": Livelihoods, Dietary Diversity, Food Security, And Nutritional Status In Two Roatan Communities In The Wake Of Global Crises In Food Prices And Finance, Racine Marcus Brown

USF Tampa Graduate Theses and Dissertations

ABSTRACT

This dissertation explores the associations between recent global crises in staple food prices and finance and the following aspects of life in two communities on the island of Roatàn, Islas de La Bahia (Bay Islands), Honduras: household livelihoods; food commoditization; dietary diversity; food security; and nutritional status. The aims of this study are: ) assess the geographic and economic source(s) of foods consumed by two different communities on Roatàn; b) discover how the most recent economic and food crises have affected foodways and nutrition on Roatàn; c) assess how these crises have affected economic growth of the tourism sector …

The Role Of Molecular Chaperones In The Etiology And Treatment Of Psychiatric Diseases In The Elderly, John Clarence O'Leary

USF Tampa Graduate Theses and Dissertations

The elderly are at increased risk for developing psychiatric diseases, which include Alzheimer's disease, depression, anxiety and suicide. The probability of multiple disease comorbidity is also increased in the elderly. At the cellular level, the loss of protein homeostasis is often at the root of disease emergence, and thus the scientific community is searching for ways to help maintain this balance. A vast group of proteins that are paramount to balancing and counterbalancing protein levels is the molecular chaperone protein group, which has evolved a tremendous variety of functions in the cell. They aid in protein trafficking, folding, receptor signaling, …

The Elimination Of Blindness: An Ethnographic Exploration Of The Fight Against Trachoma In Niger, Kelley Cosby Sams

USF Tampa Graduate Theses and Dissertations

The goal of this study is to explore specialized and popular cultural models of trachoma, and the interaction between the trachoma elimination program and its target audience in one trachoma hyper-endemic intervention community. Eighty four million people worldwide, mainly children, are infected with active bacterial trachoma. For some, this will lead to painful and progressive corneal opacity and eventual blindness. The disease is most commonly spread by person-to-person contact or by flies, and affects very specific populations living in resource-poor areas such as rural Niger, which has one of the highest prevalence rates worldwide.

The World Health Organization formed an …

The Effect Of Rate Change On The Relative Timing Of Speakers With Multiple Sclerosis, Brandlynn N. Reister

USF Tampa Graduate Theses and Dissertations

Relative timing ratios are a useful measure for determining the temporal regularities of speech. The timing intervals that make up these ratios are thought to be important when creating the motor plan for an utterance (Weismer & Fennell, 1985). In fact, these ratios have been shown to be remarkably stable, even when speakers deliberately increase their rate (Tuller & Kelso, 1984; Weismer & Fennell, 1985). The constancy of these ratios also has been demonstrated in speakers with known speech timing disturbances, like the dysarthrias associated with Parkinson's and Huntington's disease (Goberman & McMillan; Ludlow, Connor, & Bassich, 1987; Weismer & …

Beyond The Door: Disability And The Sibling Experience, Morgan Violeta Sanchez Taylor

USF Tampa Graduate Theses and Dissertations

This thesis explores the experiences of adult siblings of individuals with impairments. It expands on the existing literature by exploring the complexity of the sibling experience of disability while moving beyond the concepts of burden and maladjustment that have characterized much of the previous literature. In addition, it expands upon and extends to the sibling experience an emerging view of disability by examining the ways in which themes identified in sibling narratives cross lines between the Medical and Social Models of Disability. Building on work by Mark Priestly and Tom Shakespeare, I call this emerging view the Interactional Model of …

Negotiating Race-Related Tensions: How White Educational Leaders Recognize, Confront, And Dialogue About Race And Racism, Amy Jo Samuels

USF Tampa Graduate Theses and Dissertations

Despite exposure of educational disparities for students of color, as well as the notion that educational training rarely discusses race and racism, there continues to be a lack of discourse on race, racism, and anti-racism in educational leadership. Subsequently, it is important to challenge deficit thinking and encourage further examination of the deeply-rooted foundation of oppression. The study explored personal narratives of white educational leaders who oppose racial inequity to heighten awareness about conceptualizations of race, racism, and anti-racism. The research involved interviewing educational leaders in three groups: 1) aspiring, 2) currently-practicing, and 3) recently-retired. Eight participants were selected to …

Mass Spectrometry-Based Methods For The Detection And Characterization Of Protein-Tyrosine Nitration, Kent W. Seeley

USF Tampa Graduate Theses and Dissertations

Protein tyrosine nitration (PTN) is a posttranslational modification resulting from oxidative/nitrosative stress that has been implicated in a wide variety of disease states. Characterization of PTN is challenging due to several factors including its low abundance in a given proteome, preferential site modification, multiple target site proximity within unique peptide sequences, and analytical method and instrument limitations. Current analytical techniques are insufficiently sensitive to identify endogenous nitration sites without incorporation of either nitrotyrosine or target protein enrichment. However, enrichment proficiency can also be inadequate. Chemical derivatization of the nitro- moiety can be incomplete or result in undesirable byproduct formation, while …

The Inflammatory Response Initiated By The Spleen To Ischemic Stroke, Hilary Seifert

USF Tampa Graduate Theses and Dissertations

The peripheral immune system plays a role in delayed neural injury after stroke. This response originates from the spleen as splenectomy prior to middle cerebral artery occlusion (MCAO) in rats significantly reduces infarct volume in the brain. This research is based on the hypothesis that inhibiting the splenic response will reduce neurodegeneration after stroke. Studies in animals have implicated lymphocytes as the immune cell type that is detrimental following MCAO. Interferon gamma (IFNγ) has been identified as a pro-inflammatory cytokine that is also detrimental following stroke. IFNγ is important because it activates microglia and macrophages in a pro-inflammatory nature that …

Harmful Algal Blooms Of The West Florida Shelf And Campeche Bank: Visualization And Quantification Using Remote Sensing Methods, Inia Mariel Soto Ramos

USF Tampa Graduate Theses and Dissertations

Harmful Algal Blooms (HABs) in the Gulf of Mexico (GOM) are natural phenomena that can have negative impacts on marine ecosystems on which human health and the economy of some Gulf States depends. Many of the HABs in the GOM are dominated by the toxic dinoflagellate Karenia brevis. Non-toxic phytoplankton taxa such as Scrippsiella sp. also form intense blooms off the Mexican coast that result in massive fish mortality and economic losses, particularly as they may lead to anoxia.

The main objectives of this dissertation were to (1) evaluate and improve the techniques developed for detection of Karenia spp. blooms …

Optimization In Non-Parametric Survival Analysis And Climate Change Modeling, Iuliana Teodorescu

USF Tampa Graduate Theses and Dissertations

Many of the open problems of current interest in probability and statistics involve complicated data

sets that do not satisfy the strong assumptions of being independent and identically distributed. Often,

the samples are known only empirically, and making assumptions about underlying parametric

distributions is not warranted by the insufficient information available. Under such circumstances,

the usual Fisher or parametric Bayes approaches cannot be used to model the data or make predictions.

However, this situation is quite often encountered in some of the main challenges facing statistical,

data-driven studies of climate change, clinical studies, or financial markets, to name a few. …

Anti-Parasitic And Anti-Bacterial Agents: Studies On 1,4-Dihydropyridines And 2,4-Diaminoquinazolines, Kurt Steven Van Horn

USF Tampa Graduate Theses and Dissertations

Thirty-three 1,4-dihydropyridine diastereomeric pairs were synthesized and the structure-activity relationship studied in a Plasmodium falciparum in vitro model. Twenty-nine of these derivatives contained a 6-position oxygen, with 2.31, 2.32, 2.52 and 2.53 having single and double digit nanomolar activities. This SAR study revealed some insightful information about the 1,4-dihydropyridine substitution pattern. Substitution at the 7-position other than 3,4-dimethoxy severely reduced the activity. 4-phenyl substitution with 2- or 4- halo or methyl formed active compounds while substitution at the 3-position or with methoxy or conjugated aryl systems resulted in inactive compounds. The 2-position was found to majorly affect the activity, with …

Phosphorylation Of Histone Deacetylase 6 Within Its C-Terminal Region By Extracellular Signal Regulated Kinase 1, Kendra Allana Williams

USF Tampa Graduate Theses and Dissertations

http://upload.etdadmin.com/etdadmin/pdfout/222759_supp_undefined_2A63E500-E9D7-11E2-925E-BE522E1BA5B1.PDF

Agricultural And Domestic Waste Contamination In Chilibre Panama And Potential Low-Cost Best Managament Practices, Christopher Etienne Weekes

USF Tampa Graduate Theses and Dissertations

Abstract

Sanitation coverage in the Republic of Panama is 5 to 10 percent below the Millennium Development Goals targets set for the country. Population growth, urbanization, unplanned development and waste mismanagement have resulted in improvised trash sites and waste discharges into river systems that are important components of the biologically diverse natural environment of Panama. The study sought to investigate and estimate the burden of waste from domestic and agricultural sources in three regions of the Chilibre corrigimiento (district). It was hypothesized that the water quality and land cover data would reflect that the most populated region in the study …

The Post- 9/11 Aesthetic: Repositioning The Zombie Film In The Horror Genre, Alan Edward Green, Jr.

USF Tampa Graduate Theses and Dissertations

This dissertation explores a body of films produced after the events of 9/11, and while examining this specific point of departure, the author presents the argument on the vast cultural relevancy of the omnipresent zombie. These films are interrogative and complex, offering the viewing audience a rich tapestry of interwoven meanings. Furthermore, the author suggests that the zombie trope has, in fact, left the genre altogether, reinserted into a style of films he labels as "non-zombie appropriation." Chapter 1 introduces the zombie genre as both part of the larger horror genre aesthetic and as its' own legitimate subgenre. The zombie …

Statistical Analysis And Modeling Of Prostate Cancer, Yiu Ming Chan

USF Tampa Graduate Theses and Dissertations

The objective of the present study is to address some important questions related to prostate cancer treatments and survivorship among White and African American men. It is commonly understood that the risk of developing prostate cancer is higher in African American men than the other races. However, using parametric analysis, this study demonstrates that this perception is a "myth" not a "reality". The study further identifies the existence of racial/ethnic disparities by comparing the average mean tumor size, the median of survival time, and the survival function between White and African American men. These results underline the necessity of understanding …

The Assessment Of An In-Vitro Model For Evaluating The Role Of Parp In Ethanol-Mediated Hepatotoxicity, Jayme Coyle

USF Tampa Graduate Theses and Dissertations

This investigation assesses the role of poly(ADP-ribose) polymerase in ethanol-mediated hepatotoxicity using the untransfected HepG2 hepatocellular carcinoma line, an established, well-characterized toxicological model. HepG2 cells were treated with ethanol at concentrations between 100 mM and 800 mM, and assessed for markers of cytotoxicity. PARP-1 activity in total cell protein lysates was quantified as a proxy of apoptotic induction at six hours. Our results demonstrated a 1.43-fold AST activity increase in culture medium isolates of cells exposed to 800 mM without significant effect on cellular viability. PARP-1 activity varied greatly and results for enzyme activity remained inconclusive. The results suggest a …

Biomechanical Comparison Of Titanium And Cobalt Chromium Pedicle Screw Rods In An Unstable Cadaveric Lumbar Spine, James Doulgeris

USF Tampa Graduate Theses and Dissertations

Pedicle screw-rod instrumentation is considered a standard treatment for spinal instability, and titanium is the most common material for this application. Cobalt-chromium has several advantages over titanium and is generating interest in orthopedic practice. The aim of this study was to compare titanium versus cobalt-chromium rods in posterior fusion, with and without transverse connectors, through in vitro biomechanical testing and determine the optimal configuration.

Six cadaveric lumbar spines (L1-S1) were used. Posterior and middle column injuries were simulated at L3-L5 and different pedicle screw constructs were implanted. Specimens were subjected to flexibility tests and range of motion, intradiscal pressure and …

Cd44 Containing Complexes As A Therapeutic Target In Multiple Myeloma, Anthony Gebhard

USF Tampa Graduate Theses and Dissertations

Our laboratory recently reported that treatment with the d-amino acid containing peptide HYD1 induces necrotic cell death in multiple myeloma (MM) cell lines. Due to the intriguing biological activity and promising in vivo activity of HYD1, we pursued strategies for increasing the therapeutic efficacy of the parent linear peptide. These efforts led to the development of a cyclized peptidomimetic, MTI-101, with increased in vitro activity and robust in vivo activity as a single agent using two myeloma models that consider the bone marrow microenvironment. MTI-101 treatment resulted in mechanistically similar hallmarks of HYD1 induced cell death, namely the generation of …

A Three Dimensional Scaffold For Anticancer Drug Development, Yvonne Girard

USF Tampa Graduate Theses and Dissertations

Attrition rates for anticancer drugs are much higher than any other therapeutic area. Only 5%#37; of the agents that demonstrate anticancer activity in the preclinical stages of development demonstrate clinical efficacy in phase III trials. This high attrition rate becomes alarming when we consider that the cost of research and development can amount to 1 billion dollars. To exacerbate this problem, many new cancer drugs are being discontinued, withdrawn or suspended. The reasons for this high attrition rate are complex and may be partly attributed to suboptimal preclinical strategies such as the use of two-dimensional (2D) cell culture systems to …

A Monte Carlo Approach To Change Point Detection In A Liver Transplant, Alexia Melissa Makris

USF Tampa Graduate Theses and Dissertations

Patient survival post liver transplant (LT) is important to both the patient and the center's accreditation, but over the years physicians have noticed that distant patients struggle with post LT care. I hypothesized that patient's distance from the transplant center had a detrimental effect on post LT survival. I suspected Hepatitis C (HCV) and Hepatocellular Carcinoma (HCC) patients would deteriorate due to their recurrent disease and there is a need for close monitoring post LT. From the current literature it was not clear if patients' distance from a transplant center affects outcomes post LT. Firozvi et al. (Firozvi AA, 2008) …

Optimization, Modification And Application Of Gold Nanoparticles As The Substrates Of Surface Enhanced Raman Spectroscopy, Seongmin Hong

USF Tampa Graduate Theses and Dissertations

SERS

Prenatal Stress, Depression, And Herpes Viral Titers, Pao-Chu Hsu

USF Tampa Graduate Theses and Dissertations

Recent studies suggest that some cases of prenatal depression may be associated with reactivation of latent infections of the herpesvirus family. The possible relationships among stress, prenatal depression, and herpes viral reactivation in pregnancy are understudied and the molecular pathways such as the neuroimmune biogenic amine pathway are unidentified. Chronic stress shifts the T helper-1 cell (Th1) cytokine profile to a Th2 profile, which favors virus induced pathogenesis and survival. Pregnancy is also associated with a similar Th2 dominance. In non-pregnant individuals, exposure to psychological or physical stress may be associated with latent herpes viral reactivation and could result in …

Phenotypic Characterization Of The Pancreatic-Derived Factor (Pander) Knockout Mouse On Pure C57bl/6 Background, Shari Moak

USF Tampa Graduate Theses and Dissertations

PANcreatic-DERived Factor (PANDER), or FAM3B, is a 235-amino acid protein strongly expressed within and secreted from the endocrine pancreas. Research surrounding PANDER has revealed a large role for the protein in maintaining glucose homeostasis, as evidenced by several Ad-PANDER overexpressing murine models, our lab's pancreas-specific PANDER transgenic overexpressor, and most recently our mixed genetic C57/129J PANDER knockout (PANKO) mouse. However, PANDER's overall role in glycemic regulation and glucose homeostasis has yet to be studied in a purebred C57BL/6J PANDER knockout model. Here we present the first phenotypic characterization of our global PANDER knockout mouse on a C57BL/6J background (PANKO-C57) where …

Weather Patterns Associated With Green Turtle Hypothermic Stunning Events In St. Joseph Bay And Mosquito Lagoon, Florida, Kelsey Roberts

USF Tampa Graduate Theses and Dissertations

January of 2010 brought record-breaking cold temperatures to Florida. Such freeze events can upset vulnerable populations of marine life and other species that rely on stable water temperatures. Sea turtles are one group of species that are particularly susceptible to abrupt drops in water temperature. When water temperatures drop below 10°C, a mass hypothermic stunning, or cold-stunning, event for sea turtles can be expected, with many debilitated turtles washing onshore with a very limited time window to be rehabilitated (Foley et al. 2007). The species of sea turtle that appears to cold-stun with the most frequency is the green turtle, …

Molecular Technologies In The Science And Policy Of Florida Largemouth Bass Micropterus Floridanus Management In Florida, Josh Sakmar

USF Tampa Graduate Theses and Dissertations

Advances in molecular technologies have provided conservation biologist with the opportunity to quantify the genetic structure of a population and, in turn develop management guidelines and policies aimed at preserving the genetic diversity of fish stocks challenged by human activities. This thesis examines the status of genetics as applied to the management of freshwater fisheries by state natural resource agencies with a purpose of understanding the keys to a successful genetics program. An online survey was used to investigate the breadth of molecular marker application to freshwater fisheries management by state natural resource departments. Seven questions were posed to 50 …

Resistance And Tolerance To Trematode Parasites In Larval Anurans, Brittany Sears

USF Tampa Graduate Theses and Dissertations

Nearly every species on the planet has at least one parasite, which, by definition, incurs a

cost in the host. Therefore, organisms must resist parasites - preventing or reducing infections -

or tolerate parasites - reducing the costs of infection - in order to maintain their fitness despite

the presence of parasites. Here, I investigated: 1) whether parasitic, larval trematodes (cercariae)

can detect the least resistant tadpole host species, 2) a hypothetical framework for how host life

history impacts the utilization of inflammation and thus, resistance and tolerance, 3) whether a

common anesthesia technique used in experimental infections immunocompromises tadpoles, …