Digital Commons Network^™

Wall Shear Stress In Simplified And Scanned Avian Respiratory Airways, Michael Sterling Farnsworth

Theses and Dissertations

Birds uniquely produce sound through a vocal organ known as a syrinx. The presence of wall shear stress acting on the airway cells of any organism will affect how airway cells develop and multiply. Unique features of avian airway geometry and breathing pattern might have contributed to the development of the syrinx. This thesis examines wall shear stress in the trachea and first bronchi of avian geometries using computational fluid dynamics. The computational fluid dynamic simulations underwent grid- and time-independence studies and were validated using particle image velocimetry. Parameters such as bird size, bronchial branching angle, and breathing waveform were …

Villë Luksoze, Eglantina Buja

Theses and Dissertations

“Objekti përceptohet me sytë që shohin, me kokën që lëvizë, dhe me këmbët që ecin...” Ludwing Mies Van Der Rohe

Ndryshimet e vazhdueshme dhe konceptet e ripërtëritura të stilit të jetesës së njerëzve sjellin dhe krijojnë gjithnjë e më tepër nevoja për kualitetet e përgjithshme të banimit. Për më tepër kërkesat për vila dhe rezidenca kanë marshuar drejtë sferës së dimensionit psikologjik dhe kulturor. Si rrjedhojë edhe ka lindur një trend i ri dizajni dhe kërkesa të reja për qasjen ambientale, organizimin e kthinave, përzgjedhjen e materialeve dhe konceptin e dizajnit. Kjo qasje rezulton në krijimin e hapësirave më natyrale …

A Phylogenetic Analysis Of Leptogorgia Virgulata And Leptogorgia Hebes In The Northwestern Gulf Of Mexico, Samantha Silvestri

Theses and Dissertations

The use of genetics in recent years has brought to light the need to reevaluate the classification of many gorgonian octocorals. In 2017, Poliseno et al. conducted a comprehensive, phylogenetic study of the genus Leptogorgia and found that it, too, was in need of taxonomic revision. To expand on their study, 25 samples representing two Leptogorgia species—L virgulata and L. hebes —from the northwestern Gulf of Mexico (GOM) were examined. Ten novel, complete mitochondrial genomes were sequenced using Next Generation sequencing and 24 novel mtMutS sequences were obtained from both species. The phylogenies reconstructed from these sequences indicate the …

Measuring Connective Capacity Throughout The Gulf Of Mexico Fishery Management Network, Anthony Rocha Lima

Theses and Dissertations

The Gulf of Mexico provides substantial resources along its 1,680-mile coastline, spanning 5 U.S. states and providing millions of pounds of seafood and hundreds of millions in revenue annually. Continued success of the fishery relies on the ability of a large, complex, multiagency network to find the best solutions to balance the needs of humans, as well as ensure long-term sustainability. Organizations with varying objectives require effective communication when addressing intricate ecosystem-based management topics such as endangered species and regional economies.

To better understand the connectivity within the Gulf fishery management network, an IRB reviewed survey was dispersed to the …

Effects Of And Influences On Microbial Populations Of Missouri Maize Fields, Madsen Paul Sullivan

Theses and Dissertations

The role of individual soil microorganisms changes over the course of a plant's life - microorganisms that have no discernable role at one developmental stage may affect the plant later in its growth. Traditional analysis of the soil microbiome, which has focused principally on the relative abundances (RA) of individual organisms, may be incomplete, as underlying differences in population size cannot be addressed. We conducted a metagenomic analysis of soil microorganisms from various maize (Zea mays L.) fields at two depths, accompanied by crop yield components, to provide insight into influences of edaphic microbes on maize productivity under commercial maize …

Gut Microbiota Regulates The Interplay Between Diet And Genetics To Influence Insulin Resistance, Jeralyn Jones Franson

Theses and Dissertations

Insulin resistance and obesity are major public health concerns. The impact of diet and genetics on insulin resistance and obesity is well accepted. Additionally, the gut microbiota has been shown to influence obesity and metabolic disorders. However, much remains to be understood about the role of gut microbiota in the development of insulin resistance and obesity. We utilized a mouse model lacking PAS kinase, a protein involved in cellular metabolism, in order to better understand the relationship between diet, genetics and the gut microbiota. Previous research has shown that mice lacking PAS kinase were protected from the effects of a …

Engineering Cell-Free Biosystems For On-Site Production And Rapid Design Of Next-Generation Therapeutics, Kristen Michelle Wilding

Theses and Dissertations

While protein therapeutics are indispensable in the treatment of a variety of diseases, including cancer, rheumatoid arthritis, and diabetes, key limitations including short half-lives, high immunogenicity, protein instability, and centralized production complicate long-term use and on-demand production. Site-specific polymer conjugation provides a method for mitigating these challenges while minimizing negative impacts on protein activity. However, the location-dependent effects of polymer conjugation are not well understood. Cell-free protein synthesis provides direct access to the synthesis environment and rapid synthesis times, enabling rapid evaluation of multiple conjugation sites on a target protein. Here, work is presented towards developing cell-free protein synthesis as …

Microbial And Environmental Drivers Of Soil Respiration Differ Along Montane To Urban Transitions, Kerri Ann Russell

Theses and Dissertations

In natural ecosystems, like deciduous and coniferous forests, soil CO2 flux or soil respiration is highly variable and influenced by multiple factors including temperature, precipitation, dissolved soil organic carbon (DOC), dissolved organic matter (DOM), and bacterial and fungal biomass and diversity. However, as the human population continues to grow rapidly, so too do urbanized landscapes with unknown consequences to soil respiration. To determine the extent urbanization influences seasonal shifts in microorganisms and environmental drivers alter soil respiration, we evaluated bacterial and fungal communities, soil physiochemical characteristics, and respiration in forested and urbanizing ecosystems in three watersheds across northern Utah, USA. …

Repopulation And Stimulation Of Porcine Cardiac Extracellular Matrix To Create Engineered Heart Patches, Silvia Juliana Moncada Diaz

Theses and Dissertations

Heart failure is the main cause of death for both men and women in the United States. The only proven treatment for patients with heart failure is heart transplantation. The goal of this research is to create patches of tissue that could mimic the function of the native heart to repair the damaged portions of the heart. In this study, whole porcine hearts were decellularized to create a 3D construct that was recellularized with cardiomyocytes (CM) differentiated from human induced pluripotent stem (IPS) cells. At day 4 of differentiation, IPS-derived CMs were implanted onto cardiac extracellular matrix (cECM) and ten …

Characterization Of Pyrolysis Products From Fast Pyrolysis Of Live And Dead Vegetation, Mohammad Saeed Safdari

Theses and Dissertations

Wildland fire, which includes both planned (prescribed fire) and unplanned (wildfire) fires, is an important component of many ecosystems. Prescribed burning (controlled burning) is used as an effective tool in managing a variety of ecosystems in the United States to reduce accumulation of hazardous fuels, manage wildlife habitats, mimic natural fire occurrence, manage traditional native foods, and provide other ecological and societal benefits. During wildland fires, both live and dead (biomass) plants undergo a two-step thermal degradation process (pyrolysis and combustion) when exposed to high temperatures. Pyrolysis is the thermal decomposition of organic material, which does not require the presence …

Biogeography And Natural History Of Tiger Moths And Spongillaflies Of Intermountain North America With Experimental Studies Of Host Preference In The Lichen-Feeder Cisthene Angelus (Insecta: Lepdioptera: Erebidae: Arctiinae And Neuroptera: Sisyridae), Makani Layne Fisher

Theses and Dissertations

The Intermountain West is comprised of impressive land formations, numerous ecoregions, and a unique biota. The area has many flora and fauna that have been investigated, but the region is generally considered undersampled when it comes to insects. However, I propose the matter to be a lack of shared experience in identifying key insect species and the underutilization of professional and personal collections. These impediments are highlighted by two insect groups in the Intermountain West: spongillaflies and tiger moths.Spongillaflies can be difficult to recognize for the general entomologist and have rarely been recorded in the Intermountain West. My colleagues and …

The Design, Construction, And Thermal Diffusivity Measurements Of The Fluorescent Scanning Thermal Microscope (Fstm), Samuel Hunter Hayden

Theses and Dissertations

Over the life of nuclear fuel, inhomogeneous structures develop, negatively impacting thermal properties. New fuels are under development, but require more accurate knowledge of how the properties change to model performance and determine safe operational conditions. Measurement systems capable of small–scale, pointwise thermal property measurements and low cost are necessary to measure these properties and integrate into hot cells where electronics are likely to fail during fuel investigation. This project develops a cheaper, smaller, and easily replaceable Fluorescent Scanning Thermal Microscope (FSTM) using the blue laser and focusing circuitry from an Xbox HD-DVD player. The FSTM also incorporates novel fluorescent …

The Antimicrobial Properties Of Honey And Their Effect On Pathogenic Bacteria, Shreena Himanshu Mody

Theses and Dissertations

Honey has been used to heal wounds since ancient times. There are many references in ancient literature that cite honey for its medicinal uses. It is used as an alternative agent to cure infections of wounds, burns, ulcers etc. Researchers have shown some of the antimicrobial properties of honey when used as an ointment. When applied to an affected area, it helps to promote the growth of healthy tissue. One of the factors on which the quality of the honey depends, is its geographical origin. Based on the location, honey types can vary as much as 100-fold from each other …

Toward Real-Time Flip Fluid Simulation Through Machine Learning Approximations, Javid Kennon Pack

Theses and Dissertations

Fluids in computer generated imagery can add an impressive amount of realism to a scene, but are particularly time-consuming to simulate. In an attempt to run fluid simulations in real-time, recent efforts have attempted to simulate fluids by using machine learning techniques to approximate the movement of fluids. We explore utilizing machine learning to simulate fluids while also integrating the Fluid-Implicit-Particle (FLIP) simulation method into machine learning fluid simulation approaches.

Innate Immune Cell Phenotypes Are Dictated By Distinct Epigenetic Reprogramming, Kevin Douglas Adams

Theses and Dissertations

The innate immune system is the first line of host defense against external exposures. During these initial encounters, antigen presenting cells - specifically monocytes and macrophages - modulate further inflammatory responses. Macrophages exist along a spectrum of phenotypic programs; on the inflammatory M1 end they enhance immune activity while on the anti-inflammatory M2 end they suppress further immune activation. Furthermore, within M2 macrophages there exist many subpopulations, namely M2a and M2d, each with specific roles during infection or exposure. We sought to compare the epigenetic profiles of these subpopulations of macrophages to determine key regulatory gene networks and factors that …

Pore Pressure Generation And Shear Modulus Degradation During Laminar Shear Box Testing With Prefabricated Vertical Drains, Landon Scott Kinney

Theses and Dissertations

Liquefaction is a costly phenomenon where soil shear modulus degrades as the generation of excess pore pressures begins. One of the methods to mitigate liquefaction, is the use of prefabricated vertical drains. Prefabricated vertical drains provide a drainage path to effectively mitigate the generation of pore pressures and aid in shear modulus recovery. The aims of this study were to define shear modulus degradation vs. shear strain as a function of excess pore pressure ratio; define the effects of prefabricated vertical drains on the behavior of pore pressure generation vs. shear strain; and to define volumetric strain as a function …

Bobcat Abundance And Habitat Selection On The Utah Test And Training Range, Kyle David Muncey

Theses and Dissertations

Remote cameras have become a popular tool for monitoring wildlife. We used remote cameras to estimate bobcat (Lynx rufus) population abundance on the Utah Test and Training Range during two sample periods between 2015 and 2017. We used two statistical methods, closed capture mark-recapture (CMR) and mark-resight Poisson log-normal (PNE), to estimate bobcat abundance within the study area. We used the maximum mean distance moved method (MMDM) to calculate the effective sample area for estimating density. Additionally, we captured bobcats and estimated home range using minimum convex polygon (MCP) and kernel density estimation (KDE) methods. Bobcat abundance on the UTTR …

The Role Of Type 2 Diabetes And Metformin Use In Cognitive Decline, Kelley R. Chilson

Theses and Dissertations

Primary objectives of the present study include exploring the role of both A1C values and the anti-diabetic medication, metformin, on cognitive decline through measured by a brief neuropsychological exam (BNE) and the Montreal Cognitive Assessment (MoCA). Method: Eleven years of archival cognitive testing and medical information from a total of 479 East Central Florida Memory Disorder Clinic patients (52.8 % female, 88.5% Caucasian, Mage = 78.79 years) was utilized for the present study. Participants were placed into two groups: Type 2 diabetes (n = 239) and a control group (n = 240). Cognitive testing data were collected via MoCA screening …

Automatic Anuran Species Recognition Via Vocalization, Katrina Smart

Theses and Dissertations

Species recognition of Anuran vocalization is an important problem in ecology, which is costly and time consuming. Recently, biologists have turned to machine learning techniques to automate the process. An automated process can be made even more helpful if available to use on a smart phone, which can be used in the field by scientists and citizen scientists alike. The problem of automatic frog call recognition is challenging because features need to be chosen that can properly separate different species’ very similar sounding vocalizations. This thesis offers the following contributions: 1. Three novel feature extraction methods, which do not require …

Lighting A Path To Biofouling Prevention: Investigating The Effect Of Ultraviolet Light On Biofouling, Cierra Rose Braga

Theses and Dissertations

Ultraviolet light (UV) is considered an environmentally friendly antifouling method because it disrupts biological growth without the release of harmful toxins. The application of UV for the marine shipping industry is a relatively new concept, and there still remains many unknowns before it can be fully implemented. This research investigated several aspects of applying UVC for the control of fouling. A novel method of using embedded UV LEDs within a silicone coating for fouling control proved to be very effective at preventing fouling. The research also investigated the effect of using an external UVC light treatment to control fouling on …

Local Delivery Of Mesenchymal Stem Cells Expressing Osteogenesis-Inducing Microrna For Bone Tissue Engineering Applications, Marco Antonio Arriaga

Theses and Dissertations

Bone is capable of regenerating autonomously when the injury is small (< 2.5 cm), however, large (> 2.5 cm) or insufficiently vascularized defects require intervention to repair. The overall goal of this project is to contribute towards the development of novel strategies to aid bone tissue regeneration by delivering mesenchymal stem cells expressing microRNAs that induce expression of the runt-related transcription factor 2 (RUNX2). It was determined that porous polycaprolactone (PCL) scaffolds fabricated to have a higher surface area to volume ratio (SVR) (> 80) compared to lower SVR (< 80) were hydrolyzed at a higher rate. Scaffolds fabricated with 80 vol. %/300–500 µm porogen were optimal for cell colonization as higher absorbance of metabolized MTT was detected compared to other scaffold types. From the subset of 5 miRNAs tested, miRNA-26a, miRNA-196 and miRNA-218 demonstrated higher upregulation of RUNX2 gene expression and calcium mineralization and thus, are promising candidates for bone tissue regeneration.

Vocational Rehabilitation Counselors' Experiences, Perceptions, And Readiness Related To Self-Employment Of People With Disabilities, Deborah Ashley

Theses and Dissertations

The purpose of this dissertation study was to explore the experiences, perceptions, and readiness (EPR) of vocational rehabilitation counselors (VRCs) supporting people with disabilities (PWD) in self-employment. While PWD are twice as likely to be self-employed than the general population, self-employment case closure rates within vocational rehabilitation remain historically low around 2%.

Descriptive, inferential, and correlational statistical analysis were used to investigate the EPR of 205 Certified Rehabilitation Counselors across the nation via an online survey, the Vocational Rehabilitation Counselor Self-Employment Process Survey (VRC-SEPS). The VRC-SEPS consists of demographic items, two Likert-type scales examining experiences and readiness, and a set …

Midguts, Microbes, And Mosquitoes: An Analysis Of The Microbiomes Of Aedes Aegypti And Aedes Albopictus, Flor Alicia Martinez

Theses and Dissertations

Experiment 1: Mosquito microbiomes are influenced by the environment and diets of mosquitoes. There is great variability within and among mosquito populations with few microbe inhabitants being well established among mosquitoes of similar species and environments. By understanding the potential variation in midgut microbiomes in lab and wild populations, we may assess the effect that microbiomes have on vector competency.

Experiment 2: Mosquito midgut microbes are essential for development and may influence the vector competency. Native and non-native strains of the midgut inhabitant, Cedecea, were introduced to laboratory colonies of Aedes aegypti and Aedes albopictus mosquitoes to help elucidate …

Improving Thermal-Hydraulic Performance Of Flat-Tube Louver-Fin Heat Exchangers By Eliminating Louver Gap Condensate Bridges, Alan L. Jones

Theses and Dissertations

The air side performance of heat exchangers is a well studied subject. Flat-tube louver-fin heat exchangers experience a decrease in performance when operating in dehumidifying conditions. As water vapor is pulled from the air, water condensate may create blockages between louvers. Flat-tube louver-fin heat exchanger may experience a drop in thermal-hydraulic performance by up to 50% due to blockages. The aim of this study is to make macro scale geometric changes to louver dimensions and eliminate louver condensate bridges. By eliminating louver condensate blockages, the heat exchanger should see an overall gain in thermal performance when compared to current fin …

Cost Of Caring: The Effects Of Euthanasia On Animal Shelter Workers, Kim L. Nguyen-Finn

Theses and Dissertations

This mixed-methods study focuses on animal shelter workers, a population that has often been overlooked in research and clinical practice, and the emotional strains of the task of euthanasia. The effects of employment in a kill or no-kill shelter, participation in euthanasia, and number of years employed on mental health issues of substance abuse, anxiety, depression, secondary traumatic stress, and burnout were examined. A three-way MANOVA was run to test the hypothesis that there is a cell effect among the type of shelter employed in, participation in euthanasia, and years of experience on mental health, which was not supported by …

Impacts Of Habitat Attributes And Community Gardens On Urban Bird Communities, Samuel Glenn Ortiz

Theses and Dissertations

The Rio Grande Valley of Southern Texas is a major agricultural region yet has some of the highest hunger rates in the USA. Urbanization and agriculture affect biodiversity, which is well studied, but little is known about how agriculture affects biodiversity in urban areas. We investigated how different urban attributes, including those related to urban farming, impact bird communities in Brownsville and Harlingen, TX, and compared sites that have community gardens to those that do not. To study three key urban habitat characteristics, we identified sites that exhibited all possible combinations of these factors, quantified land cover classes related to …

Effects Of Invasive Nilgai Antelope (Boselaphus Tragocamelus ) Browsing On Black Mangrove (Avicennia Germinans) In South Texas: A Study On Microenvironmental, Physiological, Structural, And Reproductive Parameters, Tianna Picquet

Theses and Dissertations

Mangroves are important for coastal systems because they provide habitat for fish and bird species, mitigate erosion, and create an area for carbon sequestration. Along the Gulf of Mexico, at the southern tip of Texas, recent observations have shown that A. germinans stands (the dominant species in Texas) are being browsed on by invasive nilgai antelope (Boselaphus tragocamelus). The antelope were introduce to the south Texas region via King Ranch in the 1930’s and have since significantly increased in population and distribution. Previously thought to be grazers, B. tragocamelus were captured on camera utilizing A. germinans as a …

Aligning Anatomical Knee Model With Kinematic Experimental Data To Investigate Squat Exercise, Jose Mario Salinas

Theses and Dissertations

A two-dimensional inverse dynamics anatomical model of the human knee was developed by aligning anatomical structures of the knee (taken from x-rays) with kinematic experimental data (collected from motion capture cameras). The mathematical model was used to study the forces related to the tibiofemoral and patellofemoral joints during the squat and knee extension exercises. Forces calculated by the model included: tibiofemoral contact force, patellofemoral contact force, forces generated by cruciate ligaments, quadriceps force, and patellar tendon force. Bone alignment consisted of superimposing the geometric center of the lateral femoral condyle (from x-rays) with the relative instantaneous center of rotation of …

Graduation As A Function Of Mobility, Attendance, Discipline, Math, English Language Arts/Reading, And Parental Educational Attainment Of The Cohort Group 2015 In One South Texas Urban School District In The Rio Grande Valley, Nancy Lopez Castillo

Theses and Dissertations

This study examined the trends and patterns across time over the cohort 2015 on dependent variable, graduation. Aggregated longitudinal data for independent variables, mobility, attendance, discipline, math achievement, reading achievement, and parental educational attainment was collected for 98 students from 2010 to 2018. The independent variables of mobility, attendance, discipline, math achievement, reading achievement, and parental educational attainment were examined to determine whether or not high school completion is dependent on these measures.

The freshmen cohort 2015 in one south Texas urban school district in the Rio Grande Valley was the focus of the study. Exploratory and confirmatory analysis statistical/data …

Green Synthesis/Biosynthesis Of Silver Nanoparticles By Using Orange Peel Extract, Leela Joshi

Theses and Dissertations

Joshi, Leela, Green Synthesis/Biosynthesis of Silver Nanoparticles by Using Orange Peel Extract. Master of Science (MS), December, 2018, 40 pages, 23 figures, references, 36 titles. In this work, we report synthesis of silver nanoparticles (AgNPs) with an average size of ~6 nm. The aqueous solution of Ag+ ions is reduced using an aqueous extract from orange peel (Citrus Sinensis) at varying pHs. Reduction of Ag+ ions in solution was monitored using UV-visible absorption spectroscopy, and the corresponding surface plasmon resonance of AgNPs at 435 nm. The solution changed color from yellow to reddish-brown upon bioreduction of silver nitrate in orange …