Digital Commons Network^™

Practicing Patienthood Online: Social Media, Chronic Illness, And Lay Expertise, Collette Sosnowy

Publications and Research

The use of digital technologies and social media by people with serious illness to find, share, and create health information is much celebrated but rarely critiqued. Proponents laud “Health 2.0” as transforming health care practice and empowering patients. Critics, however, argue that a discourse of developing lay expertise online masks the disciplinary practices of the neoliberal state’s emphasis on individual responsibility. Notably, the perspectives of people who are engaging with social media related to their health and illness are under-represented in this debate. This research examines the experiences and perspectives of women who blog about their lives with Multiple Sclerosis …

Ecto-Protein Kinases And Phosphatases: An Emerging Field For Translational Medicine, Garif Yalak, Yigal H. Ehrlich, Bjorn R. Olsen

Publications and Research

Progress in translational research has led to effective new treatments of a large number of diseases. Despite this progress, diseases including cancer and cardiovascular disorders still are at the top in death statistics and disorders such as osteoporosis and osteoarthritis represent an increasing disease burden in the aging population. Novel strategies in research are needed more than ever to overcome such diseases. The growing field of extracellular protein phosphorylation provides excellent opportunities to make major discoveries of disease mechanisms that can lead to novel therapies. Reversible phosphorylation/dephosphorylation of sites in the extracellular domains of matrix, cell-surface and trans-membrane proteins is …

Early Back-To-Africa Migration Into The Horn Of Africa, Jason A. Hodgson, Connie J. Mulligan, Ali Al-Meeri, Ryan L. Raaum

Publications and Research

Genetic studies have identified substantial non-African admixture in the Horn of Africa (HOA). In the most recent genomic studies, this non-African ancestry has been attributed to admixture with Middle Eastern populations during the last few thousand years. However, mitochondrial and Y chromosome data are suggestive of earlier episodes of admixture. To investigate this further, we generated new genome-wide SNP data for a Yemeni population sample and merged these new data with published genome-wide genetic data from the HOA and a broad selection of surrounding populations. We used multidimensional scaling and ADMIXTURE methods in an exploratory data analysis to develop hypotheses …

Deriving High-Resolution Protein Backbone Structure Propensities From All Crystal Data Using The Information Maximization Device, Armando D. Solis

Publications and Research

The most informative probability distribution functions (PDFs) describing the Ramachandran phi-psi dihedral angle pair, a fundamental descriptor of backbone conformation of protein molecules, are derived from high-resolution X-ray crystal structures using an information-theoretic approach. The Information Maximization Device (IMD) is established, based on fundamental information-theoretic concepts, and then applied specifically to derive highly resolved phi-psi maps for all 20 single amino acid and all 8000 triplet sequences at an optimal resolution determined by the volume of current data. The paper shows that utilizing the latent information contained in all viable high-resolution crystal structures found in the Protein Data Bank (PDB), …

Emotional Bias Of Cognitive Control In Adults With Childhood Attention-Deficit/Hyperactivity Disorder, Kurt P. Schulz, Anne-Claude V. Bédard, Jin Fan, Suzanne M. Clerkin, Danai Dima, Jeffrey H. Newcorn, Jeffrey M. Halperin

Publications and Research

Affect recognition deficits found in individuals with attention-deficit/hyperactivity disorder (ADHD) across the lifespan may bias the development of cognitive control processes implicated in the pathophysiology of the disorder. This study aimed to determine the mechanism through which facial expressions influence cognitive control in young adults diagnosed with ADHD in childhood. Fourteen probands with childhood ADHD and 14 comparison subjects with no history of ADHD were scanned with functional magnetic resonance imaging while performing a face emotion go/no-go task. Event-related analyses contrasted activation and functional connectivity for cognitive control collapsed over face valence and tested for variations in activation for response …

Risk Factors For Posttraumatic Stress Disorder In Haitian Students, Gretel Silvestre, Pascale Anacréon, Michèle Théodore, Emmanuel Silvestre, Eugenia Garcia-Dubus

Publications and Research

The aim of this study was to assess the prevalence of posttraumatic stress disorder (PTSD) in undergraduate students after the Haiti earthquake on January 12, 2010, as well as to identify the risk factors involved in the development of PTSD symptoms in this sample. Evaluations concerning depression, anxiety, risk and protective factors, and PTSD symptoms were conducted in 246 Haitian undergraduate students enrolled in a Dominican private university. Results indicate a prevalence of 36% for PTSD 2 years after the earthquake, with a high prevalence also of depression (31.7%) and anxiety (21.1%). Some of the risk factors identified are being …

Association Between Symptomatic Vulvovaginal Candidiasis And Hiv Rna Levels In Plasma And Genital Secretions Among Women On Haart, Teke Apalata, William H. Carr, Benjamin Longo-Mbenza, Willem A. Sturm, P. Moodley

Publications and Research

Background. Genital tract (GT) inflammation plays a major role in HIV transmission. We aimed to determine the association between symptomatic vulvovaginal candidiasis (VVC) and HIV RNA levels in plasma and GTs of HIV-infected women on highly active antiretroviral therapy (HAART).

Method. Women with VVC on HAART were recruited from a primary healthcare clinic in KwaZulu-Natal Province, South Africa, between June 2011 and December 2011. VVC was diagnosed clinically, supported by Gram staining and culture of genital secretions. HIV RNA load was determined by reverse transcription polymerase chain reaction. CD4+ counts were obtained from patients’ medical records.

Results. Plasma HIV RNA …

Rapid Kinetics Of Iron Responsive Element (Ire) Rna/Iron Regulatory Protein 1 And Ire-Rna/Eif4f Complexes Respond Differently To Metal Ions, Mateen A. Khan, Jia Ma, William E. Walden, William C. Merrick, Elizabeth C. Theil, Dixie J. Goss

Publications and Research

Metal ion binding was previously shown to destabilize IRE-RNA/IRP1 equilibria and enhanced IRE-RNA/eIF4F equilibria. In order to understand the relative importance of kinetics and stability, we now report rapid rates of protein/RNA complex assembly and dissociation for two IRE-RNAs with IRP1, and quantitatively different metal ion response kinetics that coincide with the different iron responses in vivo. kon, for FRT IRE-RNA binding to IRP1 was eight times faster than ACO2 IRE-RNA. Mn2+ decreased kon and increased koff for IRP1 binding to both FRT and ACO2 IRE-RNA, with a larger effect for FRT IRE-RNA. In order to further understand IRE-mRNA regulation …

A Method To Make A Craniotomy On The Ventral Skull Of Neonate Rodents, Adrián Rodríguez-Contreras, Lingyan Shi, Bingmei M. Fu

Publications and Research

The use of a craniotomy for in vivo experiments provides an opportunity to investigate the dynamics of diverse cellular processes in the mammalian brain in adulthood and during development. Although most in vivo approaches use a craniotomy to study brain regions located on the dorsal side, brainstem regions such as the pons, located on the ventral side remain relatively understudied. The main goal of this protocol is to facilitate access to ventral brainstem structures so that they can be studied in vivo using electrophysiological and imaging methods. This approach allows study of structural changes in long-range axons, patterns of electrical …

Rational Strategy For Shaped Nanomaterial Synthesis In Reverse Micelle Reactors, Zengyan Wei, Hiroshi Matsui

Publications and Research

The shape-controlled synthesis of nanoparticles was established in single-phase solutions by controlling growth directions of crystalline facets on seed nanocrystals kinetically; however, it was difficult to rationally predict and design nanoparticle shapes. Here we introduce a methodology to fabricate nanoparticles in smaller sizes by evolving shapes thermodynamically. This strategy enables a more rational approach to fabricate shaped nanoparticles by etching specific positions of atoms on facets of seed nanocrystals in reverse micelle reactors where the surface energy gradient induces desorption of atoms on specific locations on the seed surfaces. From seeds of 12 nm palladium nanocubes, the shape is evolved …

Bioactivities Of Compounds From Elephantopus Scaber, An Ethnomedicinal Plant From Southwest China, Jianjun Wang, Ping Li, Basosai Li, Zhiyong Guo, Edward J. Kennelly, Chunlin Long

Publications and Research

Elephantopus scaber is an ethnomedicinal plant used by the Zhuang people in Southwest China to treat headaches, colds, diarrhea, hepatitis, and bronchitis. A new δ-truxinate derivative, ethyl, methyl 3,4,3′,4′-tetrahydroxy-δ-truxinate (1), was isolated from the ethyl acetate extract of the entire plant, along with 4 known compounds. The antioxidant activity of these 5 compounds was determined by ABTS radical scavenging assay. Compound 1 was also tested for its cytotoxicity effect against HepG2 by MTT assay (IC50 = 60 μM), and its potential anti-inflammatory, antibiotic, and antitumor bioactivities were predicted using target fishing method software.

Towards Structural Systems Pharmacology To Study Complex Diseases And Personalized Medicine, Lei Xie, Xiaoxia Ge, Hepan Tan, Li Xie, Yinliang Zhang, Thomas Hart, Xiaowei Yang, Philip E. Bourne

Publications and Research

Genome-Wide Association Studies (GWAS), whole genome sequencing, and high-throughput omics techniques have generated vast amounts of genotypic and molecular phenotypic data. However, these data have not yet been fully explored to improve the effectiveness and efficiency of drug discovery, which continues along a one-drug-one-target-one-disease paradigm. As a partial consequence, both the cost to launch a new drug and the attrition rate are increasing. Systems pharmacology and pharmacogenomics are emerging to exploit the available data and potentially reverse this trend, but, as we argue here, more is needed. To understand the impact of genetic, epigenetic, and environmental factors on drug action, …

Letter To The Editor, Sally G. Hoskins, Kristy L. Kenyon

Publications and Research

No abstract provided.

Hitting The Target: Fragment Screening With Acoustic In Situ Co-Crystallization Of Proteins Plus Fragment Libraries On Pin-Mounted Data-Collection Micromeshes, Xingyu Yin, Alexander Scalia, Ludmila Leroy, Christina M. Cuttitta, Gina M. Polizzo, Daniel L. Ericson, Christian G. Roessler, Olven Campos, Millie Y. Ma, Rakhi Agarwal, Rick Jackimowicz, Marc Allaire, Allen M. Orville, Robert M. Sweet, Alexei S. Soares

Publications and Research

A method is presented for screening fragment libraries using acoustic droplet ejection to co-crystallize proteins and chemicals directly on micromeshes with as little as 2.5 nl of each component. This method was used to identify previously unreported fragments that bind to lysozyme, thermolysin, and trypsin.

Undergraduate Urban Metagenomics Research Module†, Theodore R. Muth, Catherine M. Mcentee

Publications and Research

No abstract provided.

Use Of A Modified Pogil Exercise To Teach Bacterial Transformation In A Microbiology Course, Elizabeth A. Mulligan

Publications and Research

No abstract provided.

Expression Of Toll-Like Receptor (Tlr)-2 And Tlr4 In Monocytes Following Stimulations By Genital Secretions Of Hiv Infected And Uninfected Women With Symptomatic Vulvo-Vaginal Candidiasis, Teke Apalata, Benjamin Longo-Mbenza, A. Willem Sturm, William H. Carr, Prashini Moodley

Publications and Research

Vulvo-vaginal candidiasis (VVC) is a common condition in human immunodeficiency virus (HIV)- infected women. Toll-like receptor (TLR) 2 and TLR4 are key pattern-recognition receptors of the innate immune system in sensing Candida albicans. The aim of this study was to assess the expression of TLR2 and TLR4 signaling pathways in HIV-infected and uninfected women with VVC. Cervico-vaginal fluids (CVF) were obtained from 7 HIV infected and 11 HIV uninfected clinic attendees in KwaZulu-Natal between June, 2011 and December, 2011. VVC was diagnosed clinically and confirmed by Gram stain and culture of genital samples. Monocytes were isolated from a healthy adult …

Engaging Allied-Health Students With Virtual Learning Environment Using Course Management System Tutorial Site†, Andrew Nguyen, Mangala Tawde

Publications and Research

No abstract provided.

Altered Regional And Circuit Resting-State Activity Associated With Unilateral Hearing Loss, Xingchao Wang, Yang Fan, Fu Zhao, Zhenmin Wang, Jianqiao Ge, Kai Zhang, Zhixian Gao, Jia-Hong Gao, Yihong Yang, Jin Fan, Qihong Zou, Pinan Liu

Publications and Research

The deprivation of sensory input after hearing damage results in functional reorganization of the brain including cross-modal plasticity in the sensory cortex and changes in cognitive processing. However, it remains unclear whether partial deprivation from unilateral auditory loss (UHL) would similarly affect the neural circuitry of cognitive processes in addition to the functional organization of sensory cortex. Here, we used resting-state functional magnetic resonance imaging to investigate intrinsic activity in 34 participants with UHL from acoustic neuroma in comparison with 22 matched normal controls. In sensory regions, we found decreased regional homogeneity (ReHo) in the bilateral calcarine cortices in UHL. …

Mafia Or Farmer? Coevolutionary Consequences Of Retaliation And Farming As Predator Strategies Upon Host Nests By Avian Brood Parasites, Mark E. Hauber

Publications and Research

Many host species of avian brood parasites have evolved to recognize and reject foreign eggs and chicks in the nest. Yet, other hosts accept and care for parasitic young, despite the fitness losses associated with raising non-kin. It has been suggested that nest predation upon host nests by brood parasites could select for coevolved acceptance by hosts, even when their cognitive and motor traits allow for the successful rejection of brood parasitism. Using a modeling approach, I analyzed the conditions that favor the evolution of two predatory strategies by parasites and the acceptance of parasitism in the presence of predatory …

Salient Distractors Can Induce Saccade Adaptation, Afsheen Khan, Sally A. Mcfadden, Mark Harwood, Josh Wallman

Publications and Research

When saccadic eye movements consistently fail to land on their intended target, saccade accuracy is maintained by gradually adapting the movement size of successive saccades. The proposed error signal for saccade adaptation has been based on the distance between where the eye lands and the visual target (retinal error). We studied whether the error signal could alternatively be based on the distance between the predicted and actual locus of attention after the saccade. Unlike conventional adaptation experiments that surreptitiously displace the target once a saccade is initiated towards it, we instead attempted to draw attention away from the target by …

The Antigenic Determinant That Defines Thymic Nurse Cells Is Expressed By Thymic Epithelial Progenitor Cells, Rajendra V. E. Chilukuri, Viral K. Patel, Marcia Martinez, Jerry C. Guyden, Michael D. Samms

Publications and Research

Stromal thymic epithelial cells with the multicellular structure unique to thymic nurse cells (TNCs) express the pH91 antigen on their cell surfaces. The multicellular TNC-complexes develop through an intimate association between αβTCR+CD4+CD8+ thymocytes and pH91-expressing cortical epithelial cells. TNCs participate in MHC-restriction and exhibit epithelial cell progenitor characteristics. In this report, we show that as early as E11.5 stage of thymus development, the pH91 antigen is expressed in association with K8, K5, Foxn1, and p63. The expression of these epithelial progenitor markers along with the pH91 antigen persists throughout thymic development in the murine thymus. At E13.5, pH91+ cells express …

Host Responses To Interspecific Brood Parasitism: A By-Product Of Adaptations To Conspecific Parasitism?, Peter Samas, Mark E. Hauber, Phillip Cassey, Tomáš Grim

Publications and Research

Background: Why have birds evolved the ability to reject eggs? Typically, foreign egg discrimination is interpreted as evidence that interspecific brood parasitism (IP) has selected for the host’s ability to recognize and eliminate foreign eggs. Fewer studies explore the alternative hypothesis that rejection of interspecific eggs is a by-product of host defenses, evolved against conspecific parasitism (CP). We performed a large scale study with replication across taxa (two congeneric Turdus thrushes), space (populations), time (breeding seasons), and treatments (three types of experimental eggs), using a consistent design of egg rejection experiments (n = 1057 nests; including controls), in areas with …

Accelerated Repair Of Demyelinated Cns Lesions In The Absence Of Non-Muscle Myosin Iib, Tomasz Rusielewicz, Jennifer Nam, Evangelos Damanakis, Gareth R. John, Cedric S. Raine, Carmen V. Melendez-Vasquez

Publications and Research

The oligodendrocyte (OL), the myelinating cell of the central nervous system, undergoes dramatic changes in the organization of its cytoskeleton as it differentiates from a precursor (oligodendrocyte precursor cells) to a myelin-forming cell. These changes include an increase in its branching cell processes, a phenomenon necessary for OL to myelinate multiple axon segments. We have previously shown that levels and activity of non-muscle myosin II (NMII), a regulator of cytoskeletal contractility, decrease as a function of differentiation and that inhibition of NMII increases branching and myelination of OL in coculture with neurons. We have also found that mixed glial cell …

Bxpc3 Pancreatic Cancer Cells Express A Truncated Smad4 Protein Upon Pi3k And Mtor Inhibition, Onica Legendre, Ayisha Sookdeo, David A. Foster

Publications and Research

Smad4 is a critical regulator of transforming growth factor (TGF)-β signaling and is defective in numerous human cancers. In total, 30% of pancreatic cancers harbor a homozygous deletion of Smad4. The human pancreatic cancer cell line, BxPC3, has been reported to be Smad4-null due to a homozygous deletion and has been widely used as a Smad4-null model. The present study reports that Smad4 DNA is present in BxPC3 cells, and under conditions of suppressed mammalian target of rapamycin complex 1 (mTORC1) and phosphatidylinositol-3-kinase, a truncated Smad4 protein is expressed. While a high level of Smad4 protein can be expressed in …

Whole Shoot Mineral Partitioning And Accumulation In Pea (Pisum Sativum), Renuka P. Sankaran, Michael A. Grusak

Publications and Research

Several grain legumes are staple food crops that are important sources of minerals for humans; unfortunately, our knowledge is incomplete with respect to the mechanisms of translocation of these minerals to the vegetative tissues and loading into seeds. Understanding the mechanism and partitioning of minerals in pea could help in developing cultivars with high mineral density. A mineral partitioning study was conducted in pea to assess whole-plant growth and mineral content and the potential source-sink remobilization of different minerals, especially during seed development. Shoot and root mineral content increased for all the minerals, although tissue-specific partitioning differed between the minerals. …

Open Questions On The Mechanisms Of Neuromodulation With Applied And Endogenous Electric Fields, Shennan A. Weiss, Marom Bikson

Publications and Research

No abstract provided.

Determinants Of Symptomatic Vulvovaginal Candidiasis Among Human Immunodeficiency Virus Type 1 Infected Women In Rural Kwazulu-Natal, South Africa, Teke Apalata, William H. Carr, Willem A. Sturm, Benjamin Longo-Mbenza, Prashini

Publications and Research

Introduction. We sought to determine the association between HIV-induced immunosuppression, virologic correlates, and vulvovaginal candidiasis (VVC). Methods. This is a retrospective cohort study, where HIV infected and uninfected women were studied with VVC being the primary outcome. Ninety-seven HIV-infected and 101 HIV-uninfected women were enrolled between June and December 2011. Cases of VVC were confirmed. HIV RNA load was determined by RT-PCR and CD4 counts were obtained from medical records. Results. Fifty-two of 97 (53.6%) HIV-infected and 38/101 (37.6%) HIV-uninfected women were diagnosed with VVC (P = 0.032). The relative risk for VVC amongst HIV-infected patients was 1.53 (95% CI: …

Sample Limited Characterization Of A Novel Disulfide- Rich Venom Peptide Toxin From Terebrid Marine Snail Terebra Variegata, Prachi Anand, Alexandre Grigoryan, Mohammed H. Bhuiyan, Beatrix Ueberheide, Victoria Russell, Jose Quiñonez, Patrick Moy, Brian T. Chait, Sébastien F. Poget, Mandë Holford

Publications and Research

Disulfide-rich peptide toxins found in the secretions of venomous organisms such as snakes, spiders, scorpions, leeches, and marine snails are highly efficient and effective tools for novel therapeutic drug development. Venom peptide toxins have been used extensively to characterize ion channels in the nervous system and platelet aggregation in haemostatic systems. A significant hurdle in characterizing disulfide-rich peptide toxins from venomous animals is obtaining significant quantities needed for sequence and structural analyses. Presented here is a strategy for the structural characterization of venom peptide toxins from sample limited (4 ng) specimens via direct mass spectrometry sequencing, chemical synthesis and NMR …

Inhibition Of Fatty Acid Binding Proteins Elevates Brain Anandamide Levels And Produces Analgesia, Martin Kaczocha, Mario J. Rebecchi, Brian P. Ralph, Yu-Han Gary Teng, William T. Berger, William Galbavy, Matthew W. Elmes, Sherrye T. Glaser, Liqun Wang, Robert C. Rizzo, Dale G. Deutsch, Iwao Ojima

Publications and Research

The endocannabinoid anandamide (AEA) is an antinociceptive lipid that is inactivated through cellular uptake and subsequent catabolism by fatty acid amide hydrolase (FAAH). Fatty acid binding proteins (FABPs) are intracellular carriers that deliver AEA and related N-acylethanolamines (NAEs) to FAAH for hydrolysis. The mammalian brain expresses three FABP subtypes: FABP3, FABP5, and FABP7. Recent work from our group has revealed that pharmacological inhibition of FABPs reduces inflammatory pain in mice. The goal of the current work was to explore the effects of FABP inhibition upon nociception in diverse models of pain. We developed inhibitors with differential affinities for FABPs to …