Digital Commons Network^™

Data Driven Analysis Of Samara Seed Kinematics And Dynamics, Shashwat Sparsh

Master's Theses

Samara Seeds are a class of fruit most famously belonging to the Acer species and are characterized by their single-bladed geometry and their auto-rotation response during descent. This steady-state auto-rotation response is the subject of aerodynamic analysis which aim to quantify the performance. The period prior to the beginning of steady-state auto-rotation is classified as the transition regime and has not been the subject of intense scrutiny.

This thesis employs a data-driven approach to analyzing the kinematic and dynamic response of these seeds during both the transition and auto-rotation stages of flight to quantify the performance with respect to the …

Implementation Of Area-Based Aggregation On Multivariate Continuous Uncertain Data, Rahul Nair

Master's Theses

Uncertain data is incredibly widespread - from sensor data to AI-based learned information, there exists a need to associate information with a certain probability of its veracity. Traditional relational databases lack a built-in functionality to support uncertain data, instead assigning them boilerplate values. Probabilistic databases tackle this problem by assigning non-deterministic data with an associated, often discrete, probability. Variants of probabilistic databases, namely continuous uncertain databases, are used to better model data represented through ranges and distributions. This is especially applicable with sensor-based geographic data as most commercial equipment contains some inherent margin of error.

While uncertain and probabilistic databases …

Spatial And Functional Metrics For Analyzing Seedling Roots, Irina Ivchenko

Master's Theses

To study the complicated structure of a maestro pea seedling root, we investigate three spatial metrics and one functional metric. The spatial metrics are fractal dimension which measures the complexity, convex hull area which measures the occupied space, and Euler characteristic which topologically describes the shape of the root. We discuss the successes of various metrics and the possible limitations they bring to analysis. As a functional metric, we study the rhizosphere: the volume radially around the root branches from which the plant accesses nutrients and water. We investigate the relationship of the rhizosphere to the root, and propose how …

Fault Tolerant Dynamic Task Allocation For Heterogeneous Multi-Robot Systems, Jack R. Cline

Master's Theses

This research presents a novel approach to dynamic task allocation in heterogeneous multi-robot systems with integrated fault detection capabilities. As multiple industries are becoming more reliant on multi-robot systems for tasks, maintaining operational efficiency despite robot failures becomes critical. We propose a framework that combines optimization-based task allocation with a Kalman filter that estimates task progress for anomaly detection to identify unreliable agents and dynamically redistribute tasks. Observing values such as the normalized innovation squared (NIS), covariance, and progress rate, the algorithm can designate a robot as faulty. Embedding information about which robots are faulty in the task algorithm allows …

The Effects Of Sirulina And Nannochloropsis Supplementation On Broiler Performance, Intestinal Morphology, And Gut Microbiology, Emily Beckerman

Master's Theses

The poultry industry is constantly searching for new nutritional strategies and better feed conversion ratio to enhance broiler growth and productivity. Microalgae have been shown to improve broiler performance and health depending on species and supplementation levels. The objective of this study was to determine the effects of Spirulina supplementation (Experiment I) and Nannochloropsis supplementation (Experiment II) on broiler production performance, intestinal morphology, and gut microbiology. In Experiment I, a total of 270 broiler chicks (one-day-old Ross 708) were obtained from a local hatchery after vaccinating against Newcastle, Marek’s disease, and Infectious Bronchitis. They were weighed and sorted into 18 …

Understanding The Habitat Associations Of Nearshore Rockfishes Inside And Outside Of Marine Protected Areas Using Hook-And-Line Data, Kaila Raeanne Fritch

Master's Theses

Habitat is an important driver in shaping the distribution of a range of species. For demersal fish species, benthic habitat characteristics can drive distribution and community structure. Understanding the relationship between habitat and species distribution in important, especially for exploited species such as rockfishes (Sebastes spp.). Increased data on the relationship between rockfish and benthic habitat characteristics could enhance marine protected areas (MPAs) and management practices which are used to protect rockfishes along the U.S. West Coast. To address this, we used hook-and-line, catch-and-release data that were collected inside two MPAs on the central coast of California, and …

Compact, Low-Power Underwater Acoustic Modem Characterization And Sensing Network Node Implementation, Lucas W. Lucia

Master's Theses

There is a growing market for compact, power-efficient underwater communication technology. Due to the limited propagation of electromagnetic waves through water, modulated acoustic waves have emerged as an effective means of wireless communication underwater. In decades past, many acoustic modems had been developed primarily for defense customers in larger systems functioning at high power. In recent years, smaller, relatively inexpensive acoustic modems have become available on the market—but data on their performance in a real-world environment is scarce. Companies such as OWL Integrations are interested in employing such acoustic modems as part of sensing networks across multiple mediums. For such …

Deeppanorf: Deep Prior For Neural 3d Reconstruction From Sparse Panoramas, Edward Du

Master's Theses

Advances in neural field representations have led to a significant improvement in view synthesis quality. However, many current novel view synthesis methods rely on a dense set of input views, which can be impractical and inefficient in real-world applications. We propose DeepPanoRF, a novel method for 360◦ scene reconstruction from a sparse set of input equirectangular panoramas. Built upon K-Planes, a radiance field representation that encodes explicit features on orthogonal feature planes, our method does not directly learn feature grids. Instead, we parameterize the feature grids to enable sparse view reconstruction without pretraining or additional regularization. We implement a custom …

Spos: An Attestation Solution For The Detection And Mitigation Of Point Of Sale Malware, Damian Singh Dhesi

Master's Theses

Securing 95% of card present transactions, accounting for billions of transactions a year, has made EMV the premier protocol for card-based payment. Created by and named after Europay, Mastercard, and Visa, the EMV protocol provides multiple solutions to resolve security concerns with the outdated, swipe-based, magnetic stripe payment. Such solutions are Chip and PIN which provides a more secure transaction at a significant time cost and EMV contactless which provides improved security to Chip and PIN at greater ease of use with its quick, tap-to-pay based payment. However, regardless of how secure the EMV protocol makes the card side of …

Investigating Social Presence In Collaborative Keys For Asynchronous Courses, Lily P. Cook

Master's Theses

Asynchronous virtual courses have become increasingly popular in the years following the global Covid-19 pandemic. These courses, with no set meeting schedule, offer flexibility to both students and instructors, but pose challenges for developing a collaborative learning environment. The Community of Inquiry framework (Rourke et al., 1999) identifies three essential components in an online course necessary to foster a collaborative environment- teaching presence, cognitive presence, and social presence. Social presence is especially impacted in asynchronous learning settings, which presents challenges for the students to display their personalities and connect with the community. This study investigates Collaborative Keys (CKs), structured collaborative …

Analog Hardware Implementation Of A Linearly Constrained Quadratic Program Real-Time Solver, Claire E. Tylutki, Claire Tylutki

Master's Theses

This thesis presents the design, implementation, and analysis of a hardware system for solving Linearly Constrained Quadratic Programs (LCQPs) in real time. The architecture follows a generalized feedback structure composed of three key elements: gradient descent on the quadratic cost function, saturation-based nonlinearity to enforce inequality constraints, and an integral controller with an anti-windup mechanism to regulate dynamic behavior and determine steady-state error. This majority analog system converges with equilibria that satisfy the Karush-Kuhn-Tucker (KKT) optimality conditions. Using a representative LCQP, this work presents simulation of the circuit in PLECS and LT Spice to confirm the feasibility of the novel …

Adversarial Deep Reinforcement Learning For Tank Duel Simulation Using Lidar-Based Observations, Braedan Kennedy

Master's Theses

Previous research has demonstrated that reinforcement learning agents can learn to steer differential-drive robots around obstacles using 2D lidar scans as observations. However, these studies typically treat all range returns as undifferentiated obstacles—objects to avoid—without distinguishing between different object types. This thesis builds upon previous research by introducing an adversarial task in which an agent must interpret raw range readings to both avoid static obstacles and identify, pursue, and engage a hostile target.

To investigate this problem, this thesis introduces TankGame, a novel, lightweight 2D tank duel simulator. Each agent receives a 360° lidar scan, controls its motion via tread …

Distributed Formation Control Of Nonholonomic Mobile Robots: Safety-Critical Leader-Follower Approach With Obstacle Avoidance And Dynamic Reconfiguration, Kelvin C. Villago

Master's Theses

Networked control systems for multi-agent robotics have emerged as a critical paradigm for executing complex coordinated tasks in diverse environments. While formation control serves as the backbone of such systems, real-world deployment introduces significant challenges including communication constraints, environmental obstacles, and the need for adaptive reconfiguration. This research addresses these challenges by developing a novel unified framework that seamlessly integrates obstacle avoidance algorithms with dynamic formation reconfiguration capabilities, specifically designed for communication-limited networked control architectures. The proposed framework represents a significant advancement over existing approaches by simultaneously handling both static and dynamic obstacles while maintaining system cohesion under communication constraints. …

Opening The Black Box With Regal: A Novel Explainable Ai Approach To Uncover Key Predictors In Search And Rescue Success, Brandon Hyunjun Kim

Master's Theses

The outcome of a search and rescue (SAR) operation is influenced by a complex, non-linear interplay among numerous factors, including geographic context, subject-specific characteristics, and environmental conditions. The high dimensionality and intricate dependencies among these variables pose significant challenges to traditional exploratory modeling approaches, limiting their ability to uncover meaningful patterns and relationships associated with mission success. This study introduces Rules Based Explanations for Generated neighborhoods Around Localized cases (REGAL), a novel adaptation of the Local Interpretable Model-agnostic Explanations (LIME) framework to explain deep multimodal neural networks and what key features it assesses to determine search and rescue success. REGAL …

Sentry V3: Extending Context Switches On A Trusted Secure Coprocessor, Mark Kong

Master's Theses

Software correctness and integrity is only ensured through trust in the un- derlying hardware. However, modern computer systems are complex to design and secure. Thus, given the choice between performance and security, companies will often prioritize performance, resulting in vulnerable systems. This creates exploitable systems that must be patched retroactively because business value performance over security. One approach to this issue is to separate the root of security from the rest of the system to create a minimal trusted computing base. Trustguard is one instance of this. Trustguard implements a Containment Architecture with Ver- ified Output (CAVO) model which shows …

Optimizing Web Servers With Io_Uring, Mihika Nigam

Master's Theses

Modern web servers face unprecedented demands for high throughput and low latency [10] [11]. Yet, even the state-of-the-art optimizations often fail under heavy workloads on existing infrastructure. Despite advancements in hardware, communication between applications and the kernel remains a critical bottleneck.

Industry surveys reveal that over 50% of production servers still rely on traditional epoll-based architectures [5]. This research aims to investigate and characterize Linux’s new io_uring subsystem, which has the potential to overcome these challenges. Through controlled load testing of various existing architectures like event-driven, multi-process, and multi-threaded architectures (including other commercial servers), we demonstrate how io_uring can help …

Enhancement Of A Python Integral Boundary Layer Method, Jeffrey T. Azuma

Master's Theses

This thesis presents a series of additions to a Python based integral boundary layer software library known as PyBL. This library provides the user the means to calculate boundary layer properties using different models for boundary layer behavior. The additions feature the integration of a set of new laminar and turbulent integral boundary layer models originally developed for and currently found in the program XFOIL. These models were modified to fit the ODE solver method at the foundation of PyBL. A new method for PyBL that stitches a laminar and turbulent solution together has been developed to improve the ability …

Efficient Gan-Based Adversarial Example Generation Against Ml-Based Network Intrusion Detection Systems, Darren D. Hartono

Master's Theses

In the realm of network security, Network Intrusion Detection Systems (NIDS) are essential for identifying and mitigating malicious activities targeting networked devices. Traditionally, these systems have relied on signature-based and anomaly-based detection techniques. However, the increasing complexity and adapt- ability of cyber threats have driven the adoption of Machine Learning (ML) ap- proaches in modern NIDS, significantly improving their ability to detect a wider range of attack vectors. Despite these advancements, ML-based NIDS remain vulnerable to adversarial examples—deliberately crafted inputs designed to mislead models and trigger incorrect classifications. Originally identified in the field of computer vision, adversarial examples now pose …

Design And Development Of A Laboratory Star Tracker System, Kevin D. Iverson

Master's Theses

This thesis presents the design, calibration, and validation of a low-cost star tracker system and hardware-in-the-loop testbed intended for small satellite applications. The system is composed entirely of commercial off-the-shelf components and integrates both a custom star tracker and a screen-based star field simulator for controlled, repeatable testing. An analytical modeling approach was used in the early design phase to predict system accuracy based on key optical and geometric parameters, informing the selection and configuration of components and guiding the development of calibration routines.

A simulation environment was developed to validate the star tracker software and assess the impact of …

Hardware-In-The-Loop Testing For The Polysim Adcs Lab, Shealyn P. Miller

Master's Theses

Hardware-in-the-loop, HIL, testing is an important tool for the validation and verification of systems in the aerospace industry. A common subsystem to be tested using HIL testing is the attitude, dynamics, and controls subsystem, ADCS. This is due to HIL tests using realistic simulations of the space environment to control physical hardware. To create a HIL test, a simulation and HIL interface are needed to test and communicate with hardware. Using a Speedgoat Performance Real-Time Target Machine to communicate with a Raspberry Pi and a Simulink model, three tests were conducted to ensure communication was functioning properly. A simulation, in …

Identifying Interchromosomal Interactions Using A Graph-Based Computational Pipeline, Ethan Outangoun

Master's Theses

Current computational tools for analyzing chromatin organization are mainly focused on intrachromosomal interactions, despite growing evidence that suggests long-range interactions across chromosomes contribute to transcriptional regulation and disease development. This thesis aims to address this gap in interchromosomal genome analysis, presenting a robust computational pipeline that identifies a clique (i.e., a subgraph) of highly interacting trans-chromosomal regions anchored at a user-specified seed genomic locus. A weighted interaction network is constructed from an input Hi-C contact matrix, a widely used experimental assay for measuring genome-wide chromatin interactions. We model this input contact matrix as a graph and devise three different strategies …

Investigating And Evaluating Poison Unlearning Under Imperfect Detection, Mitashi D. Parikh

Master's Theses

Machine unlearning is an emerging field focused on removing the influence of specific data points from trained machine learning models. Early work in this field has primarily focused on privacy-oriented unlearning, often motivated by data protection regulations such as the GDPR. More recently, security-oriented unlearning has emerged as a response to data poisoning attacks, where malicious inputs are injected into training data to manipulate model behavior. In these security-oriented settings, unlearning methods aim to reverse the influence of malicious training data after a model has already been deployed. However, existing methods assume access to an accurately identified portion of poisoned …

Clusters, Trends, And Choices: Feature Selection In Interactive Statistical Graphics, Dylan Le

Master's Theses

Exploratory data analysis (EDA) is a method for uncovering the structure and key characteristics of data, often through the use of statistical graphics. These visual tools can reveal patterns and trends, and their effectiveness can be enhanced through interactivity. By enabling users to filter data, zoom, and toggle visual features, interactive plots can accelerate and enrich the EDA process. This study extends a previous graphical study by incorporating an interactive framework. Using a statistical lineup protocol with two target patterns (a linear trend and a clustering trend) participants interacted with plots by toggling various aesthetic features, including cluster coloring, ellipses …

The Effect Of Whole Fruits High In Anthocyanins On Markers Of Glycemic Control In Women, Sophia C. Johnson

Master's Theses

Cardiometabolic diseases are a significant health burden worldwide and remain the leading cause of death among adults in the United States. Type 2 diabetes mellitus (T2DM) is a central component of cardiometabolic dysfunction and substantially increases the risk for cardiovascular disease. As women enter the post-menopausal period, significant declines in estrogen levels lead to a heightened risk of T2DM in this population. Observational and experimental evidence has shown potential for fruits high in anthocyanins (ACs) to reduce the risk of T2DM and improve glycemic control. This systematic review and meta-analysis examined the current research on whole fruits high in ACs …

The Chumash War Of 1824: Revolution And Counterrevolution In The California Missions Santa Inés, Santa Barbara, And La Purísima, Joseph V. Payne

Master's Theses

In 1824, the Indigenous Chumash of Missions Santa Inés, Santa Barbara, and La Purísima de Concepción went to war against the settler-colonial system that bonded them to the mission lands and forced labor regime demanded by the Spanish Franciscan missionaries and compelled by Mexican military force in Alta California. The conflict lasted months and included violent battles and skirmishes at all three missions, the militant occupation and reclamation of La Purísima, a mass exodus to the interior of the territory, and the subsequent counterrevolutionary collaboration of the Spanish missionaries and Mexican military to return many (but not all) of the …

Adaptive Volatility Forecasting Models, Jeffrey K. Tan

Master's Theses

In finance, risk is often quantified by volatility, and computing accurate volatility forecasts — while vital to financial decision making — remains one of the most challenging tasks in financial modeling. This thesis, motivated in part by the Black-Scholes-Merton Model and its limitations, adopts a statistical approach to volatility forecasting. The two main models of interest are the Exponential Weighted Moving Average (EWMA) model and the GARCH(1,1) model. Specifically, this work expands upon a potential adaptive lambda algorithm for EWMA models first proposed by Bernard Bollen (2014), and this work also utilizes the Momentum of Predictability (MoP) to generate adaptive …

Ev Microgrid Inspired Open-Source Power Inverter, Bryan A. Carrillo Martinez

Master's Theses

The development of open-source power electronics platforms plays an instrumental role in accelerating microgrid deployment, electric vehicle (EV) integration, and educational access to embedded power electronic converters. This thesis presents the design, implementation, and validation of the Atinverter V2, an open-source DC to AC inverter intended for low power EV microgrid applications and educational settings. The Atinverter V2 integrates various hardware and software subsystems centered around the ATMEGA328P microcontroller, enabling PWM-based sinusoidal power inversion, DC/AC voltage and current sensing, and embedded control features. Software development leverages a C++ object-oriented library and multiple Arduino-based modules to facilitate modular and scalable operation. …

The Degrees Of The Irreducible Representations Of The Symmetric Group With Respect To Primes, Vanessa F. Beeler

Master's Theses

In this thesis, we explore the relationship between the degrees of irreducible matrix representations of the symmetric group and prime numbers. We start by building up the required background necessary to construct our results. We dive into topics of discrete mathematics including matrix representations, characters of representations, integer partitions, conjugacy classes, class functions, and tableaux. Some other key ingredients in our work include using character tables to classify the irreducible rep- resentations of the symmetric group and the hook-length formula to easily compute the degrees of these representations. Once we have laid the groundwork for our in- vestigation, we begin …

Subalpine And Alpine Plant Community Turnover In Yosemite National Park Following 30 Years Of Climate Warming, Rachel Friesen

Master's Theses

Subalpine and alpine regions in California are warming more rapidly than lower elevations. In response, high-elevation plants may acclimate or adapt to the new climate, move to higher elevations or latitudes, persist in refugia, or go extinct. While models predict substantial declines in subalpine and alpine plant communities due to discontinuous population distributions and lack of upslope area, actual responses may vary due to lags in dispersal, establishment, and extinction. Although shifts in high-elevation plant communities have been documented in other regions of the world, such changes have not yet been studied in Yosemite National Park. To assess high-elevation plant …

Assessment Of The Imx7ulp Heterogeneous Soc For Use In A Next Generation Student Cubesat Obc, Lorenzo A. Pedroza

Master's Theses

CubeSats represent a rapidly evolving platform for space research, industry, and education, demanding increasingly sophisticated onboard computing solutions that balance performance, fault tolerance, size, weight, and power constraints. Although the design of the Cal Poly's CubeSat Lab's (PolySat) current On-Board Computer (OBC) keeps up with many of these factors, the demands of modern workloads like fine attitude determination will start to outpace available compute. While the selection of a more capable processor to address this would have traditionally resulted in increased energy usage, modern system-on-chip (SoC) architectures offer novel ways to trade available compute for power savings on-the-fly. With this …