Digital Commons Network^™

An Analysis On Wildfire Mitigations Employed By Utilities In California, Evan Luu

Master's Theses

As climate change continues to worsen, environmental effects are felt by many people around the world. In California, some of its most damaging wildfires have been found to be started by utilities. As the state continues to suffer from worsening wildfire conditions, the utilities need to implement a variety of wildfire mitigations to help reduce the risk of wildfires that can affect the state and its residents. This paper analyzes the effectiveness of four mitigations employed across three California utilities and suggests potential ways for the mitigations to be used together. The technologies evaluated are covered conductor, rapid earth fault …

Polluting The Senses: The Impact Of Noise And Light Pollution On Fledgling Movement And Evolution Within The Avian Eye, Margaret C. Mackinlay

Master's Theses

There is more human-generated noise and light today than ever before, a trend tied to ongoing urbanization and with reverberating impacts on a wide range of organisms. While research on these impacts is mounting and particularly plentiful when it comes to birds, there is still much to explore within its effects on avian behavior, fitness, and evolution. In chapter 1, we investigated how fledgling movement is influenced by noise and light pollution. While adult birds have well-documented species-specific responses to these stimuli, fledglings are sorely understudied in this context. We experimentally manipulated light levels and took advantage of an existing …

The Biological, Physical And Chemical Response Of The Little Creek Watershed To The 2020 Czu Lighting Complex Fire, Natalie Fontana

Master's Theses

This post-fire study was conducted to characterize and observe fire induced changes in physical habitat parameters, water-quality conditions and macroinvertebrate assemblages in the Little Creek watershed, a tributary to Scotts Creek located in Cal Poly’s Swanton Pacific Ranch in Davenport, California. Pre-fire data was collected by a Cal Poly student, John Hardy, for his 2017 thesis. Post-burn bioassessment surveys for this study were repeated at four of the same study sites used by Hardy to provide comparisons to the California Stream Condition Index via a modified version of the State of California’s Surface Water Ambient Monitoring Program protocol. Macroinvertebrates were …

Diet Induced Metabolic Alterations In The Brain Tissues Of Juvenile Pigs With Non-Alcoholic Fatty Liver Disease, Rhesa Lacanienta

Master's Theses

The objective of this study was to investigate the diet-induced metabolic changes that affect the brain tissue of juvenile pigs with NAFLD. This study explored the liver- brain axis and metabolic markers in the frontal cortex (FC) affected by liver damage. 18 male (M) and 20 female (F) Iberian pigs were randomly allocated to 1 of 3 high-fructose high-fat liquid diets (lard, olive oil, and coconut oil) and fed for 10 consecutive weeks. “Healthy” Iberian pigs were fed a eucaloric diet to establish a physiological baseline. Protein precipitation extraction using ultra-performance liquid chromatography-tandem quadrupole mass spectrometry was performed for primary …

Evaluating Habitat Use By Nekton In Widgeon Grass (Ruppia Maritima), Shoal Grass (Halodule Wrightii), And Unvegetated Bottom Habitats In The Grand Bay National Estuarine Research Reserve, Jessica Woodall

Master's Theses

Seagrass beds support high biodiversity and animal abundance, serve as feeding grounds for a variety of animals, offer shelter from predation, and act as a nursery habitat for juveniles. The species composition of seagrass beds can impact their use as habitat by animals. Two common species of seagrass in the Gulf of Mexico are Ruppia maritima (widgeon grass) and Halodule wrightii (shoal grass). The shallow coastal waters of the Grand Bay National Estuarine Research Reserve (NERR) support both species, but the use of each seagrass as habitat by nekton is poorly understood, which can limit management decision-making. Nekton communities were …

Novel Method Of The Quantification Of Turbulent Fluid Flow In Silicone Artery Phantoms Using Acoustic Analysis, Julia Wong

Master's Theses

Cardiovascular disease is the leading cause of death globally and is responsible for taking 17.9 million lives per year. Despite the use of clinical treatments and detection methods, there remains a large population of individuals that suffer from CVD whose symptoms are left undetected and untreated prior to a life-threatening cardiac event. This highlights a need for an early detection method that can prevent the manifestation and worsening of the disease as well as address limitations of current early detection methods. An area of interest for early detection of CVD is subclinical atherosclerosis, which is the long, early, asymptomatic stage …

Development Of An Angiogenic Tissue-On-A-Chip Microenvironment, Eric Stuehr

Master's Theses

Preclinical testing is necessary to investigate the safety and efficacy of novel therapeutics before moving to clinical trials, yet approximately 90% of these therapies fail once tested in humans. This has led to increased interest in developing robust preclinical models that accurately mimic the complex human in vivo physiology. Microfluidic devices that can introduce dynamic conditions to 3D cell/organoid cultures, also known as tissue-on-a-chip, have emerged as physiologically relevant in vitro preclinical models that can achieve high throughput screening of therapeutics. The research presented here aimed to develop an angiogenic environment within a novel microfluidic device to stimulate formation of …

The Evaluation Of Calsporin And Imw50 On Production Performance, Microbial Population, And Immune Function Of The Laying Hen, Kayla N. Kleist

Master's Theses

The use of antibiotics as growth promotors in the food animal industry has led to the generation of antibiotic resistant microorganisms, which are a major health risk to humans. Therefore, bans and limitations, including the FDA’s veterinary feed directive, have been placed on the use of antibiotics as growth promotors, and there has been a push to find an adequate alternative. In the laying hen, probiotics and/or prebiotics have shown promise as they help promote the colonization of beneficial bacteria in the GI tract of the host, increase feed efficiency, increase egg production, and provide protection against pathogenic bacteria.

In …

Smartphone Based Object Detection For Shark Spotting, Darrick W. Oliver

Master's Theses

Given concern over shark attacks in coastal regions, the recent use of unmanned aerial vehicles (UAVs), or drones, has increased to ensure the safety of beachgoers. However, much of city officials' process remains manual, with drone operation and review of footage still playing a significant role. In pursuit of a more automated solution, researchers have turned to the usage of neural networks to perform detection of sharks and other marine life. For on-device solutions, this has historically required assembling individual hardware components to form an embedded system to utilize the machine learning model. This means that the camera, neural processing …

Guilty As Charged: The Role Of Judge Instructions On Metaphor Produced Biases In Jury Decision Making, Gina N. Rita

Master's Theses

In this study, we hope to determine if the placement of judge instructions mitigates our previous study’s effect of metaphors on memory and verdict decisions. Our previous study showed in the metaphor condition, participants were more likely to vote guilty and remember more metaphor-related evidence compared to those in the control group. In addition to replicating the previous study’s results, we hypothesize judge instructions stated at the beginning of the trial will have little influence on the metaphor effects, and judge instructions at the end of the trial will weaken these effects. Participants will be randomly assigned to one of …

"It's Good To Doubt Saints, Vladim.": Medieval Constructions Of Sainthood, Their Histories, And Their Cults In Leigh Bardugo's Shadow And Bone, Kacie Barrett

Master's Theses

The Grishaverse is the fictional world created by author Leigh Bardugo that encompasses three separate series and ten different books. First published in 2012, the Shadow and Bone trilogy introduces readers to the world of Ravka, its Grisha, and its saints. The story follows Alina as she moves from orphan and soldier to saint and martyr. Sankta Alina becomes a character of its own – a version of Alina communicated to the people of Ravka as a banner to rally behind. She is made into living saint. The questions raised by Leigh Bardugo are echoed in church history. Sainthood is …

Characterizing The Utility Of A Near Infrared Click Beetle Luciferase For Bli Applications, Giovanni Duca

Master's Theses

Bioluminescent imaging systems (BLI) have become a valuable tool for doing real-time in vivo studies. BLI systems typically allow for the imaging of surface and subsurface level tissues but as depth increases, the resolution decreases while the signal to noise ratio increases. Deep tissue imaging is therefore a major limitation for BLI. To address this limitation there has been a consistent movement in luciferase research to create long wavelength emitting luciferases that still have a high photon emission rate. Longer wavelengths of light are able to penetrate deeper tissues due to having a lower amount of absorbance and scattering from …

Physical Treatments To Modify The Functionality Of Carrot Pomace And The Development Of An Enhanced Beef Patty, Jordan O.A Richards

Master's Theses

Approximately one-third of the global food produced for human consumption is lost or wasted somewhere along the food chain. Carrots are one of the most important and widely produced root vegetables grown worldwide; they are rich in many beneficial bioactive compounds such as dietary fiber and carotenoids. Every year, an estimated 29% of processed carrots are lost as waste. The U.S. is the 3^rd largest producer of carrots worldwide, 85% of which come from California. During carrot juice processing, up to 50% of the raw material remains as carrot pomace. Carrot pomace may contain up to 55% total dietary …

Factors Affecting California Grassland Biodiversity: Two Case Studies, Nora Bales

Master's Theses

Biodiversity loss over the last century has been significant and is projected to increase. Biodiversity loss is accelerating due to climate change and habitat loss and degradation. Biodiversity supports key ecosystem services including pollination services, climate regulation, and water filtration. Biodiversity conservation is a top priority for land managers and researchers, however many ecological studies with practical applications lack a thorough understanding of the soil environment in their study system. We conducted two case studies integrating soil and plant data to answer management questions. The first case study investigated the relationship between a threatened plant, Hooveria purpurea var. purpurea and …

Investigating Putative Toxin-Immunity Pairs From A New Class Of Rhs Proteins In Pseudomonas Aeruginosa, Syed Faieq Imam

Master's Theses

Pseudomonas aeruginosa is a gram-negative, opportunistic pathogen that is ubiquitous in nature, especially in human/animal impacted environments. One of the reasons for this is the arsenal of protein systems and toxins that P. aeruginosa utilizes to mold its environment to suit its needs. Recently, we discovered a novel locus in the P. aeruginosa genome, which resembles other loci that are known to mediate interbacterial competition. Our bioinformatic analysis found this locus to be enriched in a rearrangement hotspot (rhs) motif which led us to ad-interim term the three ORFs of the loci as rhsB, rhsC, and rhsI. Furthermore, we have …

Hedgehog Signaling As An Underlying Mechanism For Midline Modification During Asexual Reproduction In Convolutriloba Longifissura Acoels, James M. Sikes Ph.D., Jaclyn Cherry

Master's Theses

The mechanisms that control midline specification and modification during post-embryonic development are some of the least understood in developmental biology.  Because acoel flatworms have varied modes of asexual reproduction which can involve the dramatic modification of their orthogonal axes and midline, we have chosen the acoel species Convolutriloba longifissura as a model to study the mechanisms behind midline modification.  C. longifissura asexually reproduces through a double fission process where novel midlines arise within laterally located tissues while the adult midline is destroyed prior to an initial transverse fission event, which is then followed by a second longitudinal fission.  Previous work …

An Examination Of School Resource Officers' Self-Perception Of Role, Student Encounters And Duties, Alexandra Swanty

Master's Theses

As the rates of school shootings and school violence rise, the effectiveness of school resource officers (SROs) has come into question. As of now, there is no nationwide standard for the role and duties of school resource officers. Therefore, these differ from state to state and even school district to school district. One variable that had yet to be examined was the impact that location has on the roles of school resource officers. From this, three different school resource officer roles were identified: teaching-based role, community-based role, and law enforcement-based role. To determine the relationship between these variables, an online …

Mate Choice And Sexual Conflict In A Livebearing Fish, Julia C. Kasper

Master's Theses

Eavesdropping occurs when a receiver extracts information from an interaction without directly engaging with the signaler. Eavesdropping has been shown to be an effective way of evaluating the quality of potential mates and their abilities in male-male competition, without having to directly interact with them, thereby reducing energy costs and mating harassment. Girardinus metallicus is a livebearing poeciliid fish endemic to Cuba whose mating system is dominated by mating harassment in the form of sneak copulations, persistent displaying, and male-male aggression. G. metallicus has a male specific polymorphism in both melanin coloration and behavior. Males with melanin coloration are known …

Animal Abuse And Psychopathy: Examining Psychopathic Personality Traits In Both Animal Abusers And Non-Abusers, Allison Renegar

Master's Theses

Despite the soaring popularity of household pets in America, very little thought is given about the rights of our domesticated animals to exist free from harm and abuse. Little research has been done concerning animal abuse as most studies measured animal abuse dichotomously, providing essentially no contextual information. The purpose of this study was to examine the relationship between psychopathy and animal abuse using the Psychopathic Personality Traits Scale (PPTS; Boduszek et al., 2016) and the Boat Inventory on Animal-Related Experiences (Boat Inventory; Boat, 1994) while accounting for other factors including what types of animals are abused and the methods …

Assessment Of Russian Olive As An Ecogeomorphic Agent On A West-Central Semiarid Prairie River, Antonio Reveles-Hernandez

Master's Theses

Rivers and their riparian zones provide important ecosystem services and are vulnerable to invasions from non-native vegetation that can impact community structure and river processes. Western United States rivers have been invaded by Russian olive (Elaeagnus angustifolia) and tamarisk (Tamarix spp.). The effects of Russian olive and tamarisk have been extensively studied on arid and semiarid rivers, but there has been a lack of studies on West-Central Semiarid Prairie rivers. To study the effects Russian olive and tamarisk, have had on West-Central Semiarid Prairie rivers, I used the Powder River as a model system. The Powder River is a West-Central …

Auto-Resistance Toward Snake Venom Metalloproteases In United States Pitvipers, Kaleb Hill

Master's Theses

Analysis of natural snake venom inhibitors in snake blood began in the 18th century with the pioneering work of Fontana on European vipers (Hawgood, 1995). Serum resistance to conspecific and heterospecific venoms has subsequently been identified in many snakes, but results vary. Many of these snakes demonstrating resistance are either allopatric or distantly related, making the ecological explanation of this resistance unclear. Auto-resistance to one’s own venom for protection against self-envenomation has been suggested to be provided by endogenous serum-based protective molecules that bind to the venom components. Toxin resistance could develop in venomous organisms resulting from the physiological production …

Mountain Lion Resource Selection In The California Central Coast: Modeling Habitat Suitability For A Large Carnivore In A Rapidly Changing Environment, Megan Elizabeth O'Connor

Master's Theses

Land use conversion toward agriculture such as orchards and vineyards can have severe negative impacts on habitat and wildlife, particularly large carnivores, globally through habitat fragmentation and loss. The mountain lion (Puma concolor) population in the California Central Coast is thought to provide “stepping-stone” connectivity between several severely genetically compromised coastal populations throughout the Santa Cruz Mountains and several mountain ranges in Southern California; however, the California Central Coast is one of the fastest-developing regions of California with little protection against future land use conversion. Conserving areas of and corridors between high-quality mountain lion habitat through conservation easements …

Genetic Parameters For Heat And Salinity Stress Tolerance In Northern Gulf Of Mexico Eastern Oyster, Crassostrea Virginica, Paul Mcdonald

Master's Theses

Summer mortalities in Gulf of Mexico eastern oysters have been linked to excessively high temperatures, and chronic exposure to low salinity. In this study, the feasibility of improving tolerance to these two stresses by selection was evaluated in common garden experiments employing a pool of 160 families. Heat stress tolerance was evaluated in seed (3.5 months) and adults (14 months) by applying a sustained temperature of 38-39 °C until all oysters expired. Low salinity challenges on juveniles (9 months) and adults (15 months) applied a salinity of 2.5 psu. Survival duration of individual oysters during challenges was recorded and tissue …

Annotation Of Non-Model Species’ Genomes, Taiya Jarva

Master's Theses

The innovations in high throughput sequencing technologies in recent decades has allowed unprecedented examination and characterization of the genetic make-up of both model and non-model species, which has led to a surge in the use of genomics in fields which were previously considered unfeasible. These advances have greatly expanded the realm of possibilities in the fields of ecology and conservation. It is now possible to the identification of large cohorts of genetic markers, including single nucleotide polymorphisms (SNPs) and larger structural variants, as well as signatures of selection and local adaptation. Markers can be used to identify species, define population …

Cultural Behaviors And Their Influence On The Proximal Femur: Comparisons Of Postural Behavior, Occupation, And Subsistence-Settlement Between A Pre-Contact And Historic Sample, Joanna Klein

Master's Theses

Little is known archaeologically about the Late Woodland Schroeder Mounds mortuary group from west-central Illinois. As such, bioarchaeological data is at the forefront of archaeological problem-solving for not only the site, but the geographical area as well. Skeletal data such as proximal femur angles and activity markers contribute to the understanding of subsistence-settlement trends and postural behavior of the mortuary complex. Femoral neck version is associated with postural behaviors such as squatting and kneeling. The neck-shaft angle is linked to mobility and settlement patterns. Bicondylar angle was explored to see if behaviors had any affect. Allen’s fossa and Poirier’s facet …

Porotic Hyperostosis And Cribra Orbitalia In The Adult Population Of Tipu, Miranda Hahn

Master's Theses

Tipu is a contact period Maya site in western Belize where a mission church and cemetery was established around AD 1560. An archaeological excavation in the 1980s recovered the remains of more than 550 individuals. In its unique location on the fringes of Spanish control, Tipu was the site of both acceptance of introduced cultural traits as well as rebellion against them. The series has been intensively studied over the last decades, but an analysis of anemia using more recently developed and widely accepted standards has not yet been completed. Therefore, I scored adults using the new widely accepted standards …

Estimation Of Quantitative Genetic Parameters Of The Eastern Oyster (Crassostrea Virginica) In The Gulf Of Mexico, Heather King

Master's Theses

The decline of natural oyster reefs in Gulf of Mexico (Gulf) states has stimulated the development of aquaculture to support the industry and restoration programs. Gulf habitats feature diverse salinity environments that may require oysters bred for habitat-specific optimal genetic characteristics. In this work, genetic parameters for performance in habitats with different salinity were estimated. In September 2020, 102 males and 102 females sourced from 17 natural reefs across the northern Gulf were bred according to 2 males x 2 females non-overlapping factorial crossing designs, resulting in 204 full and half sibs. All families were pooled after fertilization according to …

Evaluation Of Potential Surrogates For Listeria Monocytogenes In Fresh Citrus-Specific Validation Studies, Kimiko Grace Casuga

Master's Theses

The FSMA Produce Safety Rule (PSR) requires citrus packers to more closely assess, manage, and monitor food safety risks. Although there have been no foodborne illness outbreaks and only one recall in fresh citrus, the risk of pathogens coming in on the fruit and cross contamination during washing still exists. Packhouses have dynamic washing systems and in-plant validations may be the only way to demonstrate compliance with the PSR. In-plant validations use surrogates in place of pathogens, and none have been identified or validated for citrus. The aim of this research was to identify a surrogate for use in fresh …

Reducing Scope 3 Emissions By Investing In Regenerative Agriculture In Supply Chains, Stephanie Cain

Master's Theses

The agricultural industry has an opportunity to shift to a more sustainable practice that helps restore vital topsoil, improve water quality, reduce environmental impact, and sequester atmospheric carbon into the vast soil carbon pool. However, to implement these practices at considerable scale, agricultural producers require access to resources and capital they rarely have and can be difficult to acquire. As a company, investing in regenerative agriculture in supply chains can lead to reduced Scope 3 emissions, more resilient supply chains, and better marketability as an investment fund, an employer, and a brand. Insetting regenerative agriculture can protect supply chains against …

Food For Thought: The Effects Of Feeding On Neurogenesis In The Ball Python, Python Regius, Hannah F. Bow

Master's Theses

Pythons are a well-studied model of postprandial physiological plasticity. Consuming a meal has been shown by past work to evoke a suite of physiological changes in pythons and elicit one of the largest documented increases in post-feeding metabolic rates relative to resting values. However, little is known about how this plasticity manifests in the brains of ball pythons, Python regius. Previous work using the cell-birth marker 5-bromo-12’-deoxyuridine (BrdU) has shown that cell proliferation in the python brain increases six days following meal consumption. This study aimed to confirm these findings and build on them in the long term by …