Digital Commons Network^™

Methodologies For Solving Integrated Transportation And Scheduling Problems, Fereydoun Adbesh

Graduate Theses and Dissertations

This research proposes novel solution techniques to optimize two real-world problems in the area of scheduling and transportation. We first consider a model for optimizing the operations of dredges. In this problem, scheduling and assignment decisions are integrated across a finite planning horizon. Additional constraints and problem elements explicitly considered include, but are not limited, to environmental work window restrictions, budget limitations, dredge operation rates and schedule-dependent dredge availability. Our approach makes use of Constraint Programming (CP) to obtain quality and robust solutions within an amount of time small enough to be useful to practitioners. The expanded feature set of …

Developing Algorithms For Quantifying The Super Resolution Microscopic Data: Applications To The Quantification Of Protein-Reorganization In Bacteria Responding To Treatment By Silver Ions, Sai Divya Challapalli

Graduate Theses and Dissertations

Histone-like nucleoid structuring proteins (HNS) play significant roles in shaping the chromosomal DNA, regulation of transcriptional networks in microbes, as well as bacterial responses to environmental changes such as temperature fluctuations. In this work, the intracellular organization of HNS proteins in E. coli bacteria was investigated utilizing super-resolution fluorescence microscopy, which surpasses conventional microscopy by 10–20 fold in spatial resolution. More importantly, the changes of the spatial distribution of HNS proteins in E. coli, by addition of silver ions into the growth medium were explored. To quantify the spatial distribution of HNS in bacteria and its changes, an automatic method …

Role Of Incompatibility Group 1 (Inci1) Plasmid-Encoded Factors On Salmonella Enterica Antimicrobial Resistance And Virulence, Pravin Raghunath Kaldhone

Graduate Theses and Dissertations

Foodborne illnesses are a leading cause of infectious diseases in the world. Among enteric organisms Salmonella is a key pathogen. It’s high prevalence in poultry and other food-animal sources make it imperative to study. Salmonella has the ability to modify its genetic content with help of mobile genetic elements such as plasmids. Incompatibiltiy group 1 (IncI1) plasmids are commonly reported in Salmonella. This study evaluates role on IncI1 plasmids in antimicrobial resistance and virulence in Salmonella. Genetic determinants of resistance and virulence are noted among our IncI1-containing Salmonella isolates. These genetic elements are also transferable and reported to carry respective …

Evaluation Of The Impact Of Tart Cherries Polyphenols On The Human Gut Microbiota And Phenolic Metabolites In Vitro And In Vivo, Alba Claudia Mayta-Apaza

Graduate Theses and Dissertations

Tart cherries are polyphenol abundant stone fruits claimed to exert health benefits further of its nutritional properties. The abundant phytochemicals content in tart cherries also referred as dietary polyphenols have been considered as an effective natural antioxidant when added in daily diet. However, it has been hypothesized the intervention of gut microbiota on the overall functionality of such compounds. This thesis contains a wide-ranging literature review focused on tart cherry as a crop, current market, functional food, and several health benefits. Furthermore, the research done describes and in vitro and in vivo assays of a short-term dietary intervention of tart …

The Potential For Phosphorus Release From Floodplain Soils: Temporal Variability And Management Strategies, Megan Amanda Reavis

Graduate Theses and Dissertations

Soils may contain large amounts of legacy phosphorus (P) due to past application of excess fertilizers, releasing P during runoff and flood events. As the level of P in soils increases, the release of P from the soils increases, but the temporal fluctuations of this release are not well known. Experiments were conducted to examine 1) the variability of soluble reactive P (SRP) release from the soil throughout a year and 2) the effect of repeated flooding and drying cycles on release rates. Soil cores were collected 7 times throughout a year from 2 sites within the Watershed Research and …

A Comparative Life Cycle Assessment Of Nutritionally Equivalent Meals With And Without Pork, Kelli Young

Graduate Theses and Dissertations

The following report details a life cycle assessment of several dietary and meal scenarios with and without pork. The goal of the LCA was to identify the impacts of greenhouse gas emissions, water use, and land use of pork containing and porkless diets and meal plans in a field-to-fork analysis. The dietary and meal plan scenarios are iso-caloric meaning they contain the same number of calories. The first set of diets is based on a USDA consumption pattern, 2000 kcal per day. This diet was used to create three other dietary scenarios with and without pork. The USDA recommended food …

Developing Methods Of Obtaining Quality Failure Information From Complex Systems, Oladapo Olalekan Bello

Graduate Theses and Dissertations

The complexity in most engineering systems is constantly growing due to ever-increasing technological advancements. This result in a corresponding need for methods that adequately account for the reliability of such systems based on failure information from components that make up these systems.

This dissertation presents an approach to validating qualitative function failure results from model abstraction details. The impact of the level of detail available to a system designer during conceptual stages of design is considered for failure space exploration in a complex system. Specifically, the study develops an efficient approach towards detailed function and behavior modeling required for complex …

Laboratory Resistivity Measurements For Soil Characterization, Behdad Mofarraj Kouchaki

Graduate Theses and Dissertations

Field based electrical resistivity measurements, such as electrical resistivity tomography (ERT) and capacitively coupled resistivity (CCR), are geophysical methods that offer a non-destructive and rapid means to collect continuous data. As such, ERT and CCR are becoming increasingly popular tools for geotechnical engineers; however, it is challenging to derive geotechnical information such as soil type, density, and water content from the data. A laboratory geophysical investigation was carried out to gain a better understanding of the parameters that affect the electrical resistivity of soils and devise a relationship between resistivity and soil type or classification. In this study, a soil …

Noninvasive Measures Of Stress And Lameness In Broilers, Shawna L. Weimer

Graduate Theses and Dissertations

The concept of broiler chicken welfare has evolved from a component of animal husbandry to a label on a chicken product package. Recent attention from the public has led to the need for higher welfare standards for animal production. A primary concern of broiler production is low activity/locomotion attributed to fast growth rates leading to poor leg health. To collect the scientific data necessary to determine conditions providing the best welfare for the bird, multiple methods of assessment are required. Stress is influenced by external (temperature, humidity, lighting, stocking density) and internal (metabolism, thermoregulation, hormonal balance) factors. This series of …

Membranes For Food And Bioproduct Processing, Alexandru Marius Avram

Graduate Theses and Dissertations

Modified membranes for process intensification in biomass hydrolysis

Production of biofuels and chemicals from lignocellulosic biomass is one of the leading candidates for replacement of petroleum based fuels and chemicals. However, conversion of lignocellulosic biomass into fuels and chemicals is not cost effective compared to the production of fuels and chemicals from crude oil reserves. Some novel and economically feasible approaches involve the use of ionic liquids as solvents or co-solvents, since these show improved solvation capability of cellulose over simple aqueous systems. Membranes offer unique opportunities for process intensification which involves fractionation of the resulting biomass hydrolysate leading to …

Evaluating One-Step Catalytic Free Method Including Hydrolysis, Esterification, Transesterification, And Degradation Reactions To Produce Biodiesel From Soybean Oil, Mahmood Gheni Jebur

Graduate Theses and Dissertations

Due to the environmental and economic impacts of diesel fuel based on petroleum, several studies have been done to find an alternative source of energy. Biodiesel is considered one of these alternative sources. It is a renewable source of energy produced from vegetable oils and animal fats. There are two main reaction routes used to produce biodiesel (fatty acid methyl esters). Transesterification reaction is the first route used to convert triglycerides to fatty acid methyl esters (FAMEs), while hydrolysis followed by esterification reactions are the second route employed to convert triglycerides to free fatty acids (FFA) and then further converted …

Removal Of Endocrine Disrupting Compounds Using Membrane Bioreactor, Mohanad Ali Abdulsahib Kamaz

Graduate Theses and Dissertations

The presence of endocrine disrupting compounds (EDCs) and pharmaceutically active compounds (PhAC) such as pesticides, personal care products, antibiotics and pharmaceutical compounds, in sewage, industrial, and domestic waters has extensively become the major concern for health and environmental organizations. These compounds have the ability to interact with mammalian endocrine system and disrupting their functions. The traditional activated sludge processes are designed to degrade solids, organic carbon and nitrogen loading. Although several treatment steps in a wastewater treatment plant can contribute to partial removal of EDCs, effective removal has been a challenge due to their resistant chemical and biological degradation and …

Modeling Ozark Caves With Structure-From-Motion Photogrammetry: An Assessment Of Stand-Alone Photogrammetry For 3-Dimensional Cave Survey, Joseph H. Jordan

Graduate Theses and Dissertations

Nearly all aspects of karst science and management begin with a map. Yet despite this fact, cave survey is largely conducted in the same archaic way that is has been for years - with a compass, tape measure, and a sketchpad. Traditional cave survey can establish accurate survey lines quickly. However, passage walls, ledges, profiles, and cross-sections are time intensive and ultimately rely on the sketcher’s experience at interpretively hand drawing these features between survey stations.

This project endeavors to experiment with photogrammetry as a method of improving on traditional cave survey, while also avoiding some of the major pitfalls …

Evaluating Thermal Comfort Of Broiler Chickens During Transportation Using Heat Index And Simulated Electronic Chickens, Kaushik Luthra

Graduate Theses and Dissertations

Broilers experience high physiological stress during pre-slaughter transport, especially under extremes of thermal environment. Characterization of thermal environment on the trailer is crucial to identify stress-prone regions during transportation. At the same time, Broilers experience high physiological stress during pre-slaughter transport, especially under extremes of thermal environment. Characterization of thermal environment on the trailer is crucial to identify stress-prone regions during transportation. At the same time, quantification of heat loss of the broilers loaded on trailers is important in understanding the well-being of the broilers. We have developed four electronic chickens (E-chickens) to simulate the sensible heat loss of live …

Bee Communities On Managed Emergent Wetlands In The Lower Mississippi Alluvial Valley Of Arkansas, Phillip Lee Stephenson

Graduate Theses and Dissertations

Native bee communities that use emergent wetlands are among the least studied systems in bee research. Most native bee species are thought to be in decline based on the loss of usable habitat across the United States. I surveyed emergent wetlands in the lower Mississippi Alluvial Valley of Arkansas during the summers of 2015 and 2016 using pan traps, blue-vane traps, and sweep nets to determine the current status of bee communities in this system. I surveyed 11 sites in 2015 and 17 sites in 2016 and found that bee communities were similar in actively versus passively managed emergent wetlands. …

Rna Sequencing In The Development Of Cancer-Cachexia, Thomas Allen Blackwell

Graduate Theses and Dissertations

Introduction: Cancer is a major public health problem in the U.S. and the world. In 2013 there were an estimated 1,660,290 new cases of cancer in the U.S. Cancer-Cachexia (CC) is a common effect of many cancers, and is directly responsible for 20-40% of cancer-related deaths. The mechanisms that control the development of CC are not well understood. Most investigations of CC focus on the post-cachectic state and do not examine the progression of the condition. The purpose of this study was to utilize RNA sequencing to analyze transcriptomic alterations throughout the progression of CC. Methods: Lewis Lung Carcinoma cells …

Experiment-Based Quantitative Modeling For The Antibacterial Activity Of Silver Nanoparticles, Mohammad Aminul Haque

Graduate Theses and Dissertations

Silver (Ag) has been well known for its antimicrobial activity for a long time. Recent research showed the potential of Ag nanoparticles as emerging antimicrobial agents. However, little quantitative analysis has been performed so far to decipher the mechanism of interaction between nanoparticles and bacteria. Here, a detailed analysis based on kinetic growth assay and colony forming unit assay has been carried out to study the antimicrobial effect of Ag nanoparticles against Escherichia coli (E. coli) bacteria. It was observed that the presence of Ag nanoparticles increased the lag time of bacterial growth while not affecting the maximum growth rate …

Interactive Effects Of Flow Regime, Climate Change, And Angler Harvest On Smallmouth Bass At The Southern Range Extent, Christopher Middaugh

Graduate Theses and Dissertations

The Ozark-Ouachita Interior Highlands of Arkansas, Oklahoma, and Missouri are the southern extent of native Smallmouth Bass Micropterus dolomieu range. Smallmouth Bass are an important species economically and ecologically, but it is unknown how climate change may affect them in this region and in particular how Smallmouth Bass may be affected differently across streams from various flow regimes. Here I present three projects investigating how climate change, flow regime, and angler harvest may interact to affect Smallmouth Bass over the coming century. I first modeled present and future water temperatures and calculated growth rate potential for Smallmouth Bass from streams …

Growth And Survivability Of Microorganisms At Martian Temperatures And Pressures, Rebecca Lynne Mickol

Graduate Theses and Dissertations

The discovery of methane in the martian atmosphere via numerous ground- and space-based sources has prompted the study of methanogens as models for life on Mars. Methanogens are microorganisms within the domain Archaea, many of which utilize carbon dioxide (CO2) and hydrogen to produce methane. The non-photosynthetic nature of methanogens indicates that they could exist in sub-surface environments, protected from harmful UV and ionizing radiation on the surface of Mars. These organisms also do not require organics, which are sparse on the planet.

Additionally, the wide variety of environments we find life in on Earth, as well as evidence for …

Instrumental Aspects Of Oxygen Sensing: Quantitation And Recalibration Of A Biofouled Oxygen Sensor, Marlena Patrick

Graduate Theses and Dissertations

In vivo oxygen sensing is a critical area of research for medical applications, such as ischemic stroke, but this important topic is not fully understood or resolved. In addition, the best method for calibration of in vivo sensors is as yet undetermined. For all implantable devices, biofouling, the adsorption of biological material to the device surface, is another significant problem with no clear or well-defined solution. One method employed is to apply a protective polymer membrane to the sensor surface in order to minimize the adsorption of biological material. The work described here investigates two polymers applied to a gold …

Characterization Of The Thermal Environment During Transport Of Commercial Broiler Chickens, Douglas J. Aldridge

Graduate Theses and Dissertations

Transport of commercial broiler chickens from the farm to the processing plant is perceived to compromise welfare under some circumstances. Research has been conducted using European standard equipment to characterize the environment experienced by poultry during broiler transport. In contrast no studies have been reported on the environment experienced by broilers under United States standard industry practices during transport. Moreover, microenvironment temperatures within industry trailers have not been reported.

The present study characterized the thermal micro-environment experienced by broiler chickens during transport across different seasons. The temperatures were influenced by temperature mitigation practices (plastic wrap, double side board, single side …

Effects Of Northern Bobwhite Management On Raccoon Abundance, Habitat Selection, And Home Range In Southwest Missouri, Jacob Cody Mcclain

Graduate Theses and Dissertations

Habitat management has become vital for northern bobwhite (Colinus virginianus) conservation. In Missouri, efforts to conserve remaining populations on public lands have included the use of two management models. The Intensive Management Model (IMM) promotes hard edges, by creating a juxtaposition of different habitat types, while the Extensive Management Model (EMM) maintains a grassland-dominated landscape through the processes of fire and grazing. Preliminary results suggest that bobwhite success is significantly higher on EMM sites than IMM sites. Management efforts through IMM may be hindered by unintentionally managing for nest predators like raccoons (Procyon lotor). Nest predators may forage more often …

Supplemental Trace Minerals (Zn, Cu, And Mn) As Sulfates Or Hydroxy Trace Mineral Sources For Beef Heifers, Randy Hunter Burnett

Graduate Theses and Dissertations

Crossbred heifers (n = 286, 255 ± 4.5 kg initial BW, 295 ± 16.5 d of age) were used over a 2-yr period to determine the effects of mineral source on beef heifer development at 2 locations (n = 71 and n = 72, Fayetteville, blocks 1 and 4; n = 72 in each of 2 breeding groups, Batesville, blocks 2 and 3). Heifers were stratified based on initial BW, age, health, prior research projects, and sire, and then assigned to 6 groups of 12 heifers, that were assigned randomly to 1 of 2 trace mineral treatments. The 2 treatments …

A Comparative Analysis Of Feed And Environmental Factors On Broiler Growth In The United States, Alexandra Gulli

Graduate Theses and Dissertations

Broiler production in the United States has become an important industry within the last half century. As the demand for poultry continues to increase and the concern of climate change also increases, it will become an important part of the industry to become more sustainable. This study uses a feed optimization model, a broiler growth model, and a life cycle assessment (LCA) to determine how feed ingredients and the barn environment can affect the broiler’s growth and production emissions. A multi-criteria ration optimization model is used to produce feeds based on carbon footprint and cost. A growth model is used …

Using Stable Isotope Geochemistry To Determine Changing Paleohydrology And Diagenetic Alteration In The Late Cretaceous Kaiparowits Formation, Ut Usa, Daigo Yamamura

Graduate Theses and Dissertations

The Western Interior Basin of the North America preserves one of the best sedimentary and paleontological records of the Cretaceous in the world. The Upper Cretaceous Kaiparowits Formation is a rapidly deposited fluvial sequence and preserves one of the most complete terrestrial fossil record of the North America. Such a unique deposit provides an opportunity to investigate the interaction between the physical environment and ecology. In an effort to decipher such interaction, stable isotope composition of cements in sedimentary rocks, concretions and vertebrate fossils were analyzed.

Despite the difference in facies and sedimentary architecture, the isotope composition does not change …

Improvement In Simple Artificial Insemination In Sheep Using Chilled Extended Semen And Consideration Of Fertility In Ewes, Mohan Acharya

Graduate Theses and Dissertations

Three studies were conducted to improve simple artificial insemination in sheep using chilled extended semen and evaluate methods to predict fertility in ewes. The first study evaluated the effect of semen extenders and storage temperature on motility parameters of ram semen stored for up to 72 h. Single semen collected from each ram was divided into four parts and extended using four extenders: milk, TRIS, TEST, and CJ-2, diluted to 600 million sperm/ml and loaded into 0.25 ml straws for storage at 4 and 15° C. Most of the CASA motility parameters were higher after extension and storage at 4 …

Genome Wide Association And Next Generation Sequencing Approaches To Map Determinants Of Ascites In Broiler Chickens, Shatovisha Dey

Graduate Theses and Dissertations

These studies have investigated different candidate genomic regions for their contributions to ascites in broilers. Ascites syndrome is a manifestation of idiopathic pulmonary arteriole hypertension that concerns the poultry industry worldwide. Investigations have demonstrated the disease to be genetically regulated and to exhibit moderate to high heritabilities. Although previous studies have indicated a few chromosomes to be involved with ascites, no genes have been identified to date with direct links to the disease. This dissertation presents a collection of studies that determine the genomic and genetic interactions for regions on chromosome 2 and 9 for ascites phenotypes in broiler chickens. …

Evaluating The Impact Of An All-Vegetable Protein Supplement Containing Fat Emulsifiers And Probiotics On Broiler Performance, Jordan Weil

Graduate Theses and Dissertations

Currently, several niche markets, such as organic and “all natural”, are marketed within the poultry industry. However, little research has been undertaken to determine the cost-effectiveness of poultry diets used to produce chicken within these markets. Specifically, the economics and resulting profits associated with raising chicken with antibiotic-free, all-vegetable (AV) diets are not evaluated. As national chain restaurants such as Chick-fil-A and Panera Bread begin to mandate poultry suppliers raise chicken without antibiotics and use AV diets, it becomes increasingly important to evaluate the economics for integrators. Given the rapidly changing feeding strategies necessary to respond to consumers’ and wholesalers’ …

Intravenous Administration Of Iron Oxide Nanoparticles In The Chicken Model, Huong Thi Ngoc Le

Graduate Theses and Dissertations

To be used in health care, the safety and effectiveness of nanoparticles needs to be tested in a living organism. The objective of this project was to develop the chicken as a convenient animal model to examine tissue targeting of intravenously (i.v.)-injected iron oxide (IO) nanoparticles. In Experiment 1, different doses of IO-COOH were i.v. injected into chickens; blood was collected at 0, 5, 15, 30, and 60 minutes post-injection; liver, spleen, lung, and kidney were collected after the last blood collection. For Experiment 2, IO-COOH and IO-PEG were i.v. injected into chickens; blood and the organs were collected at …

Simulation Modeling Approach For Evaluating A Solution Designed To Alleviate The Congestion Of Passenger Flow At The Composure Area Of Security Checkpoints, Maria Luisa Janer Rubio

Graduate Theses and Dissertations

In a previous study, we found that replacing the exit roller of a security checkpoint lane for a continuously circulating conveyor could potentially increase the throughput of passengers by over 28% while maintaining the TSA security-waiting time limit (Janer and Rossetti 2016). This study intends to expand this previous effort by investigating the impact of this circulating conveyor on the secondary screening related processes. Leone and Liu (2011) found that imposing a limit on the x-ray screening time, and diverting any item exceeding this limit to secondary screening, could decrease the waiting time by 43%. Our objective is to verify …