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Anomaly Detection In The Molecular Structure Of Gallium Arsenide Using Convolutional Neural Networks, Timothy Roche, Aihua W. Wood, Philip Cho, Chancellor Johnstone Aug 2023

Anomaly Detection In The Molecular Structure Of Gallium Arsenide Using Convolutional Neural Networks, Timothy Roche, Aihua W. Wood, Philip Cho, Chancellor Johnstone

Faculty Publications

This paper concerns the development of a machine learning tool to detect anomalies in the molecular structure of Gallium Arsenide. We employ a combination of a CNN and a PCA reconstruction to create the model, using real images taken with an electron microscope in training and testing. The methodology developed allows for the creation of a defect detection model, without any labeled images of defects being required for training. The model performed well on all tests under the established assumptions, allowing for reliable anomaly detection. To the best of our knowledge, such methods are not currently available in the open …

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On The Evaluation Of Entropy Threshold For Debonding During Crack Prorogation Using Dic Technique, A. Mahmoudi, M. R. Khosravani, M. M. Khonsari, Tamara Reinicke Aug 2023

On The Evaluation Of Entropy Threshold For Debonding During Crack Prorogation Using Dic Technique, A. Mahmoudi, M. R. Khosravani, M. M. Khonsari, Tamara Reinicke

Faculty Publications

The accumulated entropy at the crack tip of a semi-circular bending (SCB) specimen is investigated to obtain a threshold for material fracture and interatomic debonding. The presented approach uses the experimental data obtained from the Digital Image Correlation (DIC) technique and strain maps superposed to SCB specimens to measure the plastic flow at the crack tip. The Swift strain hardening model is utilized to calculate the stress domain at the crack tip and, consequently, the plastic strain energy and entropy accumulation. Results show that the crack surface propagates when the generated entropy at the crack tip reaches a critical limit. …

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The Association Between Covid-19 Preventive Behaviors And Mental Health Conditions, Elizabeth Wachira, Bhakti Chavan, Carolyn Nganga-Good, Caroline Kingori Aug 2023

The Association Between Covid-19 Preventive Behaviors And Mental Health Conditions, Elizabeth Wachira, Bhakti Chavan, Carolyn Nganga-Good, Caroline Kingori

Faculty Publications

Our findings highlight that individuals with mental health conditions reported more psychological distress. Specifically, feeling depressed, anxious, lonely, and hopeless were triggered and exacerbated as a result of the pandemic and may have long-term effects on general well-being and productivity. Therefore, our findings have important implications on the need to include mental health promotion as part of pandemic response efforts. This includes developing policies and allocating funding so as to ensure sustainable mental health interventions and support, public and provider education on the importance of screening for mental health issues.

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An Improved Framework For Estimating Organic Carbon Content Of Mangrove Soils Using Loss-On-Ignition And Coastal Environmental Setting, Joshua L. Breithaupt, Havalend E. Steinmuller, Andre S. Rovai, Kevin M. Engelbert, Joseph M. Smoak, Lisa G. Chambers, Kara R. Radabaugh, Ryan P. Moyer, Amanda Chappel, Derrick R. Vaughn, Thomas S. Bianchi, Robert R. Twilley, Paulo Pagliosa, Miguel Cifuentes-Jara, Danilo Torres Aug 2023

An Improved Framework For Estimating Organic Carbon Content Of Mangrove Soils Using Loss-On-Ignition And Coastal Environmental Setting, Joshua L. Breithaupt, Havalend E. Steinmuller, Andre S. Rovai, Kevin M. Engelbert, Joseph M. Smoak, Lisa G. Chambers, Kara R. Radabaugh, Ryan P. Moyer, Amanda Chappel, Derrick R. Vaughn, Thomas S. Bianchi, Robert R. Twilley, Paulo Pagliosa, Miguel Cifuentes-Jara, Danilo Torres

Faculty Publications

The use of loss on ignition (LOI) measurements of soil organic matter (SOM) to estimate soil organic carbon (OC) content is a decades-old practice. While there are limitations and uncertainties to this approach, it continues to be necessary for many coastal wetlands researchers and conservation practitioners without access to an elemental analyzer. Multiple measurement, reporting, and verification (MRV) standards recognize the need (and uncertainty) for using this method. However, no framework exists to explain the substantial differences among equations that relate SOM to OC; consequently, equation selection can be a haphazard process leading to widely divergent and inaccurate estimates. To …

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Extreme Events And Impacts On Organic Carbon Cycles From Ocean Color Remote Sensing: Review With Case Study, Challenges, And Future Directions, Eurico J. D'Sa, Maria Tzortziou, Bingqing Liu Aug 2023

Extreme Events And Impacts On Organic Carbon Cycles From Ocean Color Remote Sensing: Review With Case Study, Challenges, And Future Directions, Eurico J. D'Sa, Maria Tzortziou, Bingqing Liu

Faculty Publications

Extreme events and disturbances (e.g., tropical cyclones, extreme precipitation, and flooding often associated with land falling storms) affect aquatic carbon (C) cycling at multiple spatiotemporal scales and are most impactful in the coastal ocean with highly connected ecosystems that include rivers, estuaries, wetlands, and the continental shelf. Satellite remote sensing with its synoptic and repeated coverage over large regions and across a range of environmental conditions - including severe weather and natural disasters, has the potential to greatly expand our ability to monitor and quantify the impacts of extreme events on C cycling, particularly in the coastal zone. This review …

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Trophic Amplification: A Model Intercomparison Of Climate Driven Changes In Marine Food Webs, Vianney Guibourd De Luzinais, Hubert Du Pontavice, Gabriel Reygondeau, Nicolas Barrier, Julia L. Blanchard, Virginie Bornarel, Matthias Büchner, William W.L. Cheung, Tyler D. Eddy, Jason D. Everett, Jerome Guiet, Cheryl S. Harrison, Olivier Maury, Camilla Novaglio, Colleen M. Petrik, Jeroen Steenbeek, Derek P. Tittensor, Didier Gascuel Aug 2023

Trophic Amplification: A Model Intercomparison Of Climate Driven Changes In Marine Food Webs, Vianney Guibourd De Luzinais, Hubert Du Pontavice, Gabriel Reygondeau, Nicolas Barrier, Julia L. Blanchard, Virginie Bornarel, Matthias Büchner, William W.L. Cheung, Tyler D. Eddy, Jason D. Everett, Jerome Guiet, Cheryl S. Harrison, Olivier Maury, Camilla Novaglio, Colleen M. Petrik, Jeroen Steenbeek, Derek P. Tittensor, Didier Gascuel

Faculty Publications

Marine animal biomass is expected to decrease in the 21st century due to climate driven changes in ocean environmental conditions. Previous studies suggest that the magnitude of the decline in primary production on apex predators could be amplified through the trophodynamics of marine food webs, leading to larger decreases in the biomass of predators relative to the decrease in primary production, a mechanism called trophic amplification. We compared relative changes in producer and consumer biomass or production in the global ocean to assess the extent of trophic amplification. We used simulations from nine marine ecosystem models (MEMs) from the Fisheries …

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Does The Community Choice Aggregation Approach Advance Distributed Generation Development? A Case Study Of Municipalities In California, Robin M. Rotman, Jun Deng Aug 2023

Does The Community Choice Aggregation Approach Advance Distributed Generation Development? A Case Study Of Municipalities In California, Robin M. Rotman, Jun Deng

Faculty Publications

Globally, decentralized energy systems are gaining popularity due to their potential for energy accessibility, energy resilience, and sustainability benefits. Existing research on an energy system decentralization approach, community choice aggregation (CCA), shows its ability to lower energy costs and increase renewable electricity consumption for U.S. communities. Nevertheless, research on the relationship between CCA and distributed electricity generation development is lacking. This paper fills this gap by investigating if the CCA approach associates with distributed generation capacity interconnection in California municipalities. The finding shows that although the average capacity has increased for all municipalities throughout the study period, contrary to proponents’ …

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Metabolomic Evenness Underlies Intraspecific Differences Among Lineages Of A Wetland Grass, Ana L. Salgado, Andrea E. Glassmire, Brian E. Sedio, Rodrigo Diaz, Michael J. Stout, Jan Čuda, Petr Pyšek, Laura A. Meyerson, James T. Cronin Aug 2023

Metabolomic Evenness Underlies Intraspecific Differences Among Lineages Of A Wetland Grass, Ana L. Salgado, Andrea E. Glassmire, Brian E. Sedio, Rodrigo Diaz, Michael J. Stout, Jan Čuda, Petr Pyšek, Laura A. Meyerson, James T. Cronin

Faculty Publications

The metabolome represents an important functional trait likely important to plant invasion success, but we have a limited understanding of whether the entire metabolome or targeted groups of compounds confer an advantage to invasive as compared to native taxa. We conducted a lipidomic and metabolomic analysis of the cosmopolitan wetland grass Phragmites australis. We classified features into metabolic pathways, subclasses, and classes. Subsequently, we used Random Forests to identify informative features to differentiate five phylogeographic and ecologically distinct lineages: European native, North American invasive, North American native, Gulf, and Delta. We found that lineages had unique phytochemical fingerprints, although there …

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Non-Target Potential Of Neonicotinoid And Fungicide Seed Cane Treatments On Solenopsis Invicta, Hannah J. Penn, Paul M. White, Blake E. Wilson, Randy T. Richard Aug 2023

Non-Target Potential Of Neonicotinoid And Fungicide Seed Cane Treatments On Solenopsis Invicta, Hannah J. Penn, Paul M. White, Blake E. Wilson, Randy T. Richard

Faculty Publications

Traditionally, Louisiana sugarcane has been grown vegetatively from whole stalks, but innovations in machinery and rising labor costs have increased interest in billet planting. Billets, short stalk pieces containing several viable eyes, are more susceptible to pathogen exposure and may require fungicide and/or insecticide applications at planting to increase stand potential. Work in other crops indicates such treatments may alter arthropod predator abundance, so the goal of this study was to evaluate the potential non-target effects of select treatments at planting on the red important fire ant (RIFA), Solenopsis invicta, and other arthropod predators of the sugarcane borer, Diatraea saccharalis, …

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A Systematic Review On The Ecosystem Services Provided By Green Infrastructure, Daniel Jato-Espino, Fabio Capra-Ribeiro, Vanessa Moscardó, Leticia Bartolome Del Pino, Fernando Mayor-Vitoria, Laura Gallardo, Patricia Carracedo, Kristin Dietrich Aug 2023

A Systematic Review On The Ecosystem Services Provided By Green Infrastructure, Daniel Jato-Espino, Fabio Capra-Ribeiro, Vanessa Moscardó, Leticia Bartolome Del Pino, Fernando Mayor-Vitoria, Laura Gallardo, Patricia Carracedo, Kristin Dietrich

Faculty Publications

Urbanization and climate change are endangering the sustainability of public spaces through increased land artificialization, ecological fragmentation, reduced resource availability, and limited accessibility to natural and seminatural areas. Properly managing Green Infrastructure (GI) can contribute to mitigating these challenges by delivering multiple provisioning, regulating, supporting and cultural Ecosystem Services (ES). This would facilitate the implementation of strategically planned GI networks in cities for urban regeneration purposes. In this context, this study developed a systematic review on the ES provided by GI using the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement. The analysis of 199 eligible articles indicated …

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Roles Of Reservoirs In Regulating Basin Flood And Droughts Risks Under Climate Change: Historical Assessment And Future Projection, Jingxuan Sun, Wei Chen, Boting Hu, Y. Jun Xu, Guangxin Zhang, Yanfeng Wu, Baojun Hu, Zheng Song Aug 2023

Roles Of Reservoirs In Regulating Basin Flood And Droughts Risks Under Climate Change: Historical Assessment And Future Projection, Jingxuan Sun, Wei Chen, Boting Hu, Y. Jun Xu, Guangxin Zhang, Yanfeng Wu, Baojun Hu, Zheng Song

Faculty Publications

Study region: Nenjiang River Basin (NRB), Northeast China. Study focus: Water safety management and sustainable development planning increasingly seek to incorporate the impact of reservoirs on downstream floods and droughts; while the effectiveness of reservoir operation in regulating flood and drought risks under climate change has not been assessed extensively. We focus on discerning whether and to what extent reservoirs can mitigate the risk of hydrologic extremes from the perspective of historical and future climate change. New hydrological insight for the region: We found that coupling reservoir operations into basin hydrological simulation can efficiently improve model capacity to capture both …

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Longitudinal Assessment Of Cognitive Function In The Appswe/Ps1de9 Mouse Model Of Alzheimer's-Related Beta-Amyloidosis, Paul L. Soto, Michael E. Young, Giuliana M. Dimarco, Brianna George, Tatiana Melnikova, Alena V. Savonenko, Breanna N. Harris Aug 2023

Longitudinal Assessment Of Cognitive Function In The Appswe/Ps1de9 Mouse Model Of Alzheimer's-Related Beta-Amyloidosis, Paul L. Soto, Michael E. Young, Giuliana M. Dimarco, Brianna George, Tatiana Melnikova, Alena V. Savonenko, Breanna N. Harris

Faculty Publications

Preclinical models of Alzheimer's disease (AD)-related cognitive decline can be useful for developing therapeutics. The current study longitudinally assessed short-term memory, using a delayed matching-to-position (DMTP) task, and attention, using a 3-choice serial reaction time (3CSRT) task, from approximately 18 weeks of age through death or 72 weeks of age in APPswe/PS1dE9 mice, a widely used mouse model of AD-related amyloidosis. Both transgenic (Tg) and non-Tg mice exhibited improvements in DMTP accuracy over time. Breaks in testing reduced DMTP accuracy but accuracy values quickly recovered in both Tg and non-Tg mice. Both Tg and non-Tg mice exhibited high accuracy in …

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Residual-Based Error Correction For Neural Operator Accelerated Infinite-Dimensional Bayesian Inverse Problems, Lianghao Cao, Thomas O'Leary-Roseberry, Prashant K. Jha, J. Tinsley Oden, Omar Ghattas Aug 2023

Residual-Based Error Correction For Neural Operator Accelerated Infinite-Dimensional Bayesian Inverse Problems, Lianghao Cao, Thomas O'Leary-Roseberry, Prashant K. Jha, J. Tinsley Oden, Omar Ghattas

Faculty Publications

We explore using neural operators, or neural network representations of nonlinear maps between function spaces, to accelerate infinite-dimensional Bayesian inverse problems (BIPs) with models governed by nonlinear parametric partial differential equations (PDEs). Neural operators have gained significant attention in recent years for their ability to approximate the parameter-to-solution maps defined by PDEs using as training data solutions of PDEs at a limited number of parameter samples. The computational cost of BIPs can be drastically reduced if the large number of PDE solves required for posterior characterization are replaced with evaluations of trained neural operators. However, reducing error in the resulting …

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Quality Of Farmed Shrimp (Penaeus Monodon, Fabricius, 1798 And Macrobrachium Rosenbergii, Deman, 1879) As Affected By Melanosis Inhibiting Compounds, M. Khan, J. A. Lively Aug 2023

Quality Of Farmed Shrimp (Penaeus Monodon, Fabricius, 1798 And Macrobrachium Rosenbergii, Deman, 1879) As Affected By Melanosis Inhibiting Compounds, M. Khan, J. A. Lively

Faculty Publications

A problem associated with shrimp is blackspot or melanosis and to prevent blackspot, sulfites have been used for years but come with additional health risks. Newer 4-hexylresorcinol formulations exist that allow sulfite-free shrimp, but effects on the quality of Penaeus monodon Fabricius, 1798, and Macrobrachium rosenbergii, de Man, 1879, beyond melanosis prevention are unknown. Adverse effects on the quality of the shrimp from melanosis prevention treatments would negatively offset the benefits of a sulfite-free product. In order to determine if prevention compounds (sulfite powder or 4-hexylresorcinol based compounds, Everfresh® and Xyrex® Prawnfresh™) affect quality, proximate composition and total plate count …

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When Can Local Bird Detection Radars Best Complement Broad-Scale Early-Warning Forecasts Of Risk Potential For Bird–Aircraft Strikes As Part Of An Integrated Approach To Strike Mitigation?, Melanie R. Colón, Ashley M. Long Aug 2023

When Can Local Bird Detection Radars Best Complement Broad-Scale Early-Warning Forecasts Of Risk Potential For Bird–Aircraft Strikes As Part Of An Integrated Approach To Strike Mitigation?, Melanie R. Colón, Ashley M. Long

Faculty Publications

Worldwide, wildlife–aircraft strikes cost more than US$1.2 billion in aircraft damage and downtime and jeopardize the safety of aircrews, passengers, and animals. Radar has long been used to monitor flying animal movements and can be a useful tool for strike mitigation. In the USA, the Avian Hazard Advisory System (AHAS) is an early-warning system that integrates data from next-generation weather radar (NEXRAD) weather surveillance radars (WSRs) with historic bird occurrence data to quantify avian activity and forecast the relative bird risk within a ~9.3-km radius of military and civilian airfields. Bird detection radars (BDRs) with both horizontal-surveillance and vertical-scanning components …

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A High-Quality De Novo Genome Assembly For Clapper Rail (Rallus Crepitans), Elisa C. Elizondo, Brant C. Faircloth, Robb T. Brumfield, Subir B. Shakya, Vincenzo A. Ellis, Carl J. Schmidt, Adrienne I. Kovach, W. Gregory Shriver Aug 2023

A High-Quality De Novo Genome Assembly For Clapper Rail (Rallus Crepitans), Elisa C. Elizondo, Brant C. Faircloth, Robb T. Brumfield, Subir B. Shakya, Vincenzo A. Ellis, Carl J. Schmidt, Adrienne I. Kovach, W. Gregory Shriver

Faculty Publications

The clapper rail (Rallus crepitans), of the family Rallidae, is a secretive marsh bird species that is adapted for high salinity habitats. They are very similar in appearance to the closely related king rail (R. elegans), but while king rails are limited primarily to freshwater marshes, clapper rails are highly adapted to tolerate salt marshes. Both species can be found in brackish marshes where they freely hybridize, but the distribution of their respective habitats precludes the formation of a continuous hybrid zone and secondary contact can occur repeatedly. This system, thus, provides unique opportunities to investigate the underlying mechanisms driving …

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Impact Of Reactive Oxygen Species Scavenging On The Intermediate Production Of Anthracene And Anthraquinone In Fresh Versus Saltwater Environments, Scott J. St. Romain, Laura M. Basirico, Yong Ha Kim, Emily Vebrosky Nolan, Wei Xu, Kevin L. Armbrust Aug 2023

Impact Of Reactive Oxygen Species Scavenging On The Intermediate Production Of Anthracene And Anthraquinone In Fresh Versus Saltwater Environments, Scott J. St. Romain, Laura M. Basirico, Yong Ha Kim, Emily Vebrosky Nolan, Wei Xu, Kevin L. Armbrust

Faculty Publications

While salinity can alter the photodegradation of hydrophobic organic compounds (HOCs), the cause of their altered kinetics in seawater is not well understood. Because HOC intermediate photoproducts are often more toxic than their parent compounds, characterizing the generation of intermediates in saline environments is needed to accurately predict their health effects. The present study investigated the influence of salinity on the generation of anthraquinone through the photolysis of anthracene and the generation of anthrone and 1-hydroxyanthraquinone from the photolysis of anthraquinone as well as their reactivities with hydroxyl radicals. This was conducted by measuring the photolysis rates of anthracene and …

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On The Injectivity Of Integral Operators Related To The Euler–Poisson–Darboux Equation And Shifted K-Plane Transforms, Boris Rubin Aug 2023

On The Injectivity Of Integral Operators Related To The Euler–Poisson–Darboux Equation And Shifted K-Plane Transforms, Boris Rubin

Faculty Publications

We study injectivity of integral operators which map the Cauchy initial data for the Euler–Poisson–Darboux equation to the fixed time measurement of the solution of this equation. These operators generalize the well-known spherical means and are closely related to the shifted k-plane transforms, which assign to functions in Lp(Rn) their mean values over all k-planes at a fixed distance from the given k-planes. Several generalizations, including the Radon transform over strips of fixed width in R2 and a similar transform over tubes of fixed diameter in R3 , are considered.

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Fermi-Gbm Discovery Of Grb 221009a: An Extraordinarily Bright Grb From Onset To Afterglow, S. Lesage, P. Veres, M. S. Briggs, A. Goldstein, D. Kocevski, E. Burns, C. A. Wilson-Hodge, P. N. Bhat, D. Huppenkothen, C. L. Fryer, R. Hamburg, J. Racusin, E. Bissaldi, E. Bissaldi, W. H. Cleveland, S. Dalessi, C. Fletcher, M. M. Giles, B. A. Hristov, C. M. Hui, B. Mailyan, C. Malacaria, S. Poolakkil, O. J. Roberts, A. Von Kienlin, J. Wood, M. Ajello, M. Arimoto, L. Baldini, J. Ballet, M. G. Baring, D. Bastieri, J. Becerra Gonzalez Aug 2023

Fermi-Gbm Discovery Of Grb 221009a: An Extraordinarily Bright Grb From Onset To Afterglow, S. Lesage, P. Veres, M. S. Briggs, A. Goldstein, D. Kocevski, E. Burns, C. A. Wilson-Hodge, P. N. Bhat, D. Huppenkothen, C. L. Fryer, R. Hamburg, J. Racusin, E. Bissaldi, E. Bissaldi, W. H. Cleveland, S. Dalessi, C. Fletcher, M. M. Giles, B. A. Hristov, C. M. Hui, B. Mailyan, C. Malacaria, S. Poolakkil, O. J. Roberts, A. Von Kienlin, J. Wood, M. Ajello, M. Arimoto, L. Baldini, J. Ballet, M. G. Baring, D. Bastieri, J. Becerra Gonzalez

Faculty Publications

We report the discovery of GRB 221009A, the highest flux gamma-ray burst (GRB) ever observed by the Fermi Gamma-ray Burst Monitor (Fermi-GBM). This GRB has continuous prompt emission lasting more than 600 s, which smoothly transitions to afterglow emission visible in the Fermi-GBM energy range (8 keV-40 MeV), and total energetics higher than any other burst in the Fermi-GBM sample. By using a variety of new and existing analysis techniques we probe the spectral and temporal evolution of GRB 221009A. We find no emission prior to the Fermi-GBM trigger time (t 0; 2022 October 9 at 13:16:59.99 UTC), indicating that …

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Science Diplomacy From The Global South: The Case Of Intergovernmental Science Organizations, Anna Lena Rüland, Nicolas Rüffin, Katharina Cramer, Prosper Ngabonziza, Manoj Saxena, Stefan Skupien Aug 2023

Science Diplomacy From The Global South: The Case Of Intergovernmental Science Organizations, Anna Lena Rüland, Nicolas Rüffin, Katharina Cramer, Prosper Ngabonziza, Manoj Saxena, Stefan Skupien

Faculty Publications

Intergovernmental science organizations (IGSOs) address many challenges of the 21st century. Several countries of the Global South have joined established IGSOs or have created new ones. Yet we know little about their interests in IGSOs. Our study addresses this blind spot by investigating which objectives Southern actors pursue in IGSOs and under which conditions they are likely to achieve their objectives. Using insights from three strands of literature, we compare four IGSOs with Southern participation: the European Organization for Nuclear Research, the International Thermonuclear Experimental Reactor, the Square Kilometer Array, and the African Lightsource. We show that countries of the …

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Quasiparticle Spectroscopy, Transport, And Magnetic Properties Of Nb Films Used In Superconducting Qubits, Kamal R. Joshi, Sunil Ghimire, Makariy A. Tanatar, Amlan Datta, Jin Su Oh, Lin Zhou, Cameron J. Kopas, Jayss Marshall, Josh Y. Mutus, Julie Slaughter, Matthew J. Kramer, James A. Sauls, Ruslan Prozorov Aug 2023

Quasiparticle Spectroscopy, Transport, And Magnetic Properties Of Nb Films Used In Superconducting Qubits, Kamal R. Joshi, Sunil Ghimire, Makariy A. Tanatar, Amlan Datta, Jin Su Oh, Lin Zhou, Cameron J. Kopas, Jayss Marshall, Josh Y. Mutus, Julie Slaughter, Matthew J. Kramer, James A. Sauls, Ruslan Prozorov

Faculty Publications

Niobium thin films on silicon substrate used in the fabrication of superconducting qubits have been characterized using scanning and transmission electron microscopy, electrical transport, magnetization, the London penetration depth - based quasiparticle spectroscopy, and real-space real-time magneto-optical imaging. We study niobium films to provide an example of a comprehensive analytical set that may benefit superconducting circuits such as those used in quantum computers. The films have a superconducting transition temperature of Tc=9.35 K and a fairly clean superconducting gap. The estimated superfluid density is enhanced at intermediate temperatures. These observations are consistent with the recent theory of anisotropic strong-coupling superconductivity …

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In-Situ Transmission Electron Microscopy Investigation On Surface Oxides Thermal Stability Of Niobium, Jin Su Oh, Xiaotian Fang, Tae Hoon Kim, Matt Lynn, Matt Kramer, Mehdi Zarea, James A. Sauls, Alexander Romanenko, Sam Posen, Anna Grassellino, Cameron J. Kopas, Mark Field, Jayss Marshall, Hilal Cansizoglu, Kameshwar Yadavalli, Joshua Y. Mutus, Matthew Reagor, Lin Zhou Aug 2023

In-Situ Transmission Electron Microscopy Investigation On Surface Oxides Thermal Stability Of Niobium, Jin Su Oh, Xiaotian Fang, Tae Hoon Kim, Matt Lynn, Matt Kramer, Mehdi Zarea, James A. Sauls, Alexander Romanenko, Sam Posen, Anna Grassellino, Cameron J. Kopas, Mark Field, Jayss Marshall, Hilal Cansizoglu, Kameshwar Yadavalli, Joshua Y. Mutus, Matthew Reagor, Lin Zhou

Faculty Publications

Niobium is commonly used for superconducting quantum systems as readout resonators, capacitors, and interconnects. Structural defects at the Nb/Si and air/Nb interface may be a major source of two-level systems (TLS), which are detrimental to the device's coherence time. Thus, identifying and understanding the microscopic origin of possible TLS in Nb-based devices and their relationship to processing is key to superconducting qubit performance improvement. This work studied the structure and thermal stability of surface oxide on physical vapor deposited Nb films on Si wafers, using aberration-corrected (scanning) transmission electron microscopy and spectroscopy. All Nb films exhibit columnar growth with strong …

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The Master Growth Regulator Della Binding To Histone H2a Is Essential For Della-Mediated Global Transcription Regulation, Xu Huang, Hao Tian, Jeongmoo Park, Dong Ha Oh, Jianhong Hu, Rodolfo Zentella, Hong Qiao, Maheshi Dassanayake, Tai Ping Sun Aug 2023

The Master Growth Regulator Della Binding To Histone H2a Is Essential For Della-Mediated Global Transcription Regulation, Xu Huang, Hao Tian, Jeongmoo Park, Dong Ha Oh, Jianhong Hu, Rodolfo Zentella, Hong Qiao, Maheshi Dassanayake, Tai Ping Sun

Faculty Publications

The DELLA genes, also known as ‘Green Revolution’ genes, encode conserved master growth regulators that control plant development in response to internal and environmental cues. Functioning as nuclear-localized transcription regulators, DELLAs modulate expression of target genes via direct protein–protein interaction of their carboxy-terminal GRAS domain with hundreds of transcription factors (TFs) and epigenetic regulators. However, the molecular mechanism of DELLA-mediated transcription reprogramming remains unclear. Here by characterizing new missense alleles of an Arabidopsis DELLA, repressor of ga1-3 (RGA), and co-immunoprecipitation assays, we show that RGA binds histone H2A via the PFYRE subdomain within its GRAS domain to form a TF–RGA–H2A …

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Chemical Characterization And Impact Of Nipple Fruit (Solanum Mammosum) On The Characteristics Of Lactobacillus Acidophilus La K, Ricardo S. Aleman, Dany Avila, Allan Avila, Jack N. Losso, David Picha, Zhimin Xu, Kayanush Aryana Aug 2023

Chemical Characterization And Impact Of Nipple Fruit (Solanum Mammosum) On The Characteristics Of Lactobacillus Acidophilus La K, Ricardo S. Aleman, Dany Avila, Allan Avila, Jack N. Losso, David Picha, Zhimin Xu, Kayanush Aryana

Faculty Publications

Nipple fruit (Solanum mammosum) has been considered to have great pharmaceutical potential because of its high amounts of solamargine and solasonine. This study aimed to examine the effect of nipple fruit at different concentrations (0.5%, 1%, and 2% (w/v)) on the viability, acid, bile, lysozyme, and gastric juice tolerance, and protease activity of Lactobacillus acidophilus LA K. The viability was studied in MRS broth. Acid tolerance was determined by adjusting the pH to 2, whereas bile tolerance was examined with oxgall 0.3% (w/v) in MRS broth. Lysozyme resistance was investigated in an electrolyte solution with lysozyme (100 mg/L), while gastric …

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Optimizing Quantitative Trait Loci Introgression In Elite Rice Germplasms: Comparing Methods And Population Sizes To Develop New Recipients Via Stochastic Simulations, John Damien Platten, Roberto Fritsche-Neto Aug 2023

Optimizing Quantitative Trait Loci Introgression In Elite Rice Germplasms: Comparing Methods And Population Sizes To Develop New Recipients Via Stochastic Simulations, John Damien Platten, Roberto Fritsche-Neto

Faculty Publications

This study compared three strategies to develop new recipients for quantitative trait loci (QTL) introgression (background recovery [BG], selective sweep [SS] and breeding value [BV]) in a short-term rice breeding programme (over five breeding cycles). Furthermore, we evaluated two different numbers of recipients (10 and 20) in the introgression process and how they influence the population performance and the QTL fixation over cycles. Finally, we used the International Rice Research Institute (IRRI) rice breeding framework as the model to perform the stochastic simulations. Each strategy was simulated and replicated 100 times. Regardless of the selection strategy used, the QTL introgression …

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Unlocking The Potential Of Kinase Targets In Cancer: Insights From Canceromicsnet, An Ai-Driven Approach To Drug Response Prediction In Cancer, Manali Singha, Limeng Pu, Gopal Srivastava, Xialong Ni, Brent A. Stanfield, Ifeanyi K. Uche, Paul J.F. Rider, Konstantin G. Kousoulas, J. Ramanujam, Michal Brylinski Aug 2023

Unlocking The Potential Of Kinase Targets In Cancer: Insights From Canceromicsnet, An Ai-Driven Approach To Drug Response Prediction In Cancer, Manali Singha, Limeng Pu, Gopal Srivastava, Xialong Ni, Brent A. Stanfield, Ifeanyi K. Uche, Paul J.F. Rider, Konstantin G. Kousoulas, J. Ramanujam, Michal Brylinski

Faculty Publications

Deregulated protein kinases are crucial in promoting cancer cell proliferation and driving malignant cell signaling. Although these kinases are essential targets for cancer therapy due to their involvement in cell development and proliferation, only a small part of the human kinome has been targeted by drugs. A comprehensive scoring system is needed to evaluate and prioritize clinically relevant kinases. We recently developed CancerOmicsNet, an artificial intelligence model employing graph-based algorithms to predict the cancer cell response to treatment with kinase inhibitors. The performance of this approach has been evaluated in large-scale benchmarking calculations, followed by the experimental validation of selected …

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U-Net-Stn: A Novel End-To-End Lake Boundary Prediction Model, Lirong Yin, Lei Wang, Tingqiao Li, Siyu Lu, Zhengtong Yin, Xuan Liu, Xiaolu Li, Wenfeng Zheng Aug 2023

U-Net-Stn: A Novel End-To-End Lake Boundary Prediction Model, Lirong Yin, Lei Wang, Tingqiao Li, Siyu Lu, Zhengtong Yin, Xuan Liu, Xiaolu Li, Wenfeng Zheng

Faculty Publications

Detecting changes in land cover is a critical task in remote sensing image interpretation, with particular significance placed on accurately determining the boundaries of lakes. Lake boundaries are closely tied to land resources, and any alterations can have substantial implications for the surrounding environment and ecosystem. This paper introduces an innovative end-to-end model that combines U-Net and spatial transformation network (STN) to predict changes in lake boundaries and investigate the evolution of the Lake Urmia boundary. The proposed approach involves pre-processing annual panoramic remote sensing images of Lake Urmia, obtained from 1996 to 2014 through Google Earth Pro Version 7.3 …

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Object-Oriented Remote Sensing Approaches For The Detection Of Terrestrial Impact Craters As A Reconnaissance Survey, Habimana Emmanuel, Jaehyung Yu, Lei Wang, Sung Hi Choi, Digne Edmond Rwabuhungu Rwatangabo Aug 2023

Object-Oriented Remote Sensing Approaches For The Detection Of Terrestrial Impact Craters As A Reconnaissance Survey, Habimana Emmanuel, Jaehyung Yu, Lei Wang, Sung Hi Choi, Digne Edmond Rwabuhungu Rwatangabo

Faculty Publications

The purpose of this study is to employ a remote sensing reconnaissance survey based on optimal segmentation parameters and an object-oriented random forest approach to the identification of possible terrestrial impact craters from the global 30-m resolution SRTM DEM. A dataset consisting of 94 confirmed and well-preserved terrestrial impact craters, 104 volcanic calderas, and 124 valleys were extracted from real-world surface features. For craters with different sizes, eight optimal scale parameters from 80 to 3000 have been identified using multi-resolution segmentation, where the scale parameters have a positive correlation (R2 = 0.78) with the diameters of craters. The object-oriented random …

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Editorial Introduction: Exploring Theories And Subtleties Of The Policy Process, Geoboo Song, Melissa K. Merry, Nataliia Borozdina, Ben Galloway, Gwen Arnold, Aaron Smith-Walter, Holly L. Peterson, Creed Tumlison Aug 2023

Editorial Introduction: Exploring Theories And Subtleties Of The Policy Process, Geoboo Song, Melissa K. Merry, Nataliia Borozdina, Ben Galloway, Gwen Arnold, Aaron Smith-Walter, Holly L. Peterson, Creed Tumlison

Faculty Publications

No abstract provided.

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Mining Chinese Consumer Minds: Motivations For Selling Unwanted Fashion Items In Online Resale Marketplaces, Zhongjie Wang, Chuanlan Liu Aug 2023

Mining Chinese Consumer Minds: Motivations For Selling Unwanted Fashion Items In Online Resale Marketplaces, Zhongjie Wang, Chuanlan Liu

Faculty Publications

With the development of China’s fashion resale market, sustainable consumption patterns have gradually become popular in China. Although the prospects of China’s fashion resale market are recognized, more and more consumers are also actively participating in the circular consumption model. Consumers have multiple identities in participating in resale, and can be sellers or buyers. However, the sales intention of Chinese consumers to participate in resale as sellers is still unclear. We need to understand what value Chinese consumers are looking for in resale as sellers. The focus of this exploratory study is to understand the intention of Chinese consumers to …

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