Digital Commons Network^™

Predicting Climate Types For The Continental United States Using Unsupervised Clustering Techniques, D. Sathiaraj, X. Huang, J. Chen

Faculty Publications

The problem of clustering climate data observation sites and grouping them by their climate types is considered. Machine learning–based clustering algorithms are used in analyzing climate data time series from more than 3,000 climate observation sites in the United States, with the objective of classifying climate type for regions across the United States. Understanding the climate type of a region has applications in public health, environment, actuarial science, insurance, agriculture, and engineering. In this study, daily climate data measurements for temperature and precipitation from the time period 1946–2015 have been used. The daily data observations were grouped into three derived …

Optimizing N-Tier Application Scalability In The Cloud: A Study Of Soft Resource Allocation, Qingyang Wang, Shungeng Zhang, Yasuhiko Kanemasa, Calton Pu, Balaji Palanisamy, Lilian Harada, Motoyuki Kawaba

Faculty Publications

An effective cloud computing environment requires both good performance and high efficiency of computing resources. Through extensive experiments using a representative n-tier benchmark application (Rice University Bulletin Board System (RUBBoS)), we show that the soft resource allocation (e.g., thread pool size and database connection pool size) in component servers has a significant impact on the overall system performance, especially at high system utilization scenarios. Concretely, the same software resource allocation can be a good setting in one hardware configuration and then becomes an either under-or over-allocation in a slightly different hardware configuration, causing a significant performance drop. We have also …

Characterizing Location-Based Mobile Tracking In Mobile Ad Networks, Boyang Hu, Qicheng Lin, Yao Zheng, Qiben Yan, Matthew Troglia, Qingyang Wang

Faculty Publications

Mobile apps nowadays are often packaged with third-party ad libraries to monetize user data. Many mobile ad networks exploit these mobile apps to extract sensitive real-Time geographical data about the users for location-based targeted advertising. However, the massive collection of sensitive information by the ad networks has raised serious privacy concerns. Unfortunately, the extent and granularity of private data collection of the location-based ad networks remain obscure. In this work, we present a mobile tracking measurement study to characterize the severity and significance of location-based private data collection in mobile ad networks, by using an automated fine-grained data collection instrument …

Pore-Scale Modeling Of Nanoparticle Transport And Retention In Real Porous Materials, Paula C. Sanematsu, Karsten E. Thompson, Clinton S. Willson

Faculty Publications

Modern pore-scale modeling has the ability to simulate flow and particle (i.e., colloids, nanoparticles) transport at the pore- and particle-scale in realistic porous media. The pore structure of a material can be obtained through x-ray micro tomography (XCT) or a similar three-dimensional imaging technique. From these data sets, fluid and particle transport can be simulated by direct numerical simulation of the fundamental equations of motion. In this paper, we employ the finite element method to simulate Stokes flow and, after the flow field is resolved, Lagrangian particle tracking to track the fate and transport of nanoparticles (NPs). The presented methodology …

Geological And Production Uncertainty Assessments Of The Cyclic Co 2 -Assisted Gravity Drainage Eor Process: A Case Study From South Rumaila Oil Field, Watheq J. Al-Mudhafar, Dandina N. Rao, Sanjay Srinivasan

Faculty Publications

Risk or uncertainty assessment in the reservoir flow modeling, especially in real field-scale evaluation, is essential to make a trustful decision regarding the future development plans. This paper presents an efficient uncertainty assessment workflow of geological and production data through the cyclic CO 2 -assisted gravity drainage (GAGD) process in South Rumaila oil field in Southern Iraq. First, the sequential Gaussian simulation created a large number of reservoir stochastic realizations that capture the entire geological uncertainty space. Second, ranking was applied to select the quartiles (P 10 , P 20 , … , P 90) of reservoir permeability and anisotropy …

Development Of A Parameterized Reduced-Order Vertical-Axis Wind Turbine Wake Model, Eric Tingey, Andrew Ning

Faculty Publications

Analyzing or optimizing wind farm layouts often requires reduced-order wake models to estimate turbine wake interactions and wind velocity. We propose a wake model for vertical-axis wind turbines (VAWTs) in streamwise and crosswind directions. Using vorticity data from computational fluid dynamic (CFD) simulations and cross-validated Gaussian distribution fitting, we produced a wake model that can estimate normalized wake velocity deficits of an isolated VAWT using normalized downstream and lateral positions, tip-speed ratio, and solidity. Compared to CFD, taking over a day to run one simulation, our wake model predicts a velocity deficit in under a second with an appropriate accuracy …

Modeling Multirotor Aerodynamic Interactions Through The Vortex Particle Method, Eduardo Alvarez, Andrew Ning

Faculty Publications

Distributed electric propulsion and vertical take-off and landing has recently opened a new design space for urban air mobility. However, the use of multiple rotors operating in close proximity introduces complicated aerodynamic interactions that are not well understood, are not captured through conventional design tools, and need to be addressed in the conceptual design stage. This study investigates the accuracy of the viscous vortex particle method (VPM) in modeling rotor-on-rotor aerodynamic interactions in a side- by-side configuration as encountered in tilt-rotor, quadrotor, and distributed propulsion aircraft. The VPM approach has the potential to enable the use of mid/high fidelity models …

Finding Documents On The Joseph Smith Papers Website, Kenneth L. Alford Ph.D.

Faculty Publications

The Joseph Smith Papers website (josephsmithpapers.org) is a wonderful resource. With thousands of documents and hundreds of resource pages, though, it can sometimes feel like you’re searching for a needle in a haystack. The purpose of this article is to demonstrate how you might use the website to learn more about quotations and documents associated with the Prophet Joseph Smith. This article helps readers learn to use the Joseph Smith Papers website to find specific documents. It also teaches readers how to benefit from the numerous other resources available on the Joseph Smith Papers website.

Giving Taxpayer Rights A Seat At The Table, Leslie Book

Faculty Publications

How can Congress’s codification of the Taxpayer Bill of Rights (TBOR) make a meaningful difference in tax administration? This question will likely confront academics, policymakers, and judges in the coming years. In late 2015, Congress codified the rights that the Internal Revenue Service (IRS) administratively adopted in 2014, explicitly requiring that the Commissioner ensure that IRS employees receive training and act in accord with the codified rights. A recent article by Professors Alice Abreu and Richard Greenstein refers to the codification of TBOR as having the power to “transform the tax practice and the relationship between taxpayers and the IRS.” …

Report On Reparations For Victims Of Extraordinary Rendition And Torture, Deborah M. Weissman

Faculty Publications

No abstract provided.

Owning Colors, Deborah R. Gerhardt, John Mcclanahan Lee

Faculty Publications

Part I of this article explores how different disciplines have contended with understanding color as a signifier of embodied and referential meaning. As a path towards understanding embodied meaning, we summarize what scientific literature teaches about the process behind color vision and biological responses to different color wavelengths. We then turn to the referential or learned meaning of colors. The scholarly literature from psychology, art, religious history, marketing, political science, and behavioral economics overwhelmingly supports the proposition that color sends varied and contradictory expressive signals that are elastic over time and cultural context. Given the many possible and contradictory messages …

Exploratory Qualitative Study To Understand The Underlying Motivations And Strategies Of The Private For-Profit Healthcare Sector In Urban Bangladesh, Alayne Mary Adams, Rushdia Ahmed, Tanzir Ahmed Shuvo, Sifat Shahana Yusuf, Sadika Akhter, Iqbal Anwar

Faculty Publications

Objectives This paper explores the underlying motivations and strategies of formal small and medium-sized formal private for-profit sector hospitals and clinics in urban Bangladesh and their implications for quality and access.

Methods This exploratory qualitative study was conducted in Dhaka, Sylhet and Khulna City Corporations. Data collection methods included key informant interviews (20) with government and private sector leaders, in-depth interviews (30) with clinic owners, managers and providers and exit interviews (30) with healthcare clients.

Results Profit generation is a driving force behind entry into the private healthcare business and the provision of services. However, non-financial motivations are also emphasised …

Adiposity Mediates The Association Between The Dietary Inflammatory Index And Markers Of Type 2 Diabetes Risk In Middle-Aged Black South African Women, Asanda Mtintsilana, Lisa K. Micklesfield, Elin Chorell, Tommy Olsson, Nitin Shivappa, James R. Hebert, Andre P. Kengne, Julia H. Goedecke

Faculty Publications

The dietary inflammatory index (DII^®), a validated tool used to measure the inflammatory potential of the diet, has been associated with metabolic disorders in various settings, but not in African populations. The aim of this study was to investigate whether the DII is associated with markers of type 2 diabetes (T2D) risk, and if this association is mediated by adiposity and/or low-grade inflammation, in black South Africa women. Energy-adjusted-DII (E-DII) scores were calculated in 190 women (median age, 53 years) from the Birth-to-Twenty plus cohort using a validated food frequency questionnaire. Fasting glucose, insulin, HbA1c, and inflammatory cytokines …

Mercury Cycling In The North Pacific Subtropical Gyre As Revealed By Mercury Stable Isotope Ratios, Laura C. Motta, Joel D. Blum, Marcus W. Johnson, Blaire P. Umhau, Brian N. Popp, Spencer J. Washburn, Jeffrey C. Drazen, Claudia R. Benitez-Nelson, Cecelia C. S. Hannides, Hilary G. Close, Carl H. Lamborg

Faculty Publications

The oceans are an important global reservoir for mercury (Hg), and marine fish consumption is the dominant human exposure pathway for its toxic methylated form. A more thorough understanding of the global biogeochemical cycle of Hg requires additional information on the mechanisms that control Hg cycling in pelagic marine waters. In this study, Hg isotope ratios and total Hg concentrations are used to explore Hg biogeochemistry in oligotrophic marine environments north of Hawaii. We present the first measurements of the vertical water column distribution of Hg concentrations and the Hg isotopic composition in precipitation, marine particles, and zooplankton near Station …

International Comparison Of The Levels And Potential Correlates Of Objectively Measured Sedentary Time And Physical Activity Among Three-To-Four-Year-Old Children, Kaiseree I. Dias, James White, Russell Jago, Greet Cardon, Rachel Davey, Kathleen F. Janz, Russell R. Pate, Jardena J. Puder, John J. Reilly, Ruth Kipping

Faculty Publications

Physical activity (PA) patterns track from childhood through to adulthood. The study aimed to determine the levels and correlates of sedentary time (ST), total PA (TPA), and moderate-to-vigorous PA (MVPA) in preschool-aged children. We conducted cross-sectional analyses of 1052 children aged three-to-four-years-old from six studies included in the International Children’s Accelerometry Database. Multilevel linear regression models adjusting for age, gender, season, minutes of wear time, and study clustering effects were used to estimate associations between age, gender, country, season, ethnicity, parental education, day of the week, time of sunrise, time of sunset, and hours of daylight and the daily minutes …

The Kinesin‐3 Motor, Klp‐4, Mediates Axonal Organization And Cholinergic Signaling In Caenorhabditis Elegans, Margaret E. Magaletta, Kendall J. Perkins, Catherine P. Deuchler, Jay N. Pieczynski

Faculty Publications

Microtubule plus‐end directed trafficking is dominated by kinesin motors, yet kinesins differ in terms of cargo identity, movement rate, and distance travelled. Functional diversity of kinesins is especially apparent in polarized neurons, where long distance trafficking is required for efficient signal transduction‐behavioral response paradigms. The Kinesin‐3 superfamily are expressed in neurons and are hypothesized to have significant roles in neuronal signal transduction due to their high processivity. Although much is known about Kinesin‐3 motors mechanistically in vitro, there is little known about their mechanisms in vivo. Here, we analyzed KLP‐4, the Caenorhabditis elegans homologue of human KIF13A and KIF13B. …

Profiles Of Religiousness, Spirituality, And Psychological Adjustment In Emerging Adults, Carolyn Mcnamara Barry, Jennifer L. Christofferson, Eric P. Boorman, Larry J. Nelson

Faculty Publications

Although emerging adults are engaged in heightened levels of meaning-making (Barry and Abo-Zena (eds) in Emerging adults’ religiousness and spirituality: meaning-making in an age of transition. Oxford University Press, New York, 2014), research has focused on either religiousness or spirituality (R/S) in each study. While R/S individually have been associated with emerging adults’ psychological adjustment (Rew and Wong in J Adolesc Health 38:433–442, 2006), scholars have rarely explored the specific profiles of R/S adjustment. Thus, a diverse group of undergraduate students (N = 792; Mage = 19.61, SD= 1.86; 69% women) completed questionnaires online involving these constructs. Preliminary …

Classical Axisymmetric Gravity In Real Ashtekar Variables, Rodolfo Gambini, Esteban Mato, Javier Olmedo, Jorge Pullin

Faculty Publications

We formulate axisymmetric general relativity in terms of real Ashtekar-Barbero variables. We study the constraints and equations of motion and show how the Kerr, Schwarzschild and Minkowski solutions arise. We also discuss boundary conditions. This opens the possibility of a midisuperspace quantization using loop quantum gravity techniques for spacetimes with axial symmetry and time dependence.

Challenges For Natural Hydrogels In Tissue Engineering, Esmaiel Jabbari

Faculty Publications

Protein-based biopolymers derived from natural tissues possess a hierarchical structure in their native state. Strongly solvating, reducing and stabilizing agents, as well as heat, pressure, and enzymes are used to isolate protein-based biopolymers from their natural tissue, solubilize them in aqueous solution and convert them into injectable or preformed hydrogels for applications in tissue engineering and regenerative medicine. This review aims to highlight the need to investigate the nano-/micro-structure of hydrogels derived from the extracellular matrix proteins of natural tissues. Future work should focus on identifying the nature of secondary, tertiary, and higher order structure formation in protein-based hydrogels derived …

Challenges For Natural Hydrogels In Tissue Engineering, Esmaiel Jabbari

Faculty Publications

Protein-based biopolymers derived from natural tissues possess a hierarchical structure in their native state. Strongly solvating, reducing and stabilizing agents, as well as heat, pressure, and enzymes are used to isolate protein-based biopolymers from their natural tissue, solubilize them in aqueous solution and convert them into injectable or preformed hydrogels for applications in tissue engineering and regenerative medicine. This review aims to highlight the need to investigate the nano-/micro-structure of hydrogels derived from the extracellular matrix proteins of natural tissues. Future work should focus on identifying the nature of secondary, tertiary, and higher order structure formation in protein-based hydrogels derived …

Female Family Members Lack Understanding Of Indeterminate Negative Brca1/2 Test Results Shared By Probands, Deborah Himes, Deborah K. Gibbons, Wendy C. Birmingham, Renea L. Beckstrand, Amanda Gammon, Anita Y. Kinney, Margaret F. Clayton

Faculty Publications

Genetic test results have important implications for close family members. Indeterminate negative results are the most common outcome of BRCA1/2 mutation testing. Little is known about family members’ understanding of indeterminate negative BRCA1/2 test results. The purpose of this mixed-methods study was to investigate how daughters and sisters received and understood genetic test results as shared by their mothers or sisters. Participants included 81 women aged 40-74 with mothers or sisters previously diagnosed with breast cancer and who received indeterminate negative BRCA1/2 test results. Participants had never been diagnosed with breast cancer nor received their own genetic testing or counseling. …

Dietary Inflammatory Index And Odds Of Colorectal Cancer And Colorectal Adenomatous Polyps In A Case-Control Study From Iran, Pegah Rafiee, Nitin Shivappa, James R. Hébert, Saeede Jaafari Nasab, Alireza Bahrami, Azita Hekmatdoost, Bahram Rashidkhani, Amir Sadeghi, Mohammad Houshyari, Ehsan Hejazi

Faculty Publications

Background: Chronic inflammation is implicated in the development of colorectal cancer (CRC) and its precursor; colorectal adenomatous polyps (CAP). Some dietary factors are important triggers for systemic inflammation. Therefore, the present study aimed to investigate the association between the dietary inflammatory index (DII^®) and the risk of CRC and CAP in an Iranian case-control study. Methods: 134 newly diagnosed CRC patients, 130 newly diagnosed CAP patients, and 240 hospitalized controls were recruited using convenience sampling. Energy-adjusted DII (E-DII) scores were computed based on dietary intake assessed using a reproducible and valid 148-item food frequency questionnaire. Logistic regression models …

Hypermongone C Accelerates Wound Healing Through The Modulation Of Inflammatory Factors And Promotion Of Fibroblast Migration, Sara E. Moghadam, Moridi Mahdi Farimani, Sara Soroury, Samad N. Ebrahimi, Ehsan Jabbarzadeh

Faculty Publications

The physiology of wound healing is dependent on the crosstalk between inflammatory mediators and cellular components of skin regeneration including fibroblasts and endothelial cells. Therefore, strategies to promote healing must regulate this crosstalk to achieve maximum efficacy. In light of the remarkable potential of natural compounds to target multiple signaling mechanisms, this study aims to demonstrate the potential of hypermongone C, a polycyclic polyprenylated acylphloroglucinol (PPAP), to accelerate wound closure by concurrently enhancing fibroblast proliferation and migration, promoting angiogenesis, and suppressing pro-inflammatory cytokines. This compound belongs to a family of plants (Hypericum) that traditionally have been used to treat injuries. …

Contribution Of Maize Polyamine And Amino Acid Metabolism Toward Resistance Against Aspergillus Flavus Infection And Aflatoxin Production., Rajtilak Majumdar, Rakesh Minocha, Matthew D. Lebar, Kanniah Rajasekaran, Stephanie Long, Carol H. Carter-Wientjes, Subhash C. Minocha, Jeffrey W. Cary

Faculty Publications

Polyamines (PAs) are ubiquitous polycations found in plants and other organisms that are essential for growth, development, and resistance against abiotic and biotic stresses. The role of PAs in plant disease resistance depends on the relative abundance of higher PAs [spermidine (Spd), spermine (Spm)] vs. the diamine putrescine (Put) and PA catabolism. With respect to the pathogen, PAs are required to achieve successful pathogenesis of the host. Maize is an important food and feed crop, which is highly susceptible to Aspergillus flavus infection. Upon infection, the fungus produces carcinogenic aflatoxins and numerous other toxic secondary metabolites that adversely affect human …

Managing Agroecosystems For Soil Microbial Carbon Use Efficiency: Ecological Unknowns, Potential Outcomes, And A Path Forward, Cynthia M. Kallenbach, Matthew D. Wallenstein, Meagan E. Schipanksi, A. Stuart Grandy

Faculty Publications

Agricultural systems are increasingly managed for improving soil carbon (C) accumulation. However, there are limits to C returns in agricultural systems that constrain soil C accumulation capacity. Increasing the efficiency of how soil microbes process C is gaining interest as an important management strategy for increasing soil C and is a key feature of soil C dynamics in many new microbial-explicit models. A higher microbial C use efficiency (CUE) may increase C storage while reducing C system losses and is a fundamental trait affecting community assembly dynamics and nutrient cycling. However, the numerous ecological unknowns influencing CUE limit our ability …

Antimicrobial Stewardship: Staff Nurse Knowledge And Attitudes, Katreena Collette Merrill, Sandra Forsyth Hanson, Sharon Sumner, Todd Vento, John Veillette, Brandono Webb

Faculty Publications

Background: Registered nurses are uniquely qualified to augment antimicrobial stewardship (AS) processes. However, the role of nursing in AS needs further development. More information is needed regarding gaps in registered nurse knowledge, attitudes toward AS, and how infection preventionists can help.

Methods: An online descriptive survey was deployed to a convenience sample of approximately 2,000 nurses at the bedside. The survey included 15 questions addressing: (1) overall knowledge of AS; (2) antimicrobial delivery; (3) knowledge and attitudes regarding antimicrobial use; (4) antimicrobial resistance; and (5) antimicrobial resources and education.

Results: Three hundred sixteen staff nurses from 3 hospitals (15.8%) responded …

A New Magnetic Topological Quantum Material Candidate By Design, Weiwei Xie, Xin Gui

Faculty Publications

Magnetism, when combined with an unconventional electronic band structure, can give rise to forefront electronic properties such as the quantum anomalous Hall effect, axion electrodynamics, and Majorana fermions. Here we report the characterization of high-quality crystals of EuSn2P2, a new quantum material specifically designed to engender unconventional electronic states plus magnetism. EuSn2P2 has a layered, Bi2Te3-type structure. Ferromagnetic interactions dominate the Curie-Weiss susceptibility, but a transition to antiferromagnetic ordering occurs near 30 K. Neutron diffraction reveals that this is due to two-dimensional ferromagnetic spin alignment within individual Eu layers and antiferromagnetic alignment between layers-this magnetic state surrounds the Sn-P layers …

Tidal And Meteorological Influences On The Growth Of Invasive Spartina Alterniflora: Evidence From Uav Remote Sensing, Xudong Zhu, Lingxuan Meng, Yihui Zhang, Qihao Weng, James T. Morris

Faculty Publications

Rapid invasion of Spartina alterniflora into Chinese coastal wetlands has attracted much attention. Many field and remote sensing studies have examined the spatio-temporal dynamics of S. alterniflora invasion; however, spatially explicit quantitative analyses of S. alterniflora invasion and its underlying mechanisms at both patch and landscape scales are seldom reported. To fill this knowledge gap, we integrated multi-temporal unmanned aerial vehicle (UAV) imagery, light detection and ranging (LiDAR)-derived elevation data, and tidal and meteorological time series to explore the growth potential (lateral expansion rates and canopy greenness) of S. alterniflora over the intertidal zone in a subtropical coastal wetland (Zhangjiang …

Substrate Quality And Concentration Control Decomposition And Microbial Strategies In A Model Soil System, Jorg Schnecker, Timothy Bowles, Erik A. Hobbie, Richard G. Smith, A. Stuart Grandy

Faculty Publications

Soil carbon models typically scale decomposition linearly with soil carbon (C) concentration, but this linear relationship has not been experimentally verified. Here we investigated the underlying biogeochemical mechanisms controlling the relationships between soil C concentration and decomposition rates. We incubated a soil/sand mixture with increasing amounts of finely ground plant residue in the laboratory at constant temperature and moisture for 63 days. The plant residues were rye (Secale cereale, C/N ratio of 23) and wheat straw (Triticum spp., C/N ratio of 109) at seven soil C concentrations ranging from 0.38 to 2.99%. We measured soil respiration, dissolved organic carbon (DOC) …

Non-Canonical Amino Acid Labeling In Proteomics And Biotechnology, Aya M. Saleh, Kristen M. Wilding, Sarah Calve, Bradley Charles Bundy, Tamara L. Kinzer-Ursem

Faculty Publications

Metabolic labeling of proteins with non-canonical amino acids (ncAAs) provides unique bioorthogonal chemical groups during de novo synthesis by taking advantage of both endogenous and heterologous protein synthesis machineries. Labeled proteins can then be selectively conjugated to fluorophores, affinity reagents, peptides, polymers, nanoparticles or surfaces for a wide variety of downstream applications in proteomics and biotechnology. In this review, we focus on techniques in which proteins are residue- and site-specifically labeled with ncAAs containing bioorthogonal handles. These ncAA-labeled proteins are: readily enriched from cells and tissues for identification via mass spectrometry-based proteomic analysis; selectively purified for downstream biotechnology applications; or …