Digital Commons Network^™

Erratum: The Genome Sequence Of The Grape Phylloxera Provides Insights Into The Evolution, Adaptation, And Invasion Routes Of An Iconic Pest (Bmc Biology (2020) 18 (90) Doi: 10.1186/S12915-020-00820-5), Claude Rispe, Fabrice Legeai, Paul D. Nabity, Rosa Fernández, Arinder K. Arora, Patrice Baa-Puyoulet, Celeste R. Banfill, Leticia Bao, Miquel Barberà, Maryem Bouallègue, Anthony Bretaudeau, Jennifer A. Brisson, Federica Calevro, Pierre Capy, Olivier Catrice, Thomas Chertemps, Carole Couture, Laurent Delière, Angela E. Douglas, Keith Dufault-Thompson, Paula Escuer, Honglin Feng, Astrid Forneck, Toni Gabaldón, Roderic Guigó, Frédérique Hilliou, Silvia Hinojosa-Alvarez, Yi Min Hsiao, Sylvie Hudaverdian, Emmanuelle Jacquin-Joly, Edward B. James, Spencer Johnston, Benjamin Joubard

Faculty Publications

Following publication of the original article [1], the authors identified an error in Fig. 4. The error was made in the x-axis labels of the three panels, which were noted as “pairwise dN/dS”. The figure represents distributions of dS, so the labels were corrected as “pairwise dS”. The correct Fig. 4 is given below. (Figure Presented).

Obesity Worsens Gulf War Illness Symptom Persistence Pathology By Linking Altered Gut Microbiome Species To Long-Term Gastrointestinal, Hepatic, And Neuronal Inflammation In A Mouse Model, Dipro Bose, Punnag Saha, Ayan Mondal, Brian Fanelli, Ratanesh K. Seth, Patricia Janulewicz, Kimberly Sullivan, Stephen Lasley, Ronnie Horner, Rita R. Colwell, Ashok K. Shetty, Nancy Klimas, Saurabh Chatterjee

Faculty Publications

Persistence of Gulf War illness (GWI) pathology among deployed veterans is a clinical challenge even after almost three decades. Recent studies show a higher prevalence of obesity and metabolic disturbances among Gulf War veterans primarily due to the existence of post-traumatic stress disorder (PTSD), chronic fatigue, sedentary lifestyle, and consumption of a high-carbohydrate/high-fat diet. We test the hypothesis that obesity from a Western-style diet alters host gut microbial species and worsens gastrointestinal and neuroinflammatory symptom persistence. We used a 5 month Western diet feeding in mice that received prior Gulf War (GW) chemical exposure to mimic the home phase obese …

Machine Intelligence For Nerve Conduit Design And Production, Caleb E. Stewart, Chin Fung Kelvin Kan, Brody R. Stewart, Henry W. Sanicola Iii, Jangwook P. Jung, Olawale A. R. Sulaiman, Dadong Wang

Faculty Publications

Nerve guidance conduits (NGCs) have emerged from recent advances within tissue engineering as a promising alternative to autografts for peripheral nerve repair. NGCs are tubular structures with engineered biomaterials, which guide axonal regeneration from the injured proximal nerve to the distal stump. NGC design can synergistically combine multiple properties to enhance proliferation of stem and neuronal cells, improve nerve migration, attenuate inflammation and reduce scar tissue formation. The aim of most laboratories fabricating NGCs is the development of an automated process that incorporates patient-specific features and complex tissue blueprints (e.g. neurovascular conduit) that serve as the basis for more complicated …

A Statistical Impulse Response Model Based On Empirical Characterization Of Wireless Underground Channel, Abdul Salam, Mehmet C. Vuran, Suat Irmak

Faculty Publications

Wireless underground sensor networks (WUSNs) are becoming ubiquitous in many areas. The design of robust systems requires extensive understanding of the underground (UG) channel characteristics. In this paper, an UG channel impulse response is modeled and validated via extensive experiments in indoor and field testbed settings. The three distinct types of soils are selected with sand and clay contents ranging from $13\%$ to $86\%$ and $3\%$ to $32\%$, respectively. The impacts of changes in soil texture and soil moisture are investigated with more than $1,200$ measurements in a novel UG testbed that allows flexibility in soil moisture control. Moreover, the …

Family Matters: Decade Review From Journal Of Family And Economic Issues, Heather H. Kelly, Ashley B. Lebaron, E. Jeffery Hill

Faculty Publications

This article reviews research regarding economic influences on a variety of family matters published in Journal of Family and Economic Issues from 2010 to 2019. As finances permeate nearly every facet of everyday life, scholarly research related to finances and family issues has spanned a wide array of topics. We briefly review research focused on the following 11 areas related to finances and family matters: (a) family formation decisions, (b) gender and relational power in family finances and relationships, (c) finances and fathers, (d) finances and mothers, (e) finances and parenting, (f) finances and elderly family members, (g) finances and …

A Glance Of P53 Functions In Brain Development, Neural Stem Cells, And Brain Cancer, Yuqing Xiong, Yun Zhang, Shunbin Xiong, Abie E. Williams-Villalobo

Faculty Publications

p53 is one of the most intensively studied tumor suppressors. It transcriptionally regulates a broad range of genes to modulate a series of cellular events, including DNA damage repair, cell cycle arrest, senescence, apoptosis, ferroptosis, autophagy, and metabolic remodeling, which are fundamental for both development and cancer. This review discusses the role of p53 in brain development, neural stem cell regulation and the mechanisms of inactivating p53 in gliomas. p53 null or p53 mutant mice show female biased exencephaly, potentially due to X chromosome inactivation failure and/or hormone-related gene expression. Oxidative cellular status, increased PI3K/Akt signaling, elevated ID1, and metabolism …

The Identity Formation Process Of Immigrant Children: A Case Study Synthesis, Jose Carbajal

Faculty Publications

Introduction: Children who immigrate often have difficulties in adjusting to their host country. A single case study based on similar narratives is composed to develop the character of a child’s developmental cultural issues as he immigrated to the United States from El Salvador. Attachment theory is reviewed to discuss how detachment and re-attachment affected him. A review of the literature on assimilation and acculturation is also provided. Objectives: The author synthesizes the work experience with the population with migration history to illustrate how attachment and loss impact these individuals, through a composed case study illustrated through the experience of Ramni, …

Initial Establishment Success Of Five Forages In An East Texas Loblolly Pine (Pinus Taeda) Silvopasture, Michael Richard, Ken Farrish, Brian P. Oswald, Hans M. Williams, Michael Maurer

Faculty Publications

The establishment at the end of 1 year of five forages was evaluated in a loblolly pine (Pinus taeda L.) silvopasture system. The five forages were: ‘Pensacola” bahiagrass (Paspalum notatum Fluegge), “Texas Tough” bermudagrass (Cynodon dactylon L. Pers.), “Alamo” switchgrass (Panicum virgatum L.), “San Marcos” Eastern gamagrass (Tripsacum dactyloides L.), and a native mix containing 45% “Texas” little bluestem (Schizachyrium scoparium Michx Nash), 15% sand lovegrass (Eragrostis trichodes Nutt. L. Alph. Wood), 15% “Blackwell” switchgrass (Panicum virgatum L.), 10% “Lometa” indiangrass (Sorgastrum nutans L. Nash), 10% “Haskell” sideoats grama (Bouteloua …

The Life And Death And Consequences Of Canals And Spoil Banks In Salt Marshes, R. Eugene Turner, Erick M. Swenson

Faculty Publications

We describe the consequence and demise of levees (spoil banks) built from dredging canals in Louisiana salt marshes using morphometric measurements made over 30 years, soil collections on the spoil bank and in the salt marshes behind, and complementary observations from other areas. These measurements were used to determine the temporal bounds of how long spoil banks last and if salt marsh soils remaining in salt marshes are affected. If the rates of changes in spoil bank morphology continue, then the estimated life time of the shrub-tree vegetation at a representative spoil bank is 81 years, the spoil bank width …

Natural Environment And Childhood Obesity: A Systematic Review, Robert Rohli

Faculty Publications

No abstract provided.

No, You Go First: Phenotype And Social Context Affect House Sparrow Neophobia: Social Learning Can Persist In Sparrows, T. R. Kelly, M. G. Kimball, K. R. Stansberry, C. R. Lattin

Faculty Publications

© 2020 The Author(s). Novel object trials are commonly used to assess aversion to novelty (neophobia), and previous work has shown neophobia can be influenced by the social environment, but whether the altered behaviour persists afterwards (social learning) is largely unknown in wild animals. We assessed house sparrow (Passer domesticus) novel object responses before, during and after being paired with a conspecific of either similar or different behavioural phenotype. During paired trials, animals housed with a similar or more neophobic partner demonstrated an increased aversion to novel objects. This change did not persist a week after unpairing, but neophobia decreased …

Mechanisms Of Artemisia Scoparia’S Anti-Inflammatory Activity In Cultured Adipocytes, Macrophages, And Pancreatic Β-Cells, Anik Boudreau, Susan J. Burke, J. Jason Collier, Allison J. Richard, David M. Ribnicky, Jacqueline M. Stephens

Faculty Publications

© 2020 The Obesity Society Objective: An ethanolic extract of Artemisia scoparia (SCO) improves adipose tissue function and reduces negative metabolic consequences of high-fat feeding. A. scoparia has a long history of medicinal use across Asia and has anti-inflammatory effects in various cell types and disease models. The objective of the current study was to investigate SCO’s effects on inflammation in cells relevant to metabolic health. Methods: Inflammatory responses were assayed in cultured adipocytes, macrophages, and insulinoma cells by quantitative polymerase chain reaction, immunoblotting, and NF-κB reporter assays. Results: In tumor necrosis factor α–treated adipocytes, SCO mitigated ERK and NF-κB …

The Cdk Inhibitor Siamese Targets Both Cdka;1 And Cdkb1 Complexes To Establish Endoreplication In Trichomes1[Open], Kai Wang, Ruth W. Ndathe, Narender Kumar, Elizabeth A. Zeringue, Naohiro Kato, John C. Larkin

Faculty Publications

© 2020 American Society of Plant Biologists. All rights reserved. Endoreplication, also known as endoreduplication, is a modified cell cycle in which DNA is replicated without subsequent cell division. Endoreplication plays important roles in both normal plant development and in stress responses. The SIAMESE (SIM) gene of Arabidopsis (Arabidopsis thaliana) encodes a cyclin-dependent kinase (CDK) inhibitor that plays a central role in establishing endoreplication, and is the founding member of the SIAMESE-RELATED (SMR) family of plant-specific CDK inhibitor genes. However, there has been conflicting evidence regarding which specific cyclin/CDK complexes are inhibited by SIM in vivo. In this work, we …

Racial Disparities In Air Pollution Burden And Covid-19 Deaths In Louisiana, Usa, In The Context Of Long-Term Changes In Fine Particulate Pollution, Kimberly A. Terrell, Wesley James

Faculty Publications

Black Americans in Louisiana are disproportionately dying from COVID-19, and environmental disparities may be contributing to this injustice. While Black communities in Louisiana's industrialized regions (e.g., Cancer Alley, Calcasieu Parish) have been overburdened with pollution for decades, this disparity has not been evaluated by using recent data. Here, we explore statewide relationships among air pollution burden, race, COVID-19 death rates, and other health/socioeconomic factors. Measures of pollution burden included satellite-derived particulate matter (PM2.5) concentrations and health risks from toxic air pollution (i.e., respiratory hazard [RH] and immunological hazard [IH], estimated by the Environmental Protection Agency). In addition, we evaluate changes …

Effects Of Experimental Lightgaps And Topography On Enrichment Plantings In A Central Amazonian Secondary Forest, Tony Vizcarra Bentos, Henrique E. M. Nascimento, Marisangela Dos Anjos Marisangela, G. Bruce Williamson

Faculty Publications

Enrichment plantings into secondary forest are an important option in restoring species diversity and ecosystem services. However, little attention has been given to environmental requirements for species performance. This study evaluated the effects of lightgaps and topographic position on the growth and survival of four native tree species (Pouteria caimito, Garcinia macrophylla, Dipteryx odorata and Cynometra bauhiniaefolia) planted into a 26-year old secondary forest originating from abandoned pastures in the central Amazon Basin. Artificial lightgaps and control plots under closed canopy were uniformly distributed on plateaus and bottomlands near water bodies. Seedlings were planted randomly into the plots and monitored …

References To Children's Stories And Fairy Tales In Judicial Opinions And Written Advocacy, Douglas E. Abrams

Faculty Publications

Jones v. State is typical of recent state and federal court decisions that have spiced substantive or procedural points with references to classic children’s stories or classic fairy tales. These literary resources have won places in American popular culture and are likely generally familiar to readers, especially when (as in Jones) the court provides any necessary context explaining the resource’s relevance to the decision.

In previous Journal of The Missouri Bar articles, I have written about judges’ invocation of an array of influential cultural markers that are generally familiar to Americans. These articles explored written opinions that accompanied substantive or …

Complement In Reproductive White Adipose Tissue Characterizes The Obese Preeclamptic-Like Bph/5 Mouse Prior To And During Pregnancy, Kelsey N. Olson, Dorien Reijnders, Viviane C.L. Gomes, R. Caitlin Hebert, Chin Chi Liu, Jacqueline M. Stephens, Leanne M. Redman, Nataki C. Douglas, Jennifer L. Sones

Faculty Publications

© 2020 by the authors. Licensee MDPI, Basel, Switzerland. Preeclampsia (PE) is a serious hypertensive disorder of pregnancy characterized by abnormal placental development with an unknown etiology. To better understand which women will develop PE, a number of maternal risk factors have been identified, including obesity. Visceral white adipose tissue (WAT) contains inflammatory mediators that may contribute to PE. To explore this, we utilized the blood pressure high (BPH)/5 mouse model of superimposed PE that spontaneously recapitulates the maternal PE syndrome. We hypothesized that BPH/5 visceralWAT adjacent to the female reproductive tract (reproductiveWAT) is a source of complement factors that …

Fire As A Fundamental Ecological Process: Research Advances And Frontiers, Kendra K. Mclauchlan, Philip E. Higuera, Jessica Miesel, Brendan M. Rogers, Jennifer Schweitzer, Jacquelyn K. Shuman, Alan J. Tepley, J. Morgan Varner, Thomas T. Veblen, Solny A. Adalsteinsson, Jennifer K. Balch, Patrick Baker, Enric Batllori, Erica Bigio, Paulo Brando, Megan Cattau, Melissa L. Chipman, Janice Coen, Raelene Crandall, Lori Daniels, Neal Enright, Wendy S. Gross, Brian J. Harvey, Jeff A. Hatten, Sharon Hermann, Rebecca E. Hewitt, Leda N. Kobziar, Jennifer B. Landesmann, Michael M. Loranty, S. Yoshi Maezumi, Linda Mearns, Max Moritz, Jonathan A. Myers

Faculty Publications

© 2020 The Authors. Journal of Ecology published by John Wiley & Sons Ltd on behalf of British Ecological Society Fire is a powerful ecological and evolutionary force that regulates organismal traits, population sizes, species interactions, community composition, carbon and nutrient cycling and ecosystem function. It also presents a rapidly growing societal challenge, due to both increasingly destructive wildfires and fire exclusion in fire-dependent ecosystems. As an ecological process, fire integrates complex feedbacks among biological, social and geophysical processes, requiring coordination across several fields and scales of study. Here, we describe the diversity of ways in which fire operates as …

The Influence Of Stochasticity, Landscape Structure And Species Traits On Abundant–Centre Relationships, Tad A. Dallas, Luca Santini

Faculty Publications

© 2020 The Authors. Ecography published by John Wiley & Sons Ltd on behalf of Nordic Society Oikos Species have been commonly hypothesized to have high population densities in geographic areas which correspond to either the centre of the species geographic range or climatic niche (abundant–centre hypothesis). However, there is mixed empirical support for this relationship, and little theoretical underpinning. We simulate a species spreading across a set of replicated artificial landscapes to examine the expected level of support for abundant–centre relationships in geographic and niche space. Species niche constraints were modeled as a single axis which was related directly …

Identification Of Pathways Associated With Placental Adaptation To Maternal Nutrient Restriction In Sheep, Ashley K. Edwards, Kathrin A. Dunlap, Thomas E. Spencer, M. Carey Satterfield

Faculty Publications

Maternal nutrient restriction impairs placental growth and development, but available evidence suggests that adaptive mechanisms exist, in a subset of nutrient restricted (NR) ewes, that support normal fetal growth and do not result in intrauterine growth restriction (IUGR). This study utilized Affymetrix GeneChip Bovine and Ovine Genome 1.0 ST Arrays to identify novel placental genes associated with differential fetal growth rates within NR ewes. Singleton pregnancies were generated by embryo transfer and, beginning on Day 35 of pregnancy, ewes received either a 100% NRC (control-fed group; n = 7) or 50% NRC (NR group; n = 24) diet until necropsy …

Synergisms In Science: Climate Change And Integrated Pest Management Through The Lens Of Communication-2019 Student Debates, Jocelyn R. Holt, Lina Bernaola, Kadie E. Britt, Chirs Mccullough, Morgan Roth, Jennie Wagner, Max Ragozzino, Leslie Aviles, Zhilin Li, Forest Huval, Manoj Pandey, Benjamin W. Lee, Megan Asche, Abigail Hayes, Abigail Cohen, Adrian Marshall, Hannah E. Quellhorst, Rachel V. Wilkins, Valerie Nguyen, Jacqueline Maille, Rachel K. Skinner, John J. Ternest, Sarah Anderson, Scott W. Gula, Kayleigh Hauri, Julius Eason, Megan Mulcahy, Scott Lee, James Michael Villegas, Patricia Shorter

Faculty Publications

Every year, the Student Debates Subcommittee (SDS) of the Student Affairs Committee (SAC) for the annual Entomological Society of America (ESA) meeting organizes the Student Debates. This year, the SAC selected topics based on their synergistic effect or ability to ignite exponential positive change when addressed as a whole. For the 2019 Student Debates, the SAC SDS identified these topic areas for teams to debate and unbiased introduction speakers to address: 1) how to better communicate science to engage the public, particularly in the area of integrated pest management (IPM), 2) the influential impacts of climate change on agriculturally and …

Multiple Decrement Life Tables Of Cephus Cinctus Norton (Hymenoptera: Cephidae) Across A Set Of Barley Cultivars: The Importance Of Plant Defense Versus Cannibalism, Buddhi B. Achhami, Robert K.D. Peterson, Jamie D. Sherman, Gadi V.P. Reddy, David K. Weaver

Faculty Publications

Accurately estimating cause-specific mortality for immature insect herbivores is usually difficult. The insects are exposed to abiotic and biotic mortality factors, causing cadavers to simply disappear before cause of mortality can be recorded. Also, insect herbivores are often highly mobile on hosts, making it difficult to follow patterns for individuals through time. In contrast, the wheat stem sawfly, Cephus cinctus Norton, spends its entire egg, larval, and pupal period inside a host stem. Therefore, with periodic sampling stage-specific causes of mortality can be ascertained. Consequently, we examined C. cinctus mortality in eight barley, Hordeum vulgare L., cultivars in two locations …

Antixenosis, Antibiosis, And Potential Yield Compensatory Response In Barley Cultivars Exposed To Wheat Stem Sawfly (Hymenoptera: Cephidae) Under Field Conditions, Buddhi B. Achhami, Gadi V.P. Reddy, Jamie D. Sherman, Robert K.D. Peterson, David K. Weaver

Faculty Publications

Wheat stem sawfly, Cephus cinctus Norton, is an economically serious pest of cereals grown in North America. Barley cultivars were previously planted as resistant crops in rotations to manage C. cinctus, but due to increasing levels of injury to this crop, this is no longer a valid management tactic in Montana. Therefore, we aimed to understand antixenosis (behavioral preference), antibiosis (mortality), and potential yield compensation (increased productivity in response to stem injuries) in barley exposed to C. cinctus. We examined these traits in eight barley cultivars. Antixenosis was assessed by counting number of eggs per stem and antibiosis was assessed …

Restoring Pre-Industrial Co2 Levels While Achieving Sustainable Development Goals, Mark E. Capron, Jim R. Stewart, Antoine De Ramon N’Yeurt, Michael D. Chambers, Jang K. Kim, Charles Yarish, Anthony T. Jones, Reginald B. Blaylock, Scott C. James, Rae Fuhrman, Martin T. Sherman, Don Piper, Graham Harris, Mohammed A. Hasan

Faculty Publications

© 2020 by the authors. Unless humanity achieves United Nations Sustainable Development Goals (SDGs) by 2030 and restores the relatively stable climate of pre-industrial CO₂ levels (as early as 2140), species extinctions, starvation, drought/floods, and violence will exacerbate mass migrations. This paper presents conceptual designs and techno-economic analyses to calculate sustainable limits for growing high-protein seafood and macroalgae-for-biofuel. We review the availability of wet solid waste and outline the mass balance of carbon and plant nutrients passing through a hydrothermal liquefaction process. The paper reviews the availability of dry solid waste and dry biomass for bioenergy with CO_{2 …}

Unpacking The Decline In Food Waste Measured In Chinese Households From 1991 To 2009, Danyi Qi, John W. Apolzan, Ran Li, Brian E. Roe

Faculty Publications

© 2020 Elsevier B.V. Food waste reduction is an explicit goal for many countries, yet a paucity of high-quality primary measurements of food waste are available to inform policy. We analyze repeated physical measurements of discarded food from more than 37,000 households enrolled in the China Health and Nutrition Survey (CHNS) from 1991 to 2009 and describe relevant food waste patterns and trends within households over a period of dramatic change. Over a period in which average real household incomes tripled, food discarded per person declined by about 20% on a quantity basis and by about 40% on a Calorie …

Electronic-Cigarette Vehicles And Flavoring Affect Lung Function And Immune Responses In A Murine Model, Brittany N. Szafran, Rakeysha Pinkston, Zakia Perveen, Matthew K. Ross, Timothy Morgan, Daniel B. Paulsen, Arthur L. Penn, Barbara L. F. Kaplan, Alexandra Noel

Faculty Publications

The use of electronic nicotine delivery systems (ENDS), also known as electronic-cigarettes (e-cigs), has raised serious public health concerns, especially in light of the 2019 outbreak of e-cig or vaping product use-associated acute lung injury (EVALI). While these cases have mostly been linked to ENDS that contain vitamin E acetate, there is limited research that has focused on the chronic pulmonary effects of the delivery vehicles (i.e., without nicotine and flavoring). Thus, we investigated lung function and immune responses in a mouse model following exposure to the nearly ubiquitous e-cig delivery vehicles, vegetable glycerin (VG) and propylene glycol (PG), used …

Formation Of Tubular Carbonates Within The Seabed Of The Northern South China Sea, Yuedong Sun, Jörn Peckmann, Yu Hu, Xudong Wang, Shanggui Gong, Yongbo Peng, Duofu Chen, Dong Feng

Faculty Publications

© 2020 by the authors. Licensee MDPI, Basel, Switzerland. A remarkable exposure of tubular authigenic carbonates was found on the seafloor in the Dongsha area of the South China Sea (SCS). The tubular carbonates, around 2–3 cm in diameter and usually less than 10 cm in length, represent broken fragments of once-larger pipes that now protrude from muddy sediments. The morphology, carbon and oxygen stable isotope compositions, and trace and rare earth element contents of the carbonates were analyzed to decipher the mode of carbonate formation. The tubular carbonates exhibit a dark brown coating of iron and manganese hydrous oxides, …

Building Implementation Science In Nutrition, Andrea M. Warren, Edward A. Frongillo Jr., Rahul Rawat

Faculty Publications

The field of nutrition has been investing in the development of many nutrition-specific and -sensitive policies and programs aimed at improving population-level malnutrition in all its forms. When there is a need to learn about a new system, programmatic context, or target population to understand how to effectively deploy an intervention to help improve nutrition, it is important to be able to ask a broad range of questions, both in topic and in scope. Our aim is to provide a simple and conceptually clear definition and principles to elaborate the science of implementation for nutrition to distinguish it from other …

Behavioral Strategies During Incubation Influence Nest And Female Survival Of Wild Turkeys, Ashley K. Lohr, James A. Martin, Gregory T. Wann, Bradley S. Cohen, Bret A. Collier, Michael J. Chamberlain

Faculty Publications

Females must balance physiological and behavioral demands of producing offspring with associated expenditures, such as resource acquisition and predator avoidance. Nest success is an important parameter underlying avian population dynamics. Galliforms are particularly susceptible to low nest success due to exposure of ground nests to multiple predator guilds, lengthy incubation periods, and substantive reliance on crypsis for survival. Hence, it is plausible that nesting individuals prioritize productivity and survival differently, resulting in a gradient of reproductive strategies. Fine-scale movement patterns during incubation are not well documented in ground-nesting birds, and the influence of reproductive movements on survival is largely unknown. …

Phyr: Anrpackage For Phylogenetic Species-Distribution Modelling In Ecological Communities, Daijiang Li, Russell Dinnage, Lucas A. Nell, Matthew R. Helmus, Anthony Ives

Faculty Publications

Model-based approaches are increasingly popular in ecological studies. A good example of this trend is the use of joint species distribution models to ask questions about ecological communities. However, most current applications of model-based methods do not include phylogenies despite the well-known importance of phylogenetic relationships in shaping species distributions and community composition. In part, this is due to a lack of accessible tools allowing ecologists to fit phylogenetic species distribution models easily. To fill this gap, therpackagephyr(pronounced fire) implements a suite of metrics, comparative methods and mixed models that use phylogenies to understand and predict community composition and other …