Digital Commons Network^™

Identification Of Return-Oriented Programming Attacks Using Risc-V Instruction Trace Data, Daniel F. Koranek, Scott R. Graham, Brett J. Borghetti, Wayne C. Henry

Faculty Publications

An increasing number of embedded systems include dedicated neural hardware. To benefit from this specialized hardware, deep learning techniques to discover malware on embedded systems are needed. This effort evaluated candidate machine learning detection techniques for distinguishing exploited from non-exploited RISC-V program behavior using execution traces. We first developed a dataset of execution traces containing Return Oriented Programming (ROP) exploitation on the RISC-V Instruction Set Architecture (ISA) and then developed several deep learning bidirectional Long Short-Term Memory (LSTM) models capable of distinguishing exploited traces from non-exploited traces, each using subsets of features from the execution traces. An objective of this …

Pickle Associates With Histone Deacetylase 9 To Mediate Vegetative Phase Change In Arabidopsis, Tieqiang Hu, Darren Manuela, Valerie Hinsch, Mingli Xu

Faculty Publications

• The juvenile-to-adult vegetative phase change in flowering plants is mediated by a decrease in miR156 levels. Downregulation of MIR156A/MIR156C, the two major sources of miR156, is accompanied by a decrease in acetylation of histone 3 lysine 27 (H3K27ac) and an increase in trimethylation of H3K27 (H3K27me3) at MIR156A/MIR156C in Arabidopsis.

• Here, we show that histone deacetylase 9 (HDA9) is recruited to MIR156A/MIR156C during the juvenile phase and associates with the CHD3 chromatin remodeler PICKLE (PKL) to erase H3K27ac at MIR156A/MIR156C.

• H2Aub and H3K27me3 become enriched at MIR156A/MIR156C, and the recruitment of Polycomb Repressive Complex …

Recently Integrated Alu Elements In Capuchin Monkeys: A Resource For Cebus/Sapajus Genomics, J M. Storer, J A. Walker, C E. Rockwell, G Mores, J M. Storer, J D. Orkin, A D. Melin, K A. Phillips, C Roos, M A. Batzer

Faculty Publications

Capuchins are platyrrhines (monkeys found in the Americas) within the Cebidae family. For most of their taxonomic history, the two main morphological types of capuchins, gracile (untufted) and robust (tufted), were assigned to a single genus, Cebus. Further, all tufted capuchins were assigned to a single species, Cebus apella, despite broad geographic ranges spanning Central and northern South America. In 2012, tufted capuchins were assigned to their genus, Sapajus, with eight currently recognized species and five Cebus species, although these numbers are still under debate. Alu retrotransposons are a class of mobile element insertion (MEI) widely used to study primate …

Soil Volatile Organic Compound Emissions In Response To Soil Warming And Nitrogen Deposition, A. L. Romero-Olivares, C. L. Davie-Martin, M. Kramshoj, R. Rinnan, Serita D. Frey

Faculty Publications

Biogenic volatile organic compounds (VOCs) play crucial roles in ecosystems at multiple scales, ranging from mediating soil microbial interactions to contributing to atmospheric chemistry. However, soil VOCs and how they respond to environmental change remains understudied. We aimed to assess how 2 abiotic global change drivers, soil warming and simulated nitrogen (N) deposition, impact soil VOC emissions over time in a temperate forest. We characterized the effect of warming, N deposition, and their interaction on the composition and emissions of soil VOCs during the growing season of 2 consecutive years. We found that chronic warming and N deposition enhanced total …

High Level Of Persister Frequency In Clinical Staphylococcal Isolates, Sarita Manandhar, Anjana Singh, Ajit Varma, Shanti Pandey, Neeraj Shrivastava

Faculty Publications

Staphylococcus aureus is a notorious human pathogen that causes often lethal systemic conditions that are mostly medical device associated biofilm infections. Similarly, coagulase negative staphylococci are emerging as leading pathogen for nosocomial infections owing to their ability to form biofilm on implanted medical equipment. Chronic in nature, these infections are difficult to treat. Such recalcitrance of these infections is caused mainly due to the presence of persister cells, which exhibit transient yet extreme tolerance to antibiotics. Despite tremendous clinical significance, there is lack of studies on persister cells formation among clinical bacterial isolates. Considering the importance of factors influencing persister …

Attention/Deficit Hyperactivity Disorder In Adolescent And Young Adult Males With Fragile X Syndrome, Jessica Klusek, Shannon L. O'Connor, Alexandra Hickey, Kimberly J. Hills, Leonard Abbeduto, Jane E. Roberts

Faculty Publications

This study characterized the rates of rates of attention-deficit/hyperactivity disorder (ADHD) in adolescent and young adult males with fragile X syndrome (FXS) using a multi-method approach integrating a DSM-based parent interview (Children’s Interview for Psychiatric Syndromes; P-ChIPS, Fristad et al., 1998) and a parent rating scale (Child Behavior Checklist; CBCL, Achenbach, 2001). Thirty-one males with FXS, aged 16-24 years, participated. Forty-two percent met DSM-5 criteria for ADHD and 35% exceeded the CBCL cut-offs. Agreement between the two classification methods was fair (κ=0.38). Autism symptom severity and nonverbal cognitive ability did not predict ADHD diagnoses/symptoms. Results show …

Antiviral Polymers: A Review, Ali Akbari, Ashkan Bigham, Vahid Rahimkhoei, Sina Sharifi, Esmaiel Jabbari

Faculty Publications

Polymers, due to their high molecular weight, tunable architecture, functionality, and buffering effect for endosomal escape, possess unique properties as a carrier or prophylactic agent in preventing pandemic outbreak of new viruses. Polymers are used as a carrier to reduce the minimum required dose, bioavailability, and therapeutic effectiveness of antiviral agents. Polymers are also used as multifunctional nanomaterials to, directly or indirectly, inhibit viral infections. Multifunctional polymers can interact directly with envelope glycoproteins on the viral surface to block fusion and entry of the virus in the host cell. Polymers can indirectly mobilize the immune system by activating macrophages and …

Do We Trust The Government? Attributes Of Covid-19 Vaccine Hesitancy And Acceptance In Nigeria, Osmond C. Ekwebelem, Helen Onyeaka, Ismaeel Yunusa Ph. D., Taghi Miri, Yahwedalu M. Onwuneme, Ayeni T. Eunice, Amara Anyogu, Bright Obi, Ngwogu Ada Carol

Faculty Publications

Objectives:

A significant percentage of the population must be vaccinated to achieve herd immunity. Therefore the success of a vaccination program relies on the level of acceptance. This present study seeks to understand COVID-19 vaccine acceptance and hesitancy in Nigeria by assessing the public's willingness to get vaccinated.

Study design:

This is a population-based cross-sectional study. Data were derived through a structured online survey.

Methods:

A cross-sectional study was conducted among adult residents in Nigeria in March 2021 using a structured online questionnaire. The questionnaire surveyed participants' demographic characteristics and perception of COVID-19 and the COVID-19 vaccine. Descriptive statistics and …

Controls On Buffering And Coastal Acidification In A Temperate Estuary, Christopher W. Hunt, Joseph Salisbury, Douglas Vandemark

Faculty Publications

Estuaries may be uniquely susceptible to the combined acidification pressures of atmospherically driven ocean acidification (OA), biologically driven CO2 inputs from the estuary itself, and terrestrially derived freshwater inputs. This study utilized continuous measurements of total alkalinity (TA) and the partial pressure of carbon dioxide (pCO2) from the mouth of Great Bay, a temperate northeastern U.S. estuary, to examine the potential influences of endmember mixing and biogeochemical transformation upon estuary buffering capacity (β–H). Observations were collected hourly over 28 months representing all seasons between May 2016 and December 2019. Results indicated that endmember mixing explained most of the observed variability …

Integrated Nonmarital Property Rights, E. Gary Spitko

Faculty Publications

Nonmarital cohabitation has become a mainstream family structure in the United States. Yet, despite the increasing prevalence of nonmarital cohabitants, American family property law generally fails to support nonmarital couples. This inequality under the law disproportionately disadvantages persons of color, those with relatively less education, and couples with relatively fewer economic resources. This Article considers the post-Obergefell need for law reform to better support nonmarital families, examines the principles that should ground nonmarital property rights reform, and proposes a novel approach to nonmarital property rights that integrates the law of dissolution with the law of succession, unifies the law governing …

An Exploration Of How Biophilic Attributes On Campuses Might Support Student Connectedness To Nature, Others, And Self, Susana Alves, Gowri Betrabet Gulwadi, Pia Nilsson

Faculty Publications

University Campuses remain important settings for nurturing and supporting student health and quality of life (QoL). Research shows the health benefits of nature experiences may be facilitated by campus spaces and activities that afford connectedness. Connectedness to nature, others, and self may allow students to cope with mental fatigue, stress, and a constant need for restoration. Despite recent encouraging trends, we still lack an integrative conceptual framework to describe the mechanisms involved in achieving connectedness for making recommendations for campus design. In this conceptual review, we examine students’ connectedness in campus settings in relation to biophilic elements and attributes. We …

Interneuronal Network Model Of Theta-Nested Fast Oscillations Predicts Differential Effects Of Heterogeneity, Gap Junctions And Short Term Depression For Hyperpolarizing Versus Shunting Inhibition, Guillem Via, Fernando R. Fernandez, John A. White, Carmen C. Canavier

Faculty Publications

No abstract provided.

The Interplay Between Hydrogen Sulfide And Phytohormone Signaling Pathways Under Challenging Environments, Muhammad Saad Shoaib Khan, Faisal Islam, Yajin Ye, Matthew Ashline, Daowen Wang, Biying Zhao, Zheng Qing Fu, Jian Chen

Faculty Publications

Hydrogen sulfide (H₂S) serves as an important gaseous signaling molecule that is involved in intra- and intercellular signal transduction in plant–environment interactions. In plants, H₂S is formed in sulfate/cysteine reduction pathways. The activation of endogenous H₂S and its exogenous application has been found to be highly effective in ameliorating a wide variety of stress conditions in plants. The H₂S interferes with the cellular redox regulatory network and prevents the degradation of proteins from oxidative stress via post-translational modifications (PTMs). H₂S-mediated persulfidation allows the rapid response of proteins in signaling networks …

Thalamic Shape Abnormalities Differentially Relate To Cognitive Performance In Early-Onset And Adult-Onset Schizophrenia, Derin J. Cobia, Chaz Rich, Matthew J. Smith, Pedro Engel Gonzalez, Will Cronenwett, John G. Csernansky, Lei Wang

Faculty Publications

Early-onset schizophrenia (EOS) shares many biological and clinical features with adult-onset schizophrenia (AOS), but may represent a unique subgroup with greater susceptibility for disease onset and worsened symptomatology and progression, which could potentially derive from exaggerated neurodevelopmental abnormalities. Neurobiological explanations of schizophrenia have emphasized the involvement of deep-brain structures, particularly alterations of the thalamus, which have been linked to core features of the disorder. The aim of this study was to compare thalamic shape abnormalities between EOS and AOS subjects and determine whether unique behavioral profiles related to these differences. It was hypothesized abnormal thalamic shape would be observed in …

Materialsatlas.Org: A Materials Informatics Web App Platform For Materials Discovery And Survey Of State-Of-The-Art, Jianjun Hu, Stanislav Stefanov, Yuqi Song, Sadman Sadeed Omee, Steph-Yves Louis, Edirisuriya M.D. Siriwardane, Yong Zhao, Lai Wei

Faculty Publications

The availability and easy access of large-scale experimental and computational materials data have enabled the emergence of accelerated development of algorithms and models for materials property prediction, structure prediction, and generative design of materials. However, the lack of user-friendly materials informatics web servers has severely constrained the wide adoption of such tools in the daily practice of materials screening, tinkering, and design space exploration by materials scientists. Herein we first survey current materials informatics web apps and then propose and develop MaterialsAtlas.org, a web-based materials informatics toolbox for materials discovery, which includes a variety of routinely needed tools for exploratory …

Limited Opportunities And Numerous Barriers To Ocean Science Careers In Under-Resourced Nations, Tashiana Osborne, Charitha Pattiaratchi, Erin L. Meyer-Gutbrod

Faculty Publications

No abstract provided.

Lis1 And Ndel1 Regulate Axonal Trafficking Of Mitochondria In Mature Neurons, Jai P. Pandey, Liang Shi, Remi A. Brebion, Deanna S. Smith

Faculty Publications

Defective mitochondrial dynamics in axons have been linked to both developmental and late-onset neurological disorders. Axonal trafficking is in large part governed by the microtubule motors kinesin-1 and cytoplasmic dynein 1 (dynein). Dynein is the primary retrograde transport motor in axons, and mutations in dynein and many of its regulators also cause neurological diseases. Depletion of LIS1, famous for linking dynein deregulation to lissencephaly (smooth brain), in adult mice leads to severe neurological phenotypes, demonstrating post-developmental roles. LIS1 stimulates retrograde transport of acidic organelles in cultured adult rat dorsal root ganglion (DRG) axons but findings on its role in mitochondrial …

Mapping Yellow Fever Epidemics As A Potential Indicator Of The Historical Range Of Aedes Aegypti In The United States, Nicole S. Fijman, Donald A. Yee

Faculty Publications

Background: Yellow fever (YF) plagued the United States from the 1690s until 1905, resulting in thousands of deaths. Within the US, Aedes aegypti is the only YF vector and almost no data exists for the location of this species prior to the early 1900s.

Objectives: To determine the historical range of Ae. aegypti we examined the occurrence of YF epidemics across time and space. We hypothesized that historically Ae. aegypti was driven by human population density, like its contemporary range suggests.

Methods: To test this hypothesis, we compiled a list of YF cases in the US, human population density, location, …

In The Lab, Peter Lyons

Faculty Publications

No abstract provided.

Environment And Co-Occurring Native Mussel Species, But Not Host Genetics, Impact The Microbiome Of A Freshwater Invasive Species (Corbicula Fluminea), Marlène Chiarello, Jamie R. Bucholz, Mark Mccauley, Stephanie N. Vaughn, Garrett W. Hopper, Irene Sánchez González, Carla L. Atkinson, Jeffrey D. Lozier, Colin R. Jackson

Faculty Publications

The Asian clam Corbicula fluminea (Family: Cyneridae) has aggressively invaded freshwater habitats worldwide, resulting in dramatic ecological changes and declines of native bivalves such as freshwater mussels (Family: Unionidae), one of the most imperiled faunal groups. Despite increases in our knowledge of invasive C. fluminea biology, little is known of how intrinsic and extrinsic factors, including co-occurring native species, influence its microbiome. We investigated the gut bacterial microbiome across genetically differentiated populations of C. fluminea in the Tennessee and Mobile River Basins in the Southeastern United States and compared them to those of six co-occurring species of native freshwater mussels. …

Faster Intercalation Pseudocapacitance Enabled By Adjustable Amorphous Titania Where Tunable Isomorphic Architectures Reveal Accelerated Lithium Diffusivity, Wessel Van Den Bergh, Taylor Larison, Maximilliano Jesus Jara Fornerod, Prof. Stefan Guldin, Morgan Stefik

Faculty Publications

Intercalation pseudocapacitance is a faradaic electrochemical phenomenon with high power and energy densities, combining the attractive features of capacitors and batteries, respectively. Intercalation pseudocapacitive responses exhibit surface-limited kinetics by definition, without restriction from the collective of diffusion-based processes. The surface-limited threshold (SLT) corresponds to the maximum voltage sweep rate (vSLT) exhibiting a predominantly surface-limited current response prior to the onset of diffusion-limitations. Prior studies showed increased lithium diffusivity for amorphous titania compared to anatase. Going beyond prior binary comparisons, here a continuum of amorphous titania configurations were prepared using a series of calcination temperatures to tailor both amorphous …

Economic Values Of Potential Regulation Changes For The Southern Flounder Fishery In Louisiana, David R. Smith, Stephen R. Midway, Rex H. Caffey, Jerrod M. Penn

Faculty Publications

No abstract provided.

Development And Structural Organization Of Mexico’S Mangrove Monitoring System (Smmm) As A Foundation For Conservation And Restoration Initiatives: A Hierarchical Approach, María Teresa Rodríguez-Zúñiga, Carlos Troche-Souza, María Isabel Cruz-López, Victor H. Rivera-Monroy

Faculty Publications

Mangroves provide ecosystem services worth billions of dollars worldwide. Although countries with extensive mangrove areas implemented management and conservation programs since the 1980s, the global area is still decreasing. To recuperate this lost area, both restoration and rehabilitation (R/R) projects have been implemented but with limited success, especially at spatial scales needed to restore functional properties. Monitoring mangroves at different spatial scales in the long term (decades) is critical to detect potential threats and select cost-effective management criteria and performance measures to improve R/R program success. Here, we analyze the origin, development, implementation, and outcomes of a country-level mangrove monitoring …

Waking Up To Sleep’S Role In Obesity And Blood Pressure Among Black Adolescent Girls In Low-Income, Us Urban Communities: A Longitudinal Analysis, Angela Cristina Bizzotto Trude, Bridget Armstrong Ph.D., Adrina Kramer Fiala Machado Ph.D., Emerson M. Wickwire, Lauren B. Covington, Yan Wang, Erin Hager, Maureen M. Black

Faculty Publications

Objective

To identify longitudinal bidirectional associations between unique sleep trajectories and obesity and hypertension among Black, adolescent girls.

Design, setting, and participants

Longitudinal data were from a randomized controlled trial (2009-2013) implemented in schools serving low-income communities aimed at preventing obesity among adolescent girls (mean age = 12.2 years (standard deviation ± 0.72).

Measures

Nocturnal sleep data were extracted from accelerometers at T1 (enrollment, n = 470), T2 (6-month, n = 348), and T3 (18-month follow-up, n = 277); height and weight were measured at T1-T3; and systolic/diastolic blood pressure at T1 and T3 using an oscillometric monitor. Multilevel models …

Molecular Characterization And Expression Variation Of The Odorant Receptor Co-Receptor In The Formosan Subterranean Termite, Paula Castillo, Claudia Husseneder, Qian Sun

Faculty Publications

Subterranean termites live in underground colonies with a division of labor among castes (i.e., queens and kings, workers, and soldiers). The function of social colonies relies on sophisticated chemical communication. Olfaction, the sense of smell from food, pathogens, and colony members, plays an important role in their social life. Olfactory plasticity in insects can be induced by long- and short-term environmental perturbations, allowing adaptive responses to the chemical environment according to their physiological and behavioral state. However, there is a paucity of information on the molecular basis of olfaction in termites. In this study, we identified an ortholog encoding the …

Phyllachora Species Infecting Maize And Other Grass Species In The Americas Represents A Complex Of Closely Related Species, Kirk Broders, Gloria Iriarte-Broders, Gary C. Bergstrom, Emmanuel Byamukama, Martin Chilvers, Christian Cruz, Felipe Dalla-Lana, Zachary Duray, Dean Malvick, Daren Mueller, Pierce Paul, Diane Plewa, Richard Raid, Alison E. Robertson, Catalina Salgado-Salazar, Damon Smith, Darcy Telenko, Katherine Vanetten, Nathan M. Kleczewski

Faculty Publications

The genus Phyllachora contains numerous obligate fungal parasites that produce raised, melanized structures called stromata on their plant hosts referred to as tar spot. Members of this genus are known to infect many grass species but generally do not cause significant damage or defoliation, with the exception of P. maydis which has emerged as an important pathogen of maize throughout the Americas, but the origin of this pathogen remains unknown. To date, species designations for Phyllachora have been based on host associations and morphology, and most species are assumed to be host specific. We assessed the sequence diversity of 186 …

A Nondestructive Method Of Calculating The Wing Area Of Insects, Kexin Yu, Gadi V.P. Reddy, Julian Schrader, Xuchen Guo, Yirong Li, Yabing Jiao, Peijian Shi

Faculty Publications

Most insects engage in winged flight. Wing loading, that is, the ratio of body mass to total wing area, has been demonstrated to reflect flight maneuverability. High maneuverability is an important survival trait, allowing insects to escape natural enemies and to compete for mates. In some ecological field experiments, there is a need to calculate the wing area of insects without killing them. However, fast, nondestructive estimation of wing area for insects is not available based on past work. The Montgomery equation (ME), which assumes a proportional relationship between leaf area and the product of leaf length and width, is …

Resistance Allele Frequency To Cry1ab And Vip3aa20 In Helicoverpa Zea (Boddie) (Lepidoptera: Noctuidae) In Louisiana And Three Other Southeastern U.S. States, Shucong Lin, Isaac Oyediran, Ying Niu, Sebe Brown, Don Cook, Xinzhi Ni, Yan Zhang, Francis P.F. Reay-Jones, Jeng Shong Chen, Zhimou Wen, Marcelo Dimase, Fangneng Huang

Faculty Publications

The corn earworm/bollworm, Helicoverpa zea (Boddie), is a pest species that is targeted by both Bacillus thuringiensis (Bt) maize and cotton in the United States. Cry1Ab and Vip3Aa20 are two common Bt toxins that are expressed in transgenic maize. The objective of this study was to determine the resistance allele frequency (RAF) to Cry1Ab and Vip3Aa20 in H. zea populations that were collected during 2018 and 2019 from four southeastern U.S. states: Louisiana, Mississippi, Georgia, and South Carolina. By using a group-mating approach, 104 F2 iso-lines of H. zea were established from field collections with most iso-lines (85) from Louisiana. …

Wetlands In China: Evolution, Carbon Sequestrations And Services, Threats, And Preservation/Restoration, Siyuan Ye, Lixin Pei, Lei He, Liujuan Xie, Guangming Zhao, Hongming Yuan, Xigui Ding, Shaofeng Pei, Shixiong Yang, Xue Li, Edward Laws

Faculty Publications

No abstract provided.

Wetlands In China: Evolution, Carbon Sequestrations And Services, Threats, And Preservation/Restoration, Siyuan Ye, Lixin Pei, Lei He, Liujuan Xie, Guangming Zhao, Hongming Yuan, Xigui Ding, Shaofeng Pei, Shixiong Yang, Xue Li, Edward Laws

Faculty Publications

No abstract provided.