Digital Commons Network^™

Capturing Wheat Phenotypes At The Genome Level, Babar Hussain, Bala A. Akpınar, Michael Alaux, Ahmed M. Algharib, Deepmala Sehgal, Zulfiqar Ali, Gudbjorg I. Aradottir, Jacqueline Batley, Arnaud Bellec, Alison R. Bentley, Halise B. Cagirici, Luigi Cattivelli, Fred Choulet, James Cockram, Francesca Desiderio, Pierre Devaux, Munevver Dogramaci, Gabriel Dorado, Susanne Dreisigacker, David Edwards, Khaoula El-Hassouni, Kellye Eversole, Tzion Fahima, Melania Figueroa, Sergio Gálvez, Kulvinder S. Gill, Liubov Govta, Alvina Gul, Goetz Hensel, Pilar Hernandez, Leonardo Abdiel Crespo-Herrera, Amir Ibrahim, Benjamin Kilian

Faculty Publications

Recent technological advances in next-generation sequencing (NGS) technologies have dramatically reduced the cost of DNA sequencing, allowing species with large and complex genomes to be sequenced. Although bread wheat (Triticum aestivum L.) is one of the world’s most important food crops, efficient exploitation of molecular marker-assisted breeding approaches has lagged behind that achieved in other crop species, due to its large polyploid genome. However, an international public–private effort spanning 9 years reported over 65% draft genome of bread wheat in 2014, and finally, after more than a decade culminated in the release of a gold-standard, fully annotated reference wheat-genome assembly …

Natural Products Inhibitors Of Monoamine Oxidases—Potential New Drug Leads For Neuroprotection, Neurological Disorders, And Neuroblastoma, Narayan D. Chaurasiya, Francisco León Ph.D., Ilias Muhammad, Babu L. Tekwani

Faculty Publications

Monoamine oxidase inhibitors (MAOIs) are an important class of drugs prescribed for treatment of depression and other neurological disorders. Evidence has suggested that patients with atypical depression preferentially respond to natural product MAOIs. This review presents a comprehensive survey of the natural products, predominantly from plant sources, as potential new MAOI drug leads. The psychoactive properties of several traditionally used plants and herbal formulations were attributed to their MAOI constituents. MAO inhibitory constituents may also be responsible for neuroprotective effects of natural products. Different classes of MAOIs were identified from the natural product sources with non-selective as well as selective …

Influence Of Guideline Operationalization On Youth Activity Prevalence In The International Children’S Accelerometry Database, Catherine Gammon, Andrew J. Atkin, Kirsten Corder, Ulf Ekelund, Bjorge Herman Hansen, Lauren B. Sherar, Lars Bo Anderson, Sigmund Anderssen, Rachel Davey, Pedro C. Hallal, Russell Jago, Susi Kriemler, Peter Lund Kristensen, Soyang Kwon, Kate Nothstone, Russell R. Pate Ph.D., J. O. Salmon, Luis B. Sardinha, Esther M.F. Sluijs

Faculty Publications

Introduction

The United Kingdom and World Health Organization recently changed their youth physical activity (PA) guidelines from 60 min of moderate- to vigorous-intensity PA (MVPA) every day, to an average of 60 min of MVPA per day, over a week. The changes are based on expert opinion due to insufficient evidence comparing health outcomes associated with different guideline definitions. This study used the International Children’s Accelerometry Database to compare approaches to calculating youth PA compliance and associations with health indicators.

Methods

Cross-sectional accelerometer data (n = 21,612, 5–18 yr) were used to examine compliance with four guideline definitions: daily …

Acylsugars Protect Nicotiana Benthamiana Against Insect Herbivory And Desiccation, Honglin Feng, Lucia Acosta-Gamboa, Lars H. Kruse, Jake D. Tracy, Seung Ho Chung, Alba Ruth Nava Fereira, Sara Shakir, Hongxing Xu, Garry Sunter, Michael A. Gore, Clare L. Casteel, Gaurav D. Moghe, Georg Jander

Faculty Publications

Key message: Nicotiana benthamiana acylsugar acyltransferase (ASAT) is required for protection against desiccation and insect herbivory. Knockout mutations provide a new resource for investigation of plant-aphid and plant-whitefly interactions. Abstract: Nicotiana benthamiana is used extensively as a transient expression platform for functional analysis of genes from other species. Acylsugars, which are produced in the trichomes, are a hypothesized cause of the relatively high insect resistance that is observed in N. benthamiana. We characterized the N. benthamiana acylsugar profile, bioinformatically identified two acylsugar acyltransferase genes, ASAT1 and ASAT2, and used CRISPR/Cas9 mutagenesis to produce acylsugar-deficient plants for investigation of insect resistance …

Ethnic Discrimination And Alcohol-Related Problem Severity Among Hispanic/Latin Drinkers: The Role Of Social Anxiety In The Minority Stress Model, Julia D. Buckner, Elizabeth M. Lewis, Justin M. Shepherd, Michael J. Zvolensky

Faculty Publications

Introduction: Hispanic/Latin individuals in the U.S. experience many health disparities, including worse alcohol-related outcomes. Thus, identifying psycho-sociocultural factors that may play a role in alcohol-related problems among these individuals is vital to informing prevention and treatment efforts. Minority stress-based models of alcohol misuse posit that some Hispanic/Latin individuals may drink (and continue to drink despite drinking-related problems) to alleviate negative affect associated with experiencing ethnic discrimination. Yet, little research has directly tested this hypothesis. Given the social nature of both ethnic discrimination and drinking, it follows that experiencing more ethnic discrimination could be related to greater social anxiety and some …

From Soils To Streams: Connecting Terrestrial Carbon Transformation, Chemical Weathering, And Solute Export Across Hydrological Regimes, Hang Wen, Pamela L. Sullivan, Sharon A. Billings, Hoori Ajami, Alejandro Cueva, Alejandro Flores, Daniel R. Hirmas, Aaron N. Koop, Katie Murenbeeld, Xi Zhang, Li Li

Faculty Publications

Soil biota generates carbon that exports vertically to the atmosphere (CO2) and transports laterally to streams and rivers (dissolved organic and inorganic carbon, DOC and DIC). These processes, together with chemical weathering, vary with flow paths across hydrological regimes; yet an integrated understanding of these interactive processes is still lacking. Here we ask: How and to what extent do subsurface carbon transformation, chemical weathering, and solute export differ across hydrological and subsurface structure regimes? We address this question using a hillslope reactive transport model calibrated using soil CO2 and water chemistry data from Fitch, a temperate forest at the ecotone …

The Perfect Storm? Covid-19 And Substance Use Amongst Social Work Students In The Usa, Youn Kyoung Kim, Sung Seek Moon, Mansoo Yu, Mee Young Um, Arati Maleku, Omoshola Kehinde, David Pooler

Faculty Publications

During the COVID-19 pandemic, health risk behaviours related to substance use have been recognised as a significant public health concern amongst university students. Understanding the mechanisms of substance use behaviours, including those used to cope with COVID-19-related stressors, is imperative to curate targeted prevention efforts. To that end, we examined substance use prevalence and its associations with socio-demographic characteristics, preventive behaviours, and mental health amongst US social work students. We collected data from 457 students across all degree levels (BSW, MSW and PhD) from July to August 2020 through an online survey, to examine thirty-day patterns of substance use behaviours …

Edwardsiella Ictaluri T3ss Effector Esen Modulates Expression Of Host Genes Involved In The Immune Response, Lidiya P. Dubytska, Ranjan Koirala, Azhia Sanchez, Ronald Thune

Faculty Publications

The type III secretion system (T3SS) effector EseN is encoded on the Edwardsiella ictaluri chromosome and is homologous to a family of T3SS effector proteins with phosphothreonine lyase activity. Previously we demonstrated that E. ictaluri invasion activates extracellular signal-regulated kinases 1 and 2 (ERK1/2) early in the infection, which are subsequently inactivated by EseN. Com-parative transcriptomic analysis showed a total of 753 significant differentially expressed genes in head-kidney-derived macrophages (HKDM) infected with an EseN mutant (∆EseN) compared to HKDM infected with wild-type (WT) strains. This data strongly indicates classical activation of macrophages (the M1 phenotype) in response to E. ictaluri …

Low-Light Shadow Imaging Using Quadrature-Noise Detection With A Camera, Savannah L. Cuozzo, Pratik J. Barge, Nikunjkumar Prajapati, Narayan Bhusal, Hwang Lee, Lior Cohen, Irina Novikova, Eugeniy E. Mikhailov

Faculty Publications

This paper experimentally demonstrates an imaging technique based on quadrature noise modification after interaction with an opaque object. By using a homodyne-like detection scheme, the detrimental effect of the camera dark noise is eliminated, making this approach particularly attractive for imaging scenarios which require weak illumination. As an example, the image of an object illuminated with a squeezed vacuum is reconstructed using a total of 800 probing photons, utilizing less than one photon per frame on average.

Conditional Quantum Plasmonic Sensing, Fatemeh Mostafavi, Zeinab Jafari, Michelle L.J. Lollie, Chenglong You, Israel De Leon, Omar S. Magaña-Loaiza

Faculty Publications

The possibility of using weak optical signals to perform sensing of delicate samples constitutes one of the main goals of quantum photonic sensing. Furthermore, the nanoscale confinement of electromagnetic near fields in photonic platforms through surface plasmon polaritons has motivated the development of highly sensitive quantum plasmonic sensors. Despite the enormous potential of plasmonic platforms for sensing, this class of sensors is ultimately limited by the quantum statistical fluctuations of surface plasmons. Indeed, the fluctuations of the electromagnetic field severely limit the performance of quantum plasmonic sensing platforms in which delicate samples are characterized using weak near-field signals. Furthermore, the …

The Dual Nature Of The Nucleolus, Alan Tartakoff, Patrick Dimario, Eduard Hurt, Brian Mcstay, Vikram Govind Panse, David Tollervey

Faculty Publications

The nucleolus is best known for housing the highly ordered assembly line that produces ribosomal subunits. The >100 ribosome assembly factors in the nucleolus are thought to cycle between two states: an operative state (when integrated into subunit assembly intermediates) and a latent state (upon release from intermediates). Although it has become commonplace to refer to the nucleolus as “being a multilayered condensate,” and this may be accurate for latent factors, there is little reason to think that such assertions pertain to the operative state of assembly factors.

Mitochondrial Dna And Other Lines Of Evidence Clarify Species Diversity In The Peromyscus Truei Species Group (Cricetidae: Neotominae), Giovani Hernández-Canchola, Livia León-Paniagua, Jacob A. Esselstyn

Faculty Publications

Deer mice (genus Peromyscus) are among the commonest small mammals in the Nearctic zoogeographic region. Nevertheless, systematic relationships are only partially settled and numerous taxonomic questions await resolution. For instance, researchers have found that some members of the Peromyscus truei species group contain high levels of genetic divergence that could indicate the presence of cryptic species. We analyzed the systematics and phylogenetic relationships of the P. truei group using new and previously published mitochondrial cytochrome b sequences. Our analyses verify several earlier conclusions, but we also detected new clades that deserve recognition. Considering their mitochondrial distinctiveness, allopatric ranges, and previously …

Planetary-Scale Change To The Biosphere Signalled By Global Species Translocations Can Be Used To Identify The Anthropocene, Mark Williams, Reinhold Leinfelder, Anthony D. Barnosky, Martin J. Head, Francine M.G. Mccarthy, Alejandro Cearreta, Stephen Himson, Rachael Holmes, Colin N. Waters, Jan Zalasiewicz, Simon Turner, Mary Mcgann, Elizabeth A. Hadly, M. Allison Stegner, Paul Michael Pilkington, Jérôme Kaiser, Juan Carlos Berrio, Ian P. Wilkinson, Jens Zinke, Kristine L. Delong

Faculty Publications

We examine three distinctive biostratigraphic signatures of humans associated with hunting and gathering, landscape domestication and globalization. All three signatures have significant fossil records of regional importance that can be correlated inter-regionally and help describe the developing pattern of human expansion and appropriation of resources. While none have individual first or last appearances that provide a globally isochronous marker, all three signatures overlap stratigraphically, in that they are part of a continuum of change, with complex regional patterns. Here we show that during the later stages of globalization, late nineteenth to twentieth century records of species translocations can be used …

The Role Of Motivation In The Conceptual Model Of Motor Development In Childhood, Cristina Menescardi, An V. De Meester, Sofie Morbee, Leen Haerens, Isaac Estevan

Faculty Publications

The aim of this study was twofold: first, to investigate whether perceived motor competence (PMC) mediates the relation between actual motor competence (AMC) and physical activity (PA) according to the conceptual model of motor development, and second to examine the role of different motivational regulations (i.e., intrinsic, identified, introjected, and external regulation) in the relationship between PMC and PA. A sample of 504 Spanish students (46.2% girls, 8–12 years old) voluntarily participated in this study. In relation to the first aim, structural equation modeling revealed that PMC indeed mediates the association between AMC and PA. In relation to the second …

Better Colloidal Lithography: Tilt-Rotate Evaporation Overcomes The Limits Of Plasma Etching, Macayla J. Caso, Michael G. Benton, Kevin M. Mcpeak

Faculty Publications

Colloidal lithography (CL) is a promising method for large-area fabrication of nanohole and nanodot arrays with applications in optical biosensing, separations, and magnetic data storage. However, reducing the diameter of the polystyrene sphere mask by plasma etching unavoidably increases their coefficient of variation (CV) and deforms their shape, thereby limiting the pitch-to-hole-diameter ratio of the resulting nanohole array to less than 3:1 and the minimum hole size to 200 nm with a 10% or better CV. We show that tilt-rotate evaporation colloidal lithography (TRE-CL) breaks the trade-off between hole diameter and polydispersity by leveraging glancing angle evaporation, not plasma etching, …

Modeling A Decision Support System For Covid-19 Using Systems Dynamics And Fuzzy Inference, Vinayaka Gude

Faculty Publications

Covid-19 has impacted the lives of people across the world with deaths and unprecedented economic damage. Countries have employed various restrictions and lockdowns to slow down the rate of its spread with varying degrees of success. This research aims to propose an optimal strategy for dealing with a pandemic taking the deaths and economy into account. A complete lockdown until vaccination is not suitable as it can destroy the economy, whereas having no restrictions would result in more Covid-19 cases. Therefore, there is a need for a dynamic model which can propose a suitable strategy depending on the economic and …

Normalizing Reproductive Genetic Innovation, Myrisha S. Lewis

Faculty Publications

Many societally accepted techniques were quite controversial at inception and for decades after. For example, historically, dialysis was “unnatural,” vaccination was “the poisoned quill,” and artificial insemination was akin to adultery. Despite social and cultural hurdles, the aforementioned medical techniques have today attained overall public acceptance, permissive legal treatment, and even health insurance coverage in some cases.

Unlike many now-routine treatments like in vitro fertilization (IVF), egg freezing, and organ transplantation, which flourished without significant governmental intervention, today’s controversial medical treatments, especially those involving reproductive genetic innovation, face intense regulatory barriers. Reproductive genetic innovation, which is the combination of IVF …

Biometrics And An Ai Bill Of Rights, Margaret Hu

Faculty Publications

This Article contends that an informed discussion on an AI Bill of Rights requires grappling with biometric data collection and its integration into emerging AI systems. Biometric AI systems serve a wide range of governmental purposes, including policing, border security and immigration enforcement, and biometric cyberintelligence and biometric-enabled warfare. These systems are increasingly categorized as "high-risk" when deployed in ways that may impact fundamental constitutional rights and human rights. There is growing recognition that high-risk biometric AI systems, such as facial recognition identification, can pose unprecedented challenges to criminal procedure rights. This Article concludes that a failure to recognize these …

Correlates Of Zero-Dose Vaccination Status Among Children Aged 12–59 Months In Sub-Saharan Africa: A Multilevel Analysis Of Individual And Contextual Factors, Chamberline E. Ozigbu, Bankole Olatosi Ph.D., Zhenlong Li, James W. Hardin, Nicole L. Hair

Faculty Publications

Despite ongoing efforts to improve childhood vaccination coverage, including in hard-to-reach and hard-to-vaccinate communities, many children in sub-Saharan Africa (SSA) remain unvaccinated. Considering recent goals set by the Immunization Agenda 2030 (IA2030), including reducing the number of zero-dose children by half, research that goes beyond coverage to identify populations and groups at greater risk of being unvaccinated is urgently needed. This is a pooled cross-sectional study of individual- and country-level data obtained from Demographic and Health Surveys Program and two open data repositories. The sample includes 43,131 children aged 12–59 months sampled between 2010 and 2020 in 33 SSA countries. …

Correlates Of Zero-Dose Vaccination Status Among Children Aged 12-59 Months In Sub-Saharan Africa: A Multilevel Analysis Of Individual And Contextual Factors, Chamberline Ozigbu, Bankole Olatosi, Zhenlong Li, James W. Hardin, Nicole L. Hair

Faculty Publications

Despite ongoing efforts to improve childhood vaccination coverage, including in hard-to-reach and hard-to-vaccinate communities, many children in sub-Saharan Africa (SSA) remain unvaccinated. Considering recent goals set by the Immunization Agenda 2030 (IA2030), including reducing the number of zero-dose children by half, research that goes beyond coverage to identify populations and groups at greater risk of being unvaccinated is urgently needed. This is a pooled cross-sectional study of individual- and country-level data obtained from Demographic and Health Surveys Program and two open data repositories. The sample includes 43,131 children aged 12–59 months sampled between 2010 and 2020 in 33 SSA countries. …

We Must Stop Fossil Fuel Emissions To Protect Permafrost Ecosystems, Benjamin W. Abbott, Michael Brown, Joanna C. Carey, Jessica G. Ernakovich, Jennifer M. Frederick, Laodong Guo, Gustaf Hugelius, Raymond M. Lee, Michael M. Loranty, Robie Macdonald, Paul J. Mann, Susan M. Natali, David Olefeldt, Pam Pearson, Abigail Rec, Martin Robards, Verity G. Salmon, Sara Sayedi, Christina Schadel, Edward A. G. Schuur, Sarah Shakil, Arial J. Shogren, Jens Strauss, Suzanne E. Tank, Brett F. Thornton, Rachael Treharne, Merritt Turetsky, Carolina Voigt, Nancy Wright, Yuanhe Yang, Jay P. Zarnetske, Qiwen Zhang, Scott Zolkos

Faculty Publications

Climate change is an existential threat to the vast global permafrost domain. The diverse human cultures, ecological communities, and biogeochemical cycles of this tenth of the planet depend on the persistence of frozen conditions. The complexity, immensity, and remoteness of permafrost ecosystems make it difficult to grasp how quickly things are changing and what can be done about it. Here, we summarize terrestrial and marine changes in the permafrost domain with an eye toward global policy. While many questions remain, we know that continued fossil fuel burning is incompatible with the continued existence of the permafrost domain as we know …

Inhibitory Control Of Emotional Interference In Deaf Children: Evidence From Event-Related Potentials And Event-Related Spectral Perturbation Analysis, Qiong Chen, Junfeng Zhao, Huang Gu, Xiaoming Li Ph.D.

Faculty Publications

Background: Impairment of interference control ability may reflect a more general deficit in executive functioning, and lead to an increase in internal-externalized problems such as impulsivity, which has been reported in deaf children. However, few researches have examined the neural mechanism of this impairment.

Methods: This study applied the electroencephalogram (EEG) technique to investigate the interference control ability in 31 deaf children and 28 hearing controls with emotional face-word stroop task.

Results: Results from behavioral task showed that deaf children exhibited lower accuracy compared to hearing controls. As for EEG analysis, reduced activation of ERP components in N1 and enhanced …

Adolescent Health Risk Behaviors, Adverse Experiences, And Self-Reported Hunger: Analysis Of 10 States From The 2019 Youth Risk Behavior Surveys, Kathryn L. Krupsky, Sarah Silwa, Hilary Seligman, Andrea D. Brown, Angela D. Liese Ph.D., Zewditu Demissie, Ellen Barnidge

Faculty Publications

We examined associations between adolescent self-reported hunger, health risk behaviors, and adverse experiences during the 2018–2019 school year. Youth Risk Behavior Survey data were pooled from 10 states. Prevalence ratios were calculated, and we assessed effect measure modification by sex. The prevalence of self-reported hunger was 13%. Self-reported hunger was associated with a higher prevalence of every health risk behavior/adverse experience analyzed, even after adjusting for sex, grade, and race/ethnicity. Sex did not modify associations. Findings underscore needs for longitudinal research with more robust measures of adolescent food insecurity to clarify the temporality of relationships.

Racial And Ethnic Disparities In Postpartum Care In The Greater Boston Area During The Covid-19 Pandemic, Tianyue Mi, Peiyin Hung, Xiaoming Li Ph.D., Alecia Mcgregor, Jinggui He, Jie Zhou

Faculty Publications

IMPORTANCE Racial and ethnic disparities in postpartum care access have been well identified in the United States. Such disparities could be exacerbated by the COVID-19 pandemic because of amplified economic distress and compromised social capital among pregnant women who belong to racial or ethnic minority groups.

OBJECTIVE To examine whether the COVID-19 pandemic is associated with an increase in the existing racial and ethnic disparity in postpartum care access.

DESIGN, SETTING, AND PARTICIPANTS This was a retrospective cohort study using electronic health records data. Multinomial logistic regressions in an interrupted time series approach were used to assess monthly changes in …

Microbiome Assembly In Thawing Permafrost And Its Feedbacks To Climate, Jessica G. Ernakovich, Robyn A. Barbato, Virginia I. Ritch, Christina Schadel, Rebecca E. Hewitt, Stacey J. Doherty, Emily D. Whalen, Benjamin Abbott, Jiri Barta, Christina Biasi, Chris L. Chabot, Jenni Hultman, Christian Knoblauch, Maggie C. Y. Lau Vetter, Mary-Cathrine Leewis, Susanne Liebner, Rachel Mackelprang, Tullis C. Onstott, Andreas Richter, Ursel M. E. Schutte, Henri M. P. Siljanen, Neslihan Tas, Ina Timling, Tatiana A. Vishnivetskaya, Mark P. Waldrop, Matthias Winkel

Faculty Publications

The physical and chemical changes that accompany permafrost thaw directly influence the microbial communities that mediate the decomposition of formerly frozen organic matter, leading to uncertainty in permafrost–climate feedbacks. Although changes to microbial metabolism and community structure are documented following thaw, the generality of post-thaw assembly patterns across permafrost soils of the world remains uncertain, limiting our ability to predict biogeochemistry and microbial community responses to climate change. Based on our review of the Arctic microbiome, permafrost microbiology, and community ecology, we propose that Assembly Theory provides a framework to better understand thaw-mediated microbiome changes and the implications for community …

Robust Network Stability Of Mosquitoes And Human Pathogens Of Medical Importance, Donald A. Yee, Catherine Dean Bermond, Limarie J. Reyes-Torres, Nicole S. Fijman, Nicole A. Scavo, Joseph Nelsen, Susan H. Yee

Faculty Publications

Background: The exact number of mosquito species relevant to human health is unknown, posing challenges in understanding the scope and breadth of vector–pathogen relationships, and how resilient mosquito vector–pathogen networks are to targeted eradication of vectors.

Methods: We performed an extensive literature survey to determine the associations between mosquito species and their associated pathogens of human medical importance. For each vector–pathogen association, we then determined the strength of the associations (i.e., natural infection, lab infection, lab dissemination, lab transmission, known vector). A network analysis was used to identify relationships among all pathogens and vectors. Finally, we examined how …

Luminescence And Scintillation In The Niobium Doped Oxyfluoride Rb4Ge5O9F6:Nb, Darren Carone, Vladislav V. Klepov, Scott T. Misture, Joseph C. Schaeperkoetter, Luiz G. Jacobsohn, Mina Aziziha, Juliano Schorne-Pinto, Stuart A. J. Thomson, Adrian T. Hines, Theodore M. Besmann, Hans Conrad Zur Loye

Faculty Publications

A new niobium-doped inorganic scintillating oxyfluoride, Rb₄Ge₅O₉F₆:Nb, was synthesized in single crystal form by high-temperature flux growth. The host structure, Rb₄Ge₅O₉F₆, crystallizes in the orthorhombic space group Pbcn with lattice parameters a = 6.98430(10) Å, b = 11.7265(2) Å, and c = 19.2732(3) Å, consisting of germanium oxyfluoride layers made up of Ge₃O₉ units connected by GeO₃F₃ octahedra. In its pure form, Rb₄Ge₅O₉F₆ shows neither luminescence nor scintillation but when doped …

Long Chain Fatty Acids And Virulence Repression In Intestinal Bacterial Pathogens, Mary K. Mitchell, Melissa Ellermann

Faculty Publications

When bacterial pathogens enter the gut, they encounter a complex milieu of signaling molecules and metabolites produced by host and microbial cells or derived from external sources such as the diet. This metabolomic landscape varies throughout the gut, thus establishing a biogeographical gradient of signals that may be sensed by pathogens and resident bacteria alike. Enteric bacterial pathogens have evolved elaborate mechanisms to appropriately regulate their virulence programs, which involves sensing and responding to many of these gut metabolites to facilitate successful gut colonization. Long chain fatty acids (LCFAs) represent major constituents of the gut metabolome that can impact bacterial …

Environmental And Biological Controls On Sedimentary Bottom Types In The Puquios Of The Salar De Llamara, Northern Chile, Erica P. Suosaari, Amanda M. Oehlert, Ioan Lascu, Alan W. Decho, Alan M. Piggot, Alvaro T. Palma, Paul F. Machabee, R. Pamela Reid

Faculty Publications

The Puquios of the Salar de Llamara in the Atacama Desert, northern Chile, is a system of small lakes that is characterized by evaporitic mineral deposition and that commonly hosts microbial communities. This region is known for its extreme aridity, solar irradiance, and temperature fluctuations. The Puquios are a highly diverse ecosystem with a variety of sedimentary bottom types. Our previous results identified electrical conductivity (EC) as a first-order environmental control on bottom types. In the present paper, we extend our analysis to examine the effects of additional environmental parameters on bottom types and to consider reasons for the importance …

Population Structure Of Blackfin Tuna (Thunnus Atlanticus) In The Western Atlantic Ocean Inferred From Microsatellite Loci, Eric A. Saillant, Patricia L. Luque, Emily Short, Luca Antoni, Lionel Reynal, Cedric Pau, Freddy Arocha, Pollyanna Roque, Fabio Hazin

Faculty Publications

The blackfin tuna, Thunnus atlanticus, is a small tropical tuna exploited by recreational and commercial fisheries in various parts of its range. Information on stock structure is needed to develop management plans for this species but is currently lacking. In this work, 470 blackfin tuna from nine geographic populations were assayed at 13 homologous microsatellite markers to provide a first assessment of stock structure across the species range. The overall divergence among locality samples was very low (overall FST = 0.0004) indicating high connectivity of blackfin tuna across their range. No clear grouping of localities in differentiated units was …