Digital Commons Network^™

Worldwide Forest Surveys Reveal Forty-Three New Species In Phytophthora Major Clade 2 With Fundamental Implications For The Evolution And Biogeography Of The Genus And Global Plant Biosecurity, T. Jung, I. Milenković, Y. Balci, J. Janoušek, T. Kudláček, Z. Nagy, B. Baharuddin, J. Bakonyi, K. D. Broders, S. O. Cacciola, T. T. Chang, N. M. Chi, T. Corcobado, A. Cravador, B. Dordević, A. Durán, M. Ferreira, C. H. Fu, L. Garcia, A. Hieno, H. H. Ho, C. Hong, M. Junaid, K. Kageyama, T. Kuswinanti, C. Maia, T. Májek, H. Masuya, G. Magnano Di San Lio, B. Mendieta-Araica, N. Nasri, L. S.S. Oliveira, A. Pane

Faculty Publications

During 25 surveys of global Phytophthora diversity, conducted between 1998 and 2020, 43 new species were detected in natural ecosystems and, occasionally, in nurseries and outplantings in Europe, Southeast and East Asia and the Americas. Based on a multigene phylogeny of nine nuclear and four mitochondrial gene regions they were assigned to five of the six known subclades, 2a-c, e and f, of Phytophthora major Clade 2 and the new subclade 2g. The evolutionary history of the Clade appears to have involved the pre-Gondwanan divergence of three extant subclades, 2c, 2e and 2f, all having disjunct natural distributions on separate …

Transformative Insights: Break Up With Salt (Buws) Program’S Short-Term Influence On Hypertension Risk Factors, Jean Pierre Enriquez, Helena Salgado, Christopher Kuetsinya, Li Hsiang Lin, Elizabeth Gollub

Faculty Publications

Break Up with Salt (BUWS) is a four-session community-based nutrition education program aimed at reducing key controllable hypertension risk factors. This pilot study utilized a pre-post survey design to assess short-term outcomes on food behaviors (including DASH diet eating patterns), physical activity, and overall well-being, in two groups of participants. The first “pilot” group (n = 25) completed a comprehensive, 16-item survey; the second “abbreviated” group (n = 27) completed a 5-item survey. The pilot group experienced improvements in whole grain (p = 0.04), sweetened beverage consumption, watching/reducing sodium (p = 0.04) and fat (p = 0.05) consumption, and time …

An Island ‘Endemic’ Born Out Of Hybridization Between Introduced Lineages, Jessie F. Salter, Robb T. Brumfield, Brant C. Faircloth

Faculty Publications

Humans have profoundly impacted the distribution of plant and animal species over thousands of years. The most direct example of these effects is human-mediated movement of individuals, either through translocation of individuals within their range or through the introduction of species to new habitats. While human involvement may be suspected in species with obvious range disjunctions, it can be difficult to detect natural versus human-mediated dispersal events for populations at the edge of a species' range, and this uncertainty muddles how we understand the evolutionary history of populations and broad biogeographical patterns. Studies combining genetic data with archaeological, linguistic and …

Genome-Wide Polygenic Risk Score For Ckd In Individuals With Apol1 High-Risk Genotypes, Ha My T. Vy, Steven G. Coca, Ashwin Sawant, Ankit Sakhuja, Orlando M. Gutierrez, Richard Cooper, Ruth J.F. Loos, Carol R. Horowitz, Ron Do, Girish N. Nadkarni

Faculty Publications

No abstract provided.

Coastal Wetland Restoration Through The Lens Of Odum's Theory Of Ecosystem Development, Friedrich W. Keppeler, Annette S. Engel, Linda M. Hooper-Bùi, Paola C. López-Duarte, Charles W. Martin, Jill A. Olin, Katelyn J. Lamb, Michael J. Polito, Nancy N. Rabalais, Brian J. Roberts, Erick M. Swenson, Olaf P. Jensen

Faculty Publications

Advancing ecological restoration assessments requires a more detailed consideration of species interactions and ecosystem processes. Most restoration projects rely on a few metrics not always directly linked with ecological theory. Here, we used Odum's theory of ecosystem development to assess and compare the ecosystem structure and services of created marshes (4–6 years old) with preexisting, reference marshes in a brackish water region of the Mississippi River Delta. We built ecosystem models for created and reference marshes that integrated large datasets of stomach contents, stable isotopes, and taxa abundances. Despite strong resemblance in community structure, created marshes were at an earlier …

Artifactual Orthologs And The Need For Diligent Data Exploration In Complex Phylogenomic Datasets: A Museomic Case Study From The Andean Flora, Laura A. Frost, Ana M. Bedoya, Laura P. Lagomarsino

Faculty Publications

The Andes mountains of western South America are a globally important biodiversity hotspot, yet there is a paucity of resolved phylogenies for plant clades from this region. Filling an important gap in our understanding of the World's richest flora, we present the first phylogeny of Freziera (Pentaphylacaceae), an Andean-centered, cloud forest radiation. Our dataset was obtained via hybrid-enriched target sequence capture of Angiosperms353 universal loci for 50 of the ca. 75 spp., obtained almost entirely from herbarium specimens. We identify high phylogenomic complexity in Freziera, including the presence of data artifacts. Via by-eye observation of gene trees, detailed examination of …

Planetary Protection Knowledge Gap Closure Enabling Crewed Missions To Mars, James A. Spry, Bette Siegel, Corien Bakermans, David W. Beaty, Mary Sue Bell, James N. Benardini, Rosalba Bonaccorsi, Sarah L. Castro-Wallace, David A. Coil, Athena Coustenis, Peter T. Doran, Lori Fenton, David P. Fidler, Brian Glass, Stephen J. Hoffman, Fathi Karouia, Joel S. Levine, Mark L. Lupisella, Javier Martin-Torres, Rakesh Mogul, Karen Olsson-Francis, Sandra Ortega-Ugalde, Manish R. Patel, David A. Pearce, Margaret S. Race, Aaron B. Regberg, Petra Rettberg, John D. Rummel, Kevin Y. Sato, Andrew C. Schuerger, Elliot Sefton-Nash, Matthew Sharkey, Nitin K. Singh

Faculty Publications

As focus for exploration of Mars transitions from current robotic explorers to development of crewed missions, it remains important to protect the integrity of scientific investigations at Mars, as well as protect the Earth's biosphere from any potential harmful effects from returned martian material. This is the discipline of planetary protection, and the Committee on Space Research (COSPAR) maintains the consensus international policy and guidelines on how this is implemented. Based on National Aeronautics and Space Administration (NASA) and European Space Agency (ESA) studies that began in 2001, COSPAR adopted principles and guidelines for human missions to Mars in 2008. …

Synergnet: A Graph Neural Network Model To Predict Anticancer Drug Synergy, Mengmeng Liu, Gopal Srivastava, J. Ramanujam, Michal Brylinski

Faculty Publications

Drug combination therapy shows promise in cancer treatment by addressing drug resistance, reducing toxicity, and enhancing therapeutic efficacy. However, the intricate and dynamic nature of biological systems makes identifying potential synergistic drugs a costly and time-consuming endeavor. To facilitate the development of combination therapy, techniques employing artificial intelligence have emerged as a transformative solution, providing a sophisticated avenue for advancing existing therapeutic approaches. In this study, we developed SynerGNet, a graph neural network model designed to accurately predict the synergistic effect of drug pairs against cancer cell lines. SynerGNet utilizes cancer-specific featured graphs created by integrating heterogeneous biological features into …

Impaired, In Pairs, Cristina Carmody Tilley

Faculty Publications

Rape, like many other one-on-one aggressions, can be treated as both a crime and a tort. But neither body of law responds effectively to these aggressions. Criminal rape prosecution is notoriously difficult, and civil rape suits are notoriously rare. Today, as private law theorists have begun to study tort’s potential to drive social justice on issues of race, gender, and class, it is an ideal time to reassess the terms of civil liability for intimate injury. Culture has long limited “real rape” to premeditated, stranger-on-stranger, aggression. Consequently, tort has long categorized what this Essay terms “non-collaborative sex” as an intentional …

Random Forests For Detecting Weak Signals And Extracting Physical Information: A Case Study Of Magnetic Navigation, Mohammadamin Moradi, Zheng-Meng Zhai, Aaron Nielsen, Ying-Cheng Lai, Aaron P. Nielsen

Faculty Publications

It has been recently demonstrated that two machine-learning architectures, reservoir computing and time-delayed feed-forward neural networks, can be exploited for detecting the Earth’s anomaly magnetic field immersed in overwhelming complex signals for magnetic navigation in a GPS-denied environment. The accuracy of the detected anomaly field corresponds to a positioning accuracy in the range of 10–40 m. To increase the accuracy and reduce the uncertainty of weak signal detection as well as to directly obtain the position information, we exploit the machine-learning model of random forests that combines the output of multiple decision trees to give optimal values of the physical …

The Behavior Of ½⟨111⟩ Screw Dislocations In W–Mo Alloys Analyzed Through Atomistic Simulations, Lucas A. Heaton, Kevin Chu, Adib J. Samin

Faculty Publications

Analyzing plastic flow in refractory alloys is relevant to many different commercial and technological applications. In this study, screw dislocation statics and dynamics were studied for various compositions of the body-centered cubic binary alloy tungsten–molybdenum (W–Mo). The core structure did not appear to change for different alloy compositions, consistent with the literature. The pure tungsten and pure molybdenum samples had the lowest plastic flow, while the highest dislocation velocities were observed for equiatomic, W_0.5Mo_0.5 alloys. In general, dislocation velocities were found to largely align with a well-established dislocation mobility phenomenological model supporting two discrete dislocation mobility regimes, …

Lotic-Sipco2: Adaptation Of An Open-Source Co2 Sensor System And Examination Of Associated Emission Uncertainties Across A Range Of Stream Sizes And Land Uses, Andrew L. Robison, Lauren E. Koenig, Jody D. Potter, Lisle E. Snyder, Christopher W. Hunt, William H. Mcdowell, Wilfred M. Wollheim

Faculty Publications

River networks play a crucial role in the global carbon cycle, as relevant sources of carbon dioxide (CO2) to the atmosphere. Advancements in high-frequency monitoring in aquatic environments have enabled measurement of dissolved CO2 concentration at temporal resolutions essential for studying carbon variability and evasion from these dynamic ecosystems. Here, we describe the adaptation, deployment, and validation of an open-source and relatively low-cost in situ pCO2 sensor system for lotic ecosystems, the lotic-SIPCO2. We tested the lotic-SIPCO2 in 10 streams that spanned a range of land cover and basin size. Key system adaptations for lotic environments included prevention of biofouling, …

Heavy-Element Production In A Compact Object Merger Observed By Jwst, Andrew J. Levan, Benjamin P. Gompertz, Om Sharan Salafia, Mattia Bulla, Eric Burns, Kenta Hotokezaka, Luca Izzo, Gavin P. Lamb, Daniele B. Malesani, Samantha R. Oates, Maria Edvige Ravasio, Alicia Rouco Escorial, Benjamin Schneider, Nikhil Sarin, Steve Schulze, Nial R. Tanvir, Kendall Ackley, Gemma Anderson, Gabriel B. Brammer, Lise Christensen, Vikram S. Dhillon, Phil A. Evans, Michael Fausnaugh, Wen Fai Fong, Andrew S. Fruchter, Chris Fryer, Johan P.U. Fynbo, Nicola Gaspari, Kasper E. Heintz, Jens Hjorth, Jamie A. Kennea, Mark R. Kennedy, Tanmoy Laskar

Faculty Publications

The mergers of binary compact objects such as neutron stars and black holes are of central interest to several areas of astrophysics, including as the progenitors of gamma-ray bursts (GRBs)¹, sources of high-frequency gravitational waves (GWs)² and likely production sites for heavy-element nucleosynthesis by means of rapid neutron capture (the r-process)³. Here we present observations of the exceptionally bright GRB 230307A. We show that GRB 230307A belongs to the class of long-duration GRBs associated with compact object mergers^4–6 and contains a kilonova similar to AT2017gfo, associated with the GW merger GW170817 (refs. ^7–12). …

Detecting Substance Use Disorder Using Social Media Data And Dark Web: Time And Knowledge Aware Study, Usha Lokala, Orchid Chetia Phukan, Triyasha Ghosh Dastidar, Francois Lamy, Raminta Daniulaityte, Amit Sheth

Faculty Publications

Opioid and substance misuse is rampant in the United States today, with the phenomenon known as the "opioid crisis". The relationship between substance use and mental health has been extensively studied, with one possible relationship being: substance misuse causes poor mental health. However, the lack of evidence on the relationship has resulted in opioids being largely inaccessible through legal means. This study analyzes the substance use posts on social media with opioids being sold through crypto market listings. We use the Drug Abuse Ontology, state-of-the-art deep learning, and knowledge-aware BERT-based models to generate sentiment and emotion for the social media …

Systematic Effects On A Compton Polarimeter At The Focus Of An X-Ray Mirror, M Aoyagi, R G. Bose, S Chun, E Gau, K Hu, K Ishiwata, N K. Iyer, Fabian Kislat, M Kiss, K Klepper, H Krawczynski, L Lisalda, Y Maeda, F Af Malmborg, H Matsumoto, A Miyamoto, T Miyazawa, M Pearce, B F. Rauch, N Rodriguez Cavero, S Spooner, H Takahashi, Y Uchida, A T. West, K Wimalasena, M. Yoshimoto

Faculty Publications

XL-Calibur is a balloon-borne Compton polarimeter for X-rays in the $\sim$15-80 keV range. Using an X-ray mirror with a 12 m focal length for collecting photons onto a beryllium scattering rod surrounded by CZT detectors, a minimum-detectable polarization as low as $\sim$3% is expected during a 24-hour on-target observation of a 1 Crab source at 45$^{\circ}$ elevation. Systematic effects alter the reconstructed polarization as the mirror focal spot moves across the beryllium scatterer, due to pointing offsets, mechanical misalignment or deformation of the carbon-fiber truss supporting the mirror and the polarimeter. Unaddressed, this can give rise to a spurious polarization …

Distinguishing Molecular Mechanical Action From Photothermal And Photodynamic Behavior, Jacob L. Beckham, Thomas S. Bradford, Ciceron Ayala-Orozco, Ana L. Santos, Dallin Arnold, Alexis R. Van Venrooy, Víctor García-López, Robert Pal, James M. Tour

Faculty Publications

Molecular motors (MM) are molecular machines, or nanomachines, that rotate unidirectionally upon photostimulation and perform mechanical work on their environment. In the last several years, it has been shown that the photomechanical action of MM can be used to permeabilize lipid bilayers, thereby killing cancer cells and pathogenic microorganisms and controlling cell signaling. The work contributes to a growing acknowledgement that the molecular actuation characteristic of these systems is useful for various applications in biology. However, the mechanical effects of molecular motion on biological materials are difficult to disentangle from photodynamic and photothermal action, which are also present when a …

Effects Of Adjunct Questions On L2 Reading Comprehension With Texts Of Different Types, Yunmei Sun, Wenhui Zhou, Shifang Tang

Faculty Publications

Answering text-related questions while reading is a questioning strategy which is called adjunct questions or embedded questions, the benefits of which have been established in first language reading as to enhance comprehension. The present study aims to study the effects different adjunct questions exert on second-language (L2) readers’ comprehension of texts of various types. One hundred and forty-four intermediate-level Chinese EFL learners participated in this study and were divided randomly into six groups. Each group was given either a narrative or an expository text with ‘what or why’ questions or no questions. A brief topic familiarity questionnaire was attached to …

Radiation From An Oscillating Dipole In The Presence Of Photon-Sector Cpt And Lorentz Violation, Joshua O'Connor, Brett Altschul

Faculty Publications

We examine one of the standard loci for studying electromagnetic wave emission - the radiation from an oscillating electric dipole - in a model in which the electromagnetic sector is modified to include novel CPT- and Lorentz-violating propagation effects involving a preferred axial vector background. We evaluate the vacuum-birefringent radiation fields, including nonperturbative terms where appropriate. In general, the energy momentum carried by the fields in this model is known to have a complicated nonperturbative structure, which cannot be captured by naive power-series expansions in the components of the preferred background vector. However, we nevertheless find that at the lowest …

Technical Efficiency, Scale Effect, And Trade Liberalization: Evidence From The Nepalese Manufacturing Sector, Amrit Pathak, Shawn Leu, Mari L. Robertson, Mahinda Siriwardanaa

Faculty Publications

This paper investigates the impact of trade liberalization and scale of operation on technical efficiency of the Nepalese manufacturing sector after the 1992 economic liberalization. The study utilizes industry panel data and analyses the relationship using stochastic frontier analysis. We find that the manufacturing sector of Nepal is highly inefficient. Technical progress is found initially, however after 1996/97, technical regress dominates each period. Sectoral efficiency, on average, is estimated around 28.7% of potential value added whereas inefficiency is as high as 146%. The scale of operation, as expected, is highly significant in explaining industry efficiency. Trade liberalization, on the other …

Drivers Of Anticoagulant Rodenticide Exposure In Fishers (Pekania Pennanti) Across The Northeastern United States, Georgianna Silveira, Jacqueline L. Frair, Lisa Murphy, Julie C. Ellis, David Needle, Stephanie A. Cunningham, Amanda Watson, Aaron Facka, Patrick Tate, Shevenell Webb, Kim Royar, Chris Bernier, Thomas Keller, Krysten Schuler

Faculty Publications

Studies in parts of Europe, New Zealand, and North America indicate uptake of anticoagulant rodenticides (ARs) by predatory mammals to be widespread and common, with proximity to urban and agricultural areas being an important driver of exposure. Yet, little is known regarding the patterns and drivers of AR exposure in predatory mammals within more forest-dominated landscapes. Across the forest-dominated northeastern United States (US), a region spanning Pennsylvania to Maine, we tested livers from 597 fisher (Pekania pennanti) obtained from the legal harvest for 11 anticoagulant rodenticide compounds. We used kriging to determine potential hot zones (within or among states) and …

Drivers Of Anticoagulant Rodenticide Exposure In Fishers (Pekania Pennanti) Across The Northeastern United States, Georgianna Silveira, Jacqueline L. Frair, Lisa Murphy, Julie C. Ellis, David Needle, Stephanie A. Cunningham, Amanda Watson, Aaron Facka, Patrick Tate, Shevenell Webb, Kim Royar, Chris Bernier, Thomas Keller, Krysten Schuler

Faculty Publications

Studies in parts of Europe, New Zealand, and North America indicate uptake of anticoagulant rodenticides (ARs) by predatory mammals to be widespread and common, with proximity to urban and agricultural areas being an important driver of exposure. Yet, little is known regarding the patterns and drivers of AR exposure in predatory mammals within more forest-dominated landscapes. Across the forest-dominated northeastern United States (US), a region spanning Pennsylvania to Maine, we tested livers from 597 fisher (Pekania pennanti) obtained from the legal harvest for 11 anticoagulant rodenticide compounds. We used kriging to determine potential hot zones (within or among states) and …

Experimental Determination Of The Electrochemical Properties Of Bismuth Chloride In Eutectic Licl-Kcl And Licl-Kcl-Cacl2 Molten Salts, Greg Chipman, Bryant Johnson, Cameron Vann, Lance Whitesides, Devin Rappleye

Faculty Publications

Bismuth has been investigated as a potential liquid electrode for molten salt electrorefining, but the electrochemical behavior of Bi³⁺/Bi redox couple has received scant attention in eutectic LiCl-KCl melts and no studies were found in the ternary LiCl-KCl-CaCl₂ melts. LiCl-KCl-CaCl₂ melts offer some advantages over eutectic LiCl-KCl, such as a lower melting point. Cyclic voltammetry, square wave voltammetry, chronoamperometry, chronopotentiometry and open-circuit chronopotentiometry were used to measure electrochemical parameters, such as diffusivity and standard apparent potential of bismuth electrodeposition, in LiCl-KCl and LiCl-KCl-CaCl₂ eutectics. The mean diffusivity values of 6.71 x 10^-6 cm^{2 …}

Block-Based Programming For Two-Armed Robots: A Comparative Study, Felipe Fronchetti, Chandler Barfield, Nico Ritschel, Gabriella Chang, Logan Schorr, Rodrigo Spinola, Reid Holmes, David C. Shepherd

Faculty Publications

Programming industrial robots is difficult and expensive. Although recent work has made substantial progress in making it accessible to a wider range of users, it is often limited to simple programs and its usability remains untested in practice. In this article, we introduce Duplo, a block-based programming environment that allows end-users to program two-armed robots and solve tasks that require coordination. Duplo positions the program for each arm side-by-side, using the spatial relationship between blocks from each program to represent parallelism in a way that end-users can easily understand. This design was proposed by previous work, but not implemented or …

On Personality Measures And Their Data: A Classification Of Measurement Approaches And Their Recommended Uses, John D. Mayer, Victoria M. Bryan

Faculty Publications

We employ a new approach for classifying methods of personality measurement such as self-judgment, mental ability, and lifespace measures and the data they produce. We divide these measures into two fundamental groups: personal-source data, which arise from the target person’s own reports, and external-source data, which derive from the areas surrounding the person. These two broad classes are then further divided according to what they target and the response processes that produce them. We use the model to organize roughly a dozen kinds of data currently employed in the field. With this classification system in hand, we …

Left Ventricle Function And Post-Transcriptional Events With Exercise Training In Pigs, Stephanie L. Samani, Shayne C. Barlow, Lisa A. Freeburg, Traci L. Jones, Marlee Poole, Mark A. Sarzynski Ph.D., Faha, Facsm, Michael R. Zile, Tarek Shazly, Francis G. Spinale

Faculty Publications

Background

Standardized exercise protocols have been shown to improve overall cardiovascular fitness, but direct effects on left ventricular (LV) function, particularly diastolic function and relation to post-transcriptional molecular pathways (microRNAs (miRs)) are poorly understood. This project tested the central hypothesis that adaptive LV remodeling resulting from a large animal exercise training protocol, would be directly associated with specific miRs responsible for regulating pathways relevant to LV myocardial stiffness and geometry.

Methods and results

Pigs (n = 9; 25 Kg) underwent a 4 week exercise training protocol (10 degrees elevation, 2.5 mph, 10 min, 5 days/week) whereby LV chamber stiffness (KC) …

Left Ventricle Function And Post-Transcriptional Events With Exercise Training In Pigs, Stephanie L. Samani, Shayne C. Barlow, Lisa A. Freeburg, Traci L. Jones, Marlee Poole, Mark A. Sarzynski Facsm, Michael R. Zile, Tarek Shazly, Francis G. Spinale

Faculty Publications

Background

Standardized exercise protocols have been shown to improve overall cardiovascular fitness, but direct effects on left ventricular (LV) function, particularly diastolic function and relation to post-transcriptional molecular pathways (microRNAs (miRs)) are poorly understood. This project tested the central hypothesis that adaptive LV remodeling resulting from a large animal exercise training protocol, would be directly associated with specific miRs responsible for regulating pathways relevant to LV myocardial stiffness and geometry.

Methods and results

Pigs (n = 9; 25 Kg) underwent a 4 week exercise training protocol (10 degrees elevation, 2.5 mph, 10 min, 5 days/week) whereby LV chamber stiffness (KC) …

Estimating Lentic Recreational Fisheries Catch And Effort Across The United States, Matthew D. Robertson, Stephen R. Midway, Holly S. Embke, Anna L. Kaz, Mitchel Lang, Craig Paukert, Nicholas A. Sievert, Lyndsie Wszola, Abigail J. Lynch

Faculty Publications

Recreational fisheries represent a socially, ecologically, and economically significant component of global fisheries. The U.S. Inland Creel and Angler Survey Catalog (CreelCat) database includes inland recreational fisheries survey data across the United States to facilitate large-scale analyses. However, because survey methods differ, a statistical method capable of integrating these surveys is necessary to assess patterns and relationships across regions. Here, we developed a hierarchical generalized linear mixed modeling approach to estimate the relationship between daily recreational fisheries catch and effort based on waterbody, socio-economic, and ecological covariates. We applied this approach to CreelCat data on lentic waterbodies and found that …

Seasonal, Spatial, And Water Level Predictors Of Angler Catch And Effort Within Texas Black Bass Reservoir Fisheries, David R. Smith, J. Warren Schlechte, Randall A. Myers, Michael A. Dance, Jacob D. Norman, Mitchell T. Nisbet

Faculty Publications

Objective: We sought to identify seasonal, spatial, and water level predictors of black bass angler catch rates and effort densities (i.e., angler-hours/ha) within Texas reservoirs. Methods: We tested for predictors of effort density and catch rate while building generalized additive models with responses derived from a long-term creel data set and explanatory variables derived from the season of the creel survey, geoposition of the reservoir, and water level data obtained from the Texas Water Development Board. Result: Season significantly affected models, with strong positive effects on catch rates during the spring and fall and strong positive effects on effort densities …

Understanding Implications Of Detection Heterogeneity In Wildlife Abundance Estimation, Jeffrey L. Laake, Bret A. Collier

Faculty Publications

Negative bias in mark-recapture abundance estimators due to heterogeneity in detection (capture) probability is a well-known problem, but we believe most biologists do not understand why heterogeneity causes bias and how bias can be reduced. We demonstrate how heterogeneity creates dependence and bias in mark-recapture approaches to abundance estimation. In comparison, heterogeneity, and hence estimator bias, is not as problematic for distance sampling and mark-resight methods because both techniques estimate detection probabilities based on a known quantity. We show how the introduction of a known number of individuals planted into a study population prior to a mark-recapture survey can reduce …

Residual-Based Error Corrector Operator To Enhance Accuracy And Reliability Of Neural Operator Surrogates Of Nonlinear Variational Boundary-Value Problems, Prashant K. Jha

Faculty Publications

This work focuses on developing methods for approximating the solution operators of a class of parametric partial differential equations via neural operators. Neural operators have several challenges, including the issue of generating appropriate training data, cost-accuracy trade-offs, and nontrivial hyperparameter tuning. The unpredictability of the accuracy of neural operators impacts their applications in downstream problems of inference, optimization, and control. A framework based on the linear variational problem that gives the correction to the prediction furnished by neural operators is considered based on earlier work in JCP 486 (2023) 112104. The operator, called Residual-based Error Corrector Operator or simply Corrector …