Digital Commons Network^™

A Reference Genome For The Nectar-Robbing Black-Throated Flowerpiercer (Diglossa Brunneiventris), A E. Hiller, R T. Brumfield, B C. Faircloth

Faculty Publications

Black-throated Flowerpiercers (Diglossa brunneiventris) are one species representing a phenotypically specialized group of tanagers (Thraupidae) that have hooked bills which allow them to feed by stealing nectar from the base of flowers. Members of the genus are widely distributed in montane regions from Mexico to northern Argentina, and previous studies of Diglossa have focused on their systematics, phylogenetics, and interesting natural history. Despite numerous studies of species within the genus, no genome assembly exists to represent these nectivorous tanagers. We described the assembly of a genome sequence representing a museum-vouchered, wild, female D. brunneiventris collected in Peru. By combining Pacific …

Calet Observations During The First 5 Years On The Iss, P. S. Marrocchesi, O. Adriani, Y. Akaike, Y. Asaoka, E. Berti, G. Bigongiari, M. Bongi, P. Brogi, A. Bruno, N. Cannady, C. Checchia, M. L. Cherry, G. Collazuol, A. W. Ficklin, T. G. Guzik, M. Ichimura, M. H. Israel, K. Kasahara, Y. Kawakubo, J. F. Krizmanic, A. M. Messineo, J. W. Mitchell, S. Miyake, M. Mori, N. Mori, H. M. Motz, K. Munakata, L. Pacini, F. Palma, P. Papini, B. F. Rauch, S. B. Ricciarini, T. Sakamoto

Faculty Publications

The CALorimetric Electron Telescope CALET is collecting science data on the International Space Station since October 2015 with excellent and continuous performance. Energy is measured with a deep homogeneous calorimeter (1.2 nuclear interaction lengths, 27 radiation lengths) preceded by an imaging pre-shower (3 radiation lengths, 1mm granularity) providing tracking and 10-5 electron/proton discrimination. Two independent sub-systems identify the charge Z of the incident particle from proton to iron and above (Z<40). CALET measures the cosmic-ray electron + positron flux up to 20 TeV, gamma rays up to 10 TeV, and nuclei up to the PeV scale. In this paper, we report the on-orbit performance of the instrument and summarize the main results obtained during the first 5 years of operation, including the electron + positron energy spectrum and the individual spectra of protons, heavier nuclei and iron. Solar modulation and gamma-ray observations are also concisely reported, as well as transient phenomena and the search for gravitational wave counterparts.

Use Of Racial And Ethnic Categories In Medical Testing And Diagnosis: Primum Non Nocere, Jay S. Kaufman, Joanna Merckx, Richard S. Cooper

Faculty Publications

BACKGROUND: Use of race and ethnicity is common in medical tests and procedures, even though these categories are defined by sociological, historical, and political processes, and vary considerably in their definitions over time and place. Because all societies organize themselves around these constructs in some way, they are undeniable facets of the human experience, with myriad health consequences. In the biomedical literature, they are also commonly interpreted as representing biological heterogeneity that is relevant for health and disease. CONTENT: We review the use of race and ethnicity in medical practice, especially in the USA, and provide 2 specific examples to …

Effects Of Cover Crops On Beetle Assemblages In Tea Plantations, Li Lin Chen, Gabor Pozsgai, Xiang Yu Li, Lei Li, Gadi V.P. Reddy, Min Sheng You

Faculty Publications

Coleoptera are visible members of food webs in tea plantations, with high species richness and abundance. Many tea pests, as well as natural enemies, are members of this order, so a knowledge of how groundcovers affect beetles can aid pest management. We collected beetles in a replicated field experiment in the Wuyi Mountains, Fujian Province, China. Tea was intercropped with Paspalum notatum or Chamaecrista rotundifolia, or rows were cleared to bare ground, or in the control they were left unmanaged to allow weeds to grow naturally. Sampling, done by sweep netting and vegetation beating, was conducted monthly, between May 2006 …

Regional High-Resolution Benthic Habitat Data From Planet Dove Imagery For Conservation Decision-Making And Marine Planning, Steven R. Schill, Valerie Pietsch Mcnulty, F. Joseph Pollock, Fritjof Lüthje, Jiwei Li, David E. Knapp, Joe D. Kington, Trevor Mcdonald, George T. Raber, Ximena Escovar-Fadul, Gregory P. Asner

Faculty Publications

High-resolution benthic habitat data fill an important knowledge gap for many areas of the world and are essential for strategic marine conservation planning and implementing effective resource management. Many countries lack the resources and capacity to create these products, which has hindered the development of accurate ecological baselines for assessing protection needs for coastal and marine habitats and monitoring change to guide adaptive management actions. The PlanetScope (PS) Dove Classic SmallSat constellation delivers high-resolution imagery (4 m) and near-daily global coverage that facilitates the compilation of a cloud-free and optimal water column image composite of the Caribbean’s nearshore environment. These …

Word-Learning Trajectories Influence Long-Term Recall In Children With Developmental Language Disorder And Typical Development, Justin B. Kueser, Laurence B. Leonard, Patricia Deevy, Eileen Haebig, Jeffrey D. Karpicke

Faculty Publications

Introduction: Children with developmental language disorder (DLD) have difficulties learning words. However, the severity of these difficulties can be reduced through word learning procedures that incorporate repeated spaced retrieval (RSR). Previous studies have shown positive outcomes with RSR but we still know very little about how learning unfolds with this procedure. In this study, we focus on the process of learning under RSR. Methods: We analyze the learning data from children with DLD and with typical development (TD) from three recent studies using RSR. We fit growth curves to the trial-by-trial learning data for immediate and spaced retrieval trials and …

Comparison Of The Diagnostic Evaluation Of Language Variation–Screening Test Risk Subtest To Two Other Screeners For Low-Income Prekindergartners Who Speak African American English And Live In The Urban South, Christy Wynn Moland, Janna B. Oetting

Faculty Publications

Purpose: We compared the Risk subtest of the Diagnostic Evaluation of Language Variation–Screening Test (DELV– Screening Test Risk) with two other screeners when administered to low-income prekindergartners (pre-K) who spoke African American English (AAE) in the urban South. Method: Participants were 73 children (six with a communication disorder and 67 without) enrolled in Head Start or a publicly funded pre-K in an urban Southern city. All children completed the DELV–Screening Test Risk, the Fluharty Preschool Speech and Language Screening Test–Second Edition (FLUHARTY-2), and the Washington and Craig Language Screener (WCLS). Test order was counterbalanced across participants. Results: DELV–Screening Test Risk …

Grow Fast, Die Young: Does Compensatory Growth Reduce Survival Of Juvenile Blacktip Sharks (Carcharhinus Limbatus) In The Western Gulf Of Mexico?, Philip Matich, Jeffrey D. Plumlee, Mark Fisher

Faculty Publications

Effective conservation and management necessitate an understanding of the ecological mechanisms that shape species life histories in order to predict how variability in natural and anthropogenic impacts will alter growth rates, recruitment, and survival. Among these mechanisms, the interaction between parturition timing and prey availability frequently influences offspring success, particularly when postnatal care is absent. Here, we assess how parturition timing and nursery conditions, including prey abundance and environmental conditions, influence the growth and potential survival of blacktip sharks (Carcharhinus limbatus) in western Gulf of Mexico (GOM) estuaries over their first year. Catch data from long-term gillnet monitoring allowed for …

Survival Of Western Gulf Coast Mottled Ducks (Anas Fulvigula) In The Path Of A Category 4 Hurricane, Kevin M. Ringelman, Elizabeth S. Bonczek, Joseph R. Marty, Ashley R. Booth, Alexandre L. Dopkin

Faculty Publications

Tropical cyclones are the most powerful storms on earth, causing catastrophic damage to human lives and infrastructure. Hurricanes also cause wildlife mortality when they make landfall, but the severity of these effects is difficult to quantify because data collection is either logistically impossible or deprioritized in the wake of human tragedy. On August 27, 2020, Hurricane Laura made landfall in southwestern Louisiana with maximum sustained winds of 241 kph (150 mph), making it one of the most powerful storms to strike the mainland United States. Hurricane Laura passed directly over the core breeding range of the western Gulf Coast population …

Morphological Consequences Of Climate Change For Resident Birds In Intact Amazonian Rainforest, Vitek Jirinec, Ryan C. Burner, Bruna R. Amaral, Richard O. Bierregaard, Gilberto Fernández-Arellano, Angélica Hernández-Palma, Erik I. Johnson, Thomas E. Lovejoy, Luke L. Powell, Cameron L. Rutt, Jared D. Wolfe, Philip C. Stouffer

Faculty Publications

Warming from climate change is expected to reduce body size of endotherms, but studies from temperate systems have produced equivocal results. Over four decades, we collected morphometric data on a nonmigratory understory bird community within Amazonian primary rainforest that is experiencing increasingly extreme climate. All 77 species showed lower mean mass since the early 1980s-nearly half with 95% confidence. A third of species concomitantly increased wing length, driving a decrease in mass:wing ratio for 69% of species. Seasonal precipitation patterns were generally better than temperature at explaining morphological variation. Short-term climatic conditions affected all metrics, but time trends in wing …

Erratum: Range-Wide Population Genetic Analysis Of Seaside Sparrows (Ammospiza Maritima) Supports At Least Five Distinct Population Segments That Do Not Align With Current Subspecies Descriptions (The Condor Doi: 10.1093/Ornithapp/Duab019), Kathryn E.C. Davis, Amie E. Settlecowski, Mackenzie R. Roeder, Carolyn Enloe, Thomas Virzi, Margaret E. Hunter, Stefan Woltmann, Sabrina S. Taylor

Faculty Publications

In the originally published version of this manuscript, the author Stefan Woltmann was erroneously given affiliation 3, Florida Fish and Wildlife Conservation Commission, Lovett E. Williams Jr. Wildlife Research Lab, Gainesville, Florida, USA. Dr. Woltmann s correct information is affiliation 2, Department of Biology and Center of Excellence for Field Biology, Austin Peay State University, Clarksville, Tennessee, USA, and this has been updated in the original article. The publisher regrets this error.

Author Correction: Discovery And Confirmation Of The Shortest Gamma-Ray Burst From A Collapsar (Nature Astronomy, (2021), 5, 9, (917-927), 10.1038/S41550-021-01428-7), Tomás Ahumada, Leo P. Singer, Shreya Anand, Michael W. Coughlin, Mansi M. Kasliwal, Geoffrey Ryan, Igor Andreoni, S. Bradley Cenko, Christoffer Fremling, Harsh Kumar, Peter T.H. Pang, Eric Burns, Virginia Cunningham, Simone Dichiara, Tim Dietrich, Dmitry S. Svinkin, Mouza Almualla, Alberto J. Castro-Tirado, Kishalay De, Rachel Dunwoody, Pradip Gatkine, Erica Hammerstein, Shabnam Iyyani, Joseph Mangan, Dan Perley, Sonalika Purkayastha, Eric Bellm, Varun Bhalerao, Bryce Bolin, Mattia Bulla, Christopher Cannella, Poonam Chandra, Dmitry A. Duev

Faculty Publications

In the version of this Letter initially published, the Acknowledgements section omitted to include the following: “Based on observations obtained at the international Gemini Observatory, a program of NSF’s NOIRLab, which is managed by the Association of Universities for Research in Astronomy (AURA) under a cooperative agreement with the National Science Foundation on behalf of the Gemini Observatory partnership: the National Science Foundation (United States), National Research Council (Canada), Agencia Nacional de Investigación y Desarrollo (Chile), Ministerio de Ciencia, Tecnología e Innovación (Argentina), Ministério da Ciência, Tecnologia, Inovações e Comunicações (Brazil), and Korea Astronomy and Space Science Institute (Republic of …

Election Observation Post-2020, Rebecca Green

Faculty Publications

The United States is in the midst of a crisis in confidence in elections, despite the many process protections baked into every stage of election administration. Part of the problem is that few Americans know just how rigorous the protections in place are, and most Americans have no concept of how modern elections are run. Election observation statutes are intended to provide a window for members of the public to learn about and oversee the process and to satisfy themselves that elections are fair and that outcomes are reliable. Yet in 2020, in part due to unforeseen pandemic conditions, election …

Uncertainty Analysis For Ccd-Augmented Casi® Brdf Measurement System, Todd V. Small, Samuel D. Butler, Michael A. Marciniak

Faculty Publications

This work presents a measurement uncertainty analysis for a system designed to simultaneously capture specular in-plane and out-of-plane bidirectional reflectance distribution function (BRDF) data with high spatial resolution by augmenting the Complete Angle Scatter Instrument (CASI®) with a charge-coupled device (CCD) camera. Various scatter flux, incident flux, scatter angle, and detector solid angle uncertainty contributions are considered and evaluated based on imperfectly known system parameters. In particular, incident flux temporal fluctuation, detector noise and non-linearity, and out-of-plane aperture misalignment considerations each require significant adjustment from original CASI® uncertainty analysis, and expressions for neutral density (ND) filter, scatter angle, and solid …

Reporting Of Concussion Symptoms By A Nationwide Survey Of United States Parents Of Middle School Children, Zachary Y. Kerr, Brittany M. Ingram, Christine E. Callahan, Aliza K. Nedimyer, Avinash Chandran, Melissa K. Kossman, Julia Hoang, Paula Gildner, Johna K. Register-Mihalik

Faculty Publications

This cross-sectional study assessed concussion symptom knowledge of parents of middle school (MS) children (aged 10–15 years) through a free-response item that solicited concussion symptoms and compared findings to a pre-validated scale-based measure. A self-administered online questionnaire was sent to a panel of randomly selected United States residents who were recruited by a third-party company, aged ≥ 18 years, and identified as parents of MS children. Via a free-response item, parents listed what they believed were concussion symptoms. Multiple sections later, parents identified potential concussion symptoms via a scale measure, which featured 25 items (22 actual symptoms, three distractor symptoms) …

Society And Sites Of Conscience: Operational Excellence In Prison Industries, Dan Bumblauskas,, Russell Guay, Steve Forbes, Salil Kalghatgi

Faculty Publications

Prisons can utilize effective operations management and continuous improvement techniques to fulfil the obligations of stakeholders and provide an opportunity to try and support the rehabilitation of inmates. Iowa Prison Industries (IPI) offers a work training program for incarcerated individuals under the supervision of the Iowa Department of Corrections (IDOC). The program works with approximately 800 incarcerated “associates” to help them acquire skills necessary to obtain gainful employment upon release. This article shares some of the history of IPI’s Operational Excellence (OpEx) as well as reports on program impact. Preliminary findings and success outcomes have been encouraging.

Low Light Intensity Delays Vegetative Phase Change, Mingli Xu, Tieqiang Hu, R Scott Poethig

Faculty Publications

Plants that develop under low light (LL) intensity often display a phenotype known as the “shade tolerance syndrome (STS)”. This syndrome is similar to the phenotype of plants in the juvenile phase of shoot development, but the basis for this similarity is unknown. We tested the hypothesis that the STS is regulated by the same mechanism that regulates the juvenile vegetative phase by examining the effect of LL on rosette development in Arabidopsis (Arabidopsis thaliana). We found that LL prolonged the juvenile vegetative phase and that this was associated with an increase in the expression of the master …

A Work/Life Teeter Totter: Using Demand Based Principles For Spiritual Operations Management, Dan Bumblauskas, Paul Bumblauskas

Faculty Publications

The purpose of this article is to detail how spirituality is a critical component to work/life balance and how individual and organizational spirituality impact operations management. Balancing key areas of work and professional life become an important part of creating happy and mutually satisfying relationships. We have identified six critical elements of life balance that lead towards optimized productivity (in no order of significance): Career, Family, Community, Spiritual, Health (includes sleep), Pleasure. Spirituality is one of the six components that must be defined, with a corresponding work and personal development plan, at an individual and organizational and operations management level.

Vaccine Clinical Trials And Data Infrastructure, Ana Santos Rutschman

Faculty Publications

We find ourselves at a momentous turn in the history of vaccines. The COVID-19 pandemic triggered a quasi-global vaccine race that not only compressed vaccine research and development (R&D) timelines, but also paved the way for the administration of a new type of vaccine technology – mRNA vaccines, which work in substantially different ways from the vaccines in use before the pandemic.

While the process of bringing emerging COVID-19 vaccines to market has taken place in an unusually short timeframe, it was largely predicated on the same scientific and regulatory processes that govern the development, approval and deployment of new …

Monetary Transmission In Money Markets: The Not-So-Elusive Missing Piece Of The Puzzle, Zhengyang Chen, Victor Valcarcel

Faculty Publications

We investigate the effects of U.S. monetary policy shocks from alternative policy indicators for a modern sample encompassing 1988–2020. The choice of the Wu and Xia (2016) shadow federal funds rate leads to persistent price puzzles. These puzzles arise despite inclusion of the usual suspect fixes such as commodity prices, federal funds futures and forward rate data. We find they occur at monthly and quarterly frequencies. We consider alternative indicators with the same broad monetary aggregates Keating et al. (2019) employed in their investigation of a historical sample. They provide a consistent resolution of the price puzzle and they do …

Evaluation Of Seasonal Heat Stress On Transcriptomic Profiles And Global Dna Methylation Of Bovine Oocytes, Fabian A. Diaz, Emilio J. Gutierrez-Castillo, Brittany A. Foster, Paige T. Hardin, Kenneth R. Bondioli, Zongliang Jiang

Faculty Publications

Heat stress affects oocyte developmental competence and is a major cause of reduced fertility in heat stressed cattle. Negative effects of heat stress on the oocyte have been observed at morphological, biochemical and developmental levels. However, the mechanisms by which heat stress affects the oocyte at the transcriptional and epigenetic levels remain to be further elucidated. Here we aimed to investigate the effect of heat stress on oocyte quality, transcriptomic profiles and DNA methylation of oocytes collected through the transition from spring to summer under Louisiana conditions. Summer season resulted in a lower number of high quality oocytes obtained compared …

Very Young Child Survivors’ Perceptions Of Their Father’S Suicide: Exploring Bibliotherapy As Postvention Support, Cortland L. Watson, Elizabeth Cutrer, Melissa A. Heath, Erica E. Miller, Terrell A. Young, Suzanne Wilson

Faculty Publications

Each year in the United States, 7000 to 30,000 children experience their parent’s suicide. Due to the stigma associated with suicide, feelings of guilt, and intense grief, surviving family members avoid talking about suicide. Over time, children struggle with confusion and intense emotions associated with their parent’s suicide. In this study, seven adults, who reported being younger than six years old at the time of their father’s suicide, participated in individual semi-structured interviews. Participants’ responses highlight the challenges that young children face due to limited memories of their deceased parent. Interviews concluded with an opportunity for participants to review and …

Ross Sea Dissolved Organic Matter Optical Properties During An Austral Summer: Biophysical Influences, Eurico J. D'Sa, Hyun-Cheol Kim, Sun-Yong Ha, Ishan Joshi

Faculty Publications

The Ross Sea, one of the most productive regions in the Southern Ocean, plays a significant role in deep water formation and carbon cycling. Dissolved organic carbon (DOC) concentrations and chromophoric dissolved organic matter (CDOM) absorption and fluorescence (FDOM) properties were studied in conjunction with biophysical properties during austral summer. Elevated values of both DOC (mean 47.82 ± 5.70 μM) and CDOM (absorption coefficient at 325 nm, acdom325: mean 0.31 ± 0.18 m–1) observed in the upper shelf waters in the southwest (SW), north of the Ross Ice Shelf (RIS), the northwest and along a transect inward of the shelf …

Shape-Based Classification Of Partially Observed Curves, With Applications To Anthropology, Gregory J. Matthews, Karthik Bharath, Sebastian Kurtek, Juliet K. Brophy, George K. Thiruvathukal, Ofer Harel

Faculty Publications

We consider the problem of classifying curves when they are observed only partially on their parameter domains. We propose computational methods for (i) completion of partially observed curves; (ii) assessment of completion variability through a nonparametric multiple imputation procedure; (iii) development of nearest neighbor classifiers compatible with the completion techniques. Our contributions are founded on exploiting the geometric notion of shape of a curve, defined as those aspects of a curve that remain unchanged under translations, rotations and reparameterizations. Explicit incorporation of shape information into the computational methods plays the dual role of limiting the set of all possible completions …

Transcriptomic Analysis Reveals That Municipal Wastewater Effluent Enhances Vibrio Vulnificus Growth And Virulence Potential, Karlen Enid Correa Velez, Robert Sean Norman

Faculty Publications

Vibrio vulnificusis an opportunistic pathogen indigenous to estuarine and marine environments and associated with aquatic organisms. Vibrio vulnificusis of utmost importance because it causes 95% of the seafood-related deaths in the United States due to rapid progression of septicemia. Changes in environmental parameters associated with climate change and coastal population expansion are altering geographical constraints, resulting in increased Vibrio spread, exposure, and rates of infection. In addition, coastal population expansion is resulting in increased input of treated municipal sewage into areas that are also experiencing increased Vibrio proliferation. This study aimed to better understand the influence of treated …

Searching For Solar Kdar With Dune, The Dune Collaboration, A. Abed Abud, B. Abi, R. Acciarri, M. A. Acero, M. R. Adames, G. Adamov, D. Adams, M. Adinolfi, A. Aduszkiewicz, J. Aguilar, Z. Ahmad, J. Ahmed, B. Ali-Mohammadzadeh, T. Alion, K. Allison, S. Alonso Monsalve, M. Alrashed, C. Alt, A. Alton, Roberto Petti, Sanjib R. Mishra Ph.D., Et. Al.

Faculty Publications

The observation of 236 MeV muon neutrinos from kaon-decay-at-rest (KDAR) originating in the core of the Sun would provide a unique signature of dark matter annihilation. Since excellent angle and energy reconstruction are necessary to detect this monoenergetic, directional neutrino flux, DUNE with its vast volume and reconstruction capabilities, is a promising candidate for a KDAR neutrino search. In this work, we evaluate the proposed KDAR neutrino search strategies by realistically modeling both neutrino-nucleus interactions and the response of DUNE. We find that, although reconstruction of the neutrino energy and direction is difficult with current techniques in the relevant energy …

Vowel Pronunciation As An Ethnic Marker: Pacific Islander Teens In Utah, Lisa M. Johnson

Faculty Publications

Despite the growing numbers and visibility of Native Hawaiians and other Pacific Islanders (NHPIs) in the U.S., these Americans are generally overlooked in the research on language variation. American dialectology tends to focus on speakers of European descent, and most research on minority ethno-racial groups has concentrated on larger demographic groups, such as African American and Latinx American groups. This combination of research deficits limits our understanding of linguistic variation and the social forces that influence it. In addition, it may reinforce stereotypes of “ethnolects” as nonstandard and wholly separate from regional and stylistic influence. (See Eckert, 2008.) Many of …

Regularized Heuristic Method For Activation Monitor Neutron Spectrum Unfolding, Nicholas J. Quartemont, James E. Bevins

Faculty Publications

his paper describes an activation foil measurement based neutron flux unfolding method utilizing a heuristic optimization approach. A regularization parameter based on the differential neutron flux was introduced into the optimization cost function to remove large nonphysical oscillations in the unfolded neutron energy spectrum. The procedure was completed for two example case studies ranging from thermal energies up to 20 MeV demonstrating recovery of neutron flux energy information on radiation environments where a model was partially missing or there was a discrepancy in a reaction channel. The unfolded results provided a distribution of unfolded spectra that conformed to the activation …

A Contextualization Of Editorial Misconduct In The Library And Information Science Academic Information Ecosystem, Lucy Santos Green, Melissa P. Johnston

Faculty Publications

In the last decade, one of the most effective tools applied in combating the erosion of public trust in academic research has been an increased level of transparency in the peer review and editorial process. Publicly available publication ethics guidelines and policies are vital in creating a transparent process that prevents unethical research, publication misconduct, manipulation of the communication of research to practitioners, and the erosion of public trust. This study investigated how these unethical practices, specifically those coded as editorial misconduct, bring the authenticity and integrity of the library and information science academic research digital record into question. Employing …

Parameter Estimation And Application Of Anisotropic Yield Criteria For Cylindrical Aluminum Extrusions: Theoretical Developments And Stereodic Measurements, Farzana Yasmeen, Michael A. Sutton, Xiaomin Deng, Megan Ryan, Anthony P. Reynolds

Faculty Publications

Theoretical and experimental studies are presented to characterize the anisotropic plastic response under torsion loading of two nominally identical aluminum Al6061-T6 extruded round bars. Theoretical models are developed using isotropic (Von Mises 1913) and anisotropic (Barlat 1991) yield criteria, along with isotropic strain hardening formulae, to model post-yield behavior under simple torsion loading. For the case of simple shear loading, incremental plasticity theory is used to determine the theoretical elastic, plastic, and total shear strains. A set of experiments are performed to calibrate Barlat’s 1991 yield function. Several specimens are extracted at different orientations to the longitudinal direction of each …