Digital Commons Network^™

Genes Related To Redox And Cell Curvature Facilitate Interactions Between Caulobacter Strains And Arabidopsis, Louis Berrios, Bert Ely

Faculty Publications

Bacteria play an integral role in shaping plant growth and development. However, the genetic factors that facilitate plant-bacteria interactions remain largely unknown. Here, we demonstrated the importance of two bacterial genetic factors that facilitate the interactions between plant-growth-promoting (PGP) bacteria in the genus Caulobacter and the host plant Arabidopsis. Using homologous recombination, we disrupted the cytochrome ubiquinol oxidase (cyo) operon in both C. vibrioides CB13 and C. segnis TK0059 by knocking out the expression of cyoB (critical subunit of the cyo operon) and showed that the mutant strains were unable to enhance the growth of …

Black Space Versus Blue Space: A Proposed Dichotomy Of Future Space Operations, Robert A. Bettinger, Carl A. Poole

Faculty Publications

This article will examine the proposed space operations structure by first outlining the historical foundations for differences in maritime and air domain military capabilities, specifically brown-w­ater versus blue-w­ater navies, and “local/ regional” versus “global” airpower. Next, the article will present the concept of black space and blue space in terms of an environment-­specific definition, as well as an examination of the technical capability requirements, mission types, and national prestige and geopolitical considerations underpinning the proposed operation types. Finally, the article will explore how the USSF might support future space exploration within the black-­space and blue-s­pace operations structure.

Discursive Power And Resistance In The Information Worlds Maps Of Lgbtqia+ Community Leaders, Vanessa Kitzie, Travis L. Wagner, Alexander N. Vera

Faculty Publications

Purpose: This qualitative study explores how discursive power shapes South Carolina LGBTQIA+ communities' health information practices and how participants resist this power. Design/methodology/approach: Twenty-eight LGBTQIA+ community leaders from South Carolina engaged in semi-structured interviews and information worlds mapping – a participatory arts-based elicitation technique – to capture the context underlying how they and their communities create, seek, use, and share health information. We focus on the information worlds maps for this paper, employing situational analysis – a discourse analytic method for visual data – to analyze them. Findings: Six themes emerged describing how discursive power operates both within and outside …

Twisted Spatiotemporal Optical Vortex Random Fields, Milo W. Hyde Iv

Faculty Publications

We present twisted spatiotemporal optical vortex (STOV) beams, which are partially coherent light sources that possess a coherent optical vortex and a random twist coupling their space and time dimensions. These beams have controllable partial coherence and transverse orbital angular momentum (OAM), which distinguishes them from the more common spatial vortex and twisted beams (known to carry longitudinal OAM) in the literature and should ultimately make them useful in applications such as optical communications and optical tweezing. We present the mathematical analysis of twisted STOV beams, deriving the mutual coherence function and linear and angular momentum densities. We simulate the …

What Is Refractory Organic Matter In The Ocean?, Federico Baltar, Xosé A. Alvarez-Salgado, Javier Arístegui, Ronald Benner, Dennis A. Hansell, Gerhard J. Herndl, Christian Lønborg

Faculty Publications

About 20% of the organic carbon produced in the sunlit surface ocean is transported into the ocean’s interior as dissolved, suspended and sinking particles to be mineralized and sequestered as dissolved inorganic carbon (DIC), sedimentary particulate organic carbon (POC) or “refractory” dissolved organic carbon (rDOC). Recently, the physical and biological mechanisms associated with the particle pumps have been revisited, suggesting that accepted fluxes might be severely underestimated (Boyd et al., 2019; Buesseler et al., 2020). Perhaps even more poorly understood are the mechanisms driving rDOC production and its potential accumulation in the ocean. On the basis of …

Ion Gnss Software-Defined Radio Metadata Standard, Sanjeev Gunawardena, Thomas Pany, James Curran

Faculty Publications

The past several years have seen a proliferation of software‐defined radio (SDR) data collection systems and processing platforms designed for or applicable to satellite navigation (satnav) applications. These systems necessarily produce datasets in a wide range of different formats. To correctly interpret this SDR data, essential information such as the packed sample format and sampling rate is needed. Communicating this metadata between creators and users has historically been an ad‐hoc, cumbersome, and error‐prone process. To address this issue, the satnav SDR community developed a metadata standard and normative software library to automate this process, thus simplifying the exchange of datasets …

Restorative Justice And The School-To-Prison Pipeline: A Review Of Existing Literature, Hani Morgan

Faculty Publications

Black students experience out-of-school suspensions at a higher rate than other students. The higher rate at which these students are suspended is believed to contribute to a school-to-prison pipeline. This review article is designed to enhance the understanding of this problem by focusing on the factors that play a part in the school-to-prison pipeline. A purposeful sample of recently published literature by some of the leading scholars in this area was selected for analysis. Some studies indicate that school personnel may be biased in the ways they respond to Black students. The lack of teacher preparation and support has been …

Feasibility Of Integrating Survivors Of Stroke Into Cardiac Rehabilitation: A Mixed Methods Pilot Study, Elizabeth W. Regan, Reed Handlery, Jill C. Stewart, Joseph Lee Pearson Ms,Drph, Sara Wilcox Ph.D., Stacy Fritz

Faculty Publications

Background Survivors of stroke are often deconditioned and have limited opportunities for exercise post-rehabilitation. Cardiac Rehabilitation (CR), a structured exercise program offered post-cardiac event in the United States (U.S.), may provide an opportunity for continued exercise.

The purpose of this study was to examine the feasibility of integrating survivors of stroke into an existing, hospital-based CR program through an assessment of (1) recruitment, uptake and retention, (2) adherence and fidelity, (3) acceptability and (4) safety.

Methods A mixed methods design combined a single group, pre-post design, pilot feasibility study with an imbedded qualitative inquiry. Survivors of stroke were recruited into …

“When They Say Weed Causes Depression, But It’S Your Fav Antidepressant”: Knowledge-Aware Attention Framework For Relationship Extraction, Shweta Yadav, Usha Lokala, Raminta Daniulaityte, Krishnaprasad Thirunarayan, Francois Lamy, Amit P. Sheth

Faculty Publications

With the increasing legalization of medical and recreational use of cannabis, more research is needed to understand the association between depression and consumer behavior related to cannabis consumption. Big social media data has potential to provide deeper insights about these associations to public health analysts. In this interdisciplinary study, we demonstrate the value of incorporating domain-specific knowledge in the learning process to identify the relationships between cannabis use and depression. We develop an end-to-end knowledge infused deep learning framework (Gated-K-BERT) that leverages the pre-trained BERT language representation model and domain-specific declarative knowledge source (Drug Abuse Ontology) to jointly extract entities …

The Family That Hiked Together, Kermit Netteburg

Faculty Publications

No abstract provided.

Using Multiple Ecological Models To Inform Environmental Decision-Making, Kristy A. Lewis, Kenneth A. Rose, Kim De Mutsert, Shaye Sable, Cameron Ainsworth, Damian C. Brady, Howard Townsend

Faculty Publications

Coastal ecosystems are experiencing degradation from compound impacts of climate change and multiple anthropogenic disturbances. These pressures often act synergistically and complicate designing effective conservation measures; consequently, large-scale coastal restoration actions become a wicked problem. The purpose of this study was to use two different food web models in a coordinated manner to inform resource managers in their assessment of the ecological effects of a large-scale marsh restoration project. A team was formed that included the model developers and outside scientists, who were asked to use available model results of the calibrated simulations of an Ecopath with Ecosim (EwE) model …

A Modular System For Treating Moving Anatomical Targets With Scanned Ion Beams At Multiple Facilities: Pre-Clinical Testing For Quality And Safety Of Beam Delivery, Michelle Lis, Wayne Newhauser, Marco Donetti, Moritz Wolf, Timo Steinsberger, Athena Paz, Marco Durante, Christian Graeff

Faculty Publications

Background: Quality management and safety are integral to modern radiotherapy. New radiotherapy technologies require new consensus guidelines on quality and safety. Established analysis strategies, such as the failure modes and effects analysis (FMEA) and incident learning systems have been developed as tools to assess the safety of several types of radiation therapies. An extensive literature documents the widespread application of risk analysis methods to photon radiation therapy. Relatively little attention has been paid to performing risk analyses of nascent radiation therapy systems to treat moving tumors with scanned heavy ion beams. The purpose of this study was to apply a …

Mining Open Government Data For Business Intelligence Using Data Visualization: A Two-Industry Case Study, Anne Gottfried, Caroline Hartmann, Donald Yates

Faculty Publications

The business intelligence (BI) market has grown at a tremendous rate in the past decade due to technological advancements, big data and the availability of open source content. Despite this growth, the use of open government data (OGD) as a source of information is very limited among the private sector due to a lack of knowledge as to its benefits. Scant evidence on the use of OGD by private organizations suggests that it can lead to the creation of innovative ideas as well as assist in making better informed decisions. Given the benefits but lack of use of OGD to …

Public Opinion Regarding Government Response To Covid-19: Case Study Of A Large Commercial City In Nigeria, Ismaeel Yunusa Ph.D., Sorochi Iloanusi, Osaro Mgbere, Nchebe-Jah Raymond Iloanusi, Anthony Idowu Ajayi, Ekere James Essien

Faculty Publications

Introduction: government measures to contain the COVID-19 pandemic cannot be effective without widespread compliance by the public. A greater understanding of citizens' perceptions of these measures can help government agencies adapt their strategies to boost compliance. We examined citizens' perceptions of government's measures to contain the COVID-19 pandemic and its implications on compliance using data from Onitsha city, Anambra State Nigeria.

Methods: data was obtained through in-person interviews of 140 consenting adults in March 2020. Descriptive and inferential statistics were used to summarize the data.

Results: most participants (84.7%) doubted government's ability to manage the COVID-19 outbreak, raising concerns about …

Relationship Between Diet Quality Scores And The Risk Of Frailty And Mortality In Adults Across A Wide Age Spectrum, Kulapong Jayanama, Olga Theou, Judith Godin, Leah Cahill, Nitin Shivappa Mbbs, Mph, Ph.D., James Hébert, Michael David Wirth Msph, Phd, Yong-Moon Park, Teresa T. Fung, Kenneth Rockwood

Faculty Publications

Background

Beyond intakes of total energy and individual nutrient, eating patterns may influence health, and thereby the risk of adverse outcomes. How different diet measures relate to frailty—a general measure of increased vulnerability to unfavorable health outcomes—and mortality risk, and how this might vary across the life course, is not known. We investigated the associations of five dietary indices (Nutrition Index (NI), the energy-density Dietary Inflammatory Index (E-DII™), Healthy Eating Index-2015 (HEI-2015), Mediterranean Diet Score (MDS), and Dietary Approaches to Stop Hypertension (DASH)) with frailty and mortality.

Methods

We included 15,249 participants aged ≥ 20 years from the 2007–2012 cohorts …

Coastlines, Coastal Cities, And Climate Change: A Perspective On Urgent Research Needs In The United States, Paul A. Sandifer, Geoffrey I. Scott Ph.D.

Faculty Publications

This paper builds upon Friedman et al. (2020) and other reviews and statements but provides an explicit focus on research needed to improve the resilience and survivability of coastal communities as they face existential threats from climate change. It does not attempt a prescriptive analysis of potential research emphases, but instead recommends some key research areas that we believe will help provide a solid foundation for community adaptation. Our perspective is based on our experiences over a combined nearly 95 years of work in research, management, and policy, much of it related to coastal environments and their communities, rather than …

The More Things Change, The More They Stay The Same: The Queensland Police Service As A Model For Sustainable Policing Reform, Geoffrey P. Alpert, Kyle Mclean

Faculty Publications

Police departments are consistently challenged to serve their communities by reducing misconduct and being held accountable. In the United States, policing reform is best described as déjà vu or Groundhog Day, with high-profile groups organising every few years to list the same recommendations for improving the police. Additionally, reform suggestions are too often countered by the comment, “we have always done it this way.” By stark contrast, through the Fitzgerald Inquiry and the work of scholars such as David Bayley, the Queensland Police Service stands as a model for creating sustainable change in policing. In this paper, we compare the …

An Automated Tool For Comparing Phonetic Transcriptions, Dallin J. Bailey, Marisha Speights Atkins, Ishaan Mishra, Sicheng Li, Yaoxuan Luan, Cheryl Seals

Faculty Publications

Many computerized tools for comparing phonetic transcriptions have been proposed and shared in the past; however, previous tools are relatively difficult to access and incorporate into clinical and research practice, or require users to learn additional phonetic symbol systems. The purpose of this project was to develop and test a readily available web-based application for quantitatively comparing phonetic transcriptions that are input using International Phonetic Alphabet (IPA) symbols. A web-based computer application was developed to allow for IPA phonetic transcription comparison. A point-and-click keyboard was developed to provide support for character input of the full IPA, as well as most …

Effects Of Background Noise On Speech And Language In Young Adults, Tyson G. Harmon, Christopher Dromey, Brenna Nelson, Kacy Chapman

Faculty Publications

Purpose: To investigate how different types of background noise that differ in their level of linguistic content affect speech acoustics, speech fluency, and language production for young adult speakers when performing a monologue discourse task.

Method: Forty young adults monologued by responding to open ended questions in a silent baseline and five background noise conditions (debate, movie dialogue, contemporary music, classical music, pink noise). Measures related to speech acoustics (intensity and frequency), speech fluency (speech rate, pausing, and disfluencies), and language production (lexical, morphosyntactic, and macro-linguistic structure) were analyzed and compared across conditions. Participants also reported on which conditions they …

Finances, Depressive Symptoms, Destructive Conflict, And Coparenting Among Lower-Income, Unmarried Couples: A Two-Wave, Cross-Lagged Analysis, Melissa A. Curran, Xiaomin Li, Melissa Barnett, Olena Kopstynska, Alexa B. Chandler, Ashley B. Lebaron

Faculty Publications

Following from an adapted family stress model (FSM), we used two-wave, secondary data from the Building Strong Families project, focusing on 4,424 primarily lower-income, unmarried couples expecting their first child together. We used cross-lagged analyses to test the directionality of the associations among financial difficulties, depressive symptoms, destructive interparental conflict, and coparenting alliance for both fathers and mothers when children were 15 and 36 months old. Two of the three hypotheses provided support for the FSM. First, destructive conflict predicted coparenting alliance (but not the reverse). Specifically, higher destructive conflict at 15 months for both fathers and mothers predicted lower …

Assessing Determinants Of Continuance Intention Towards Personal Cloud Services: Extending Utaut2 With Technology Readiness, Shih Chih Chen, Shing Han Li, Shih Chi Liu, David C. Yen, Athapol Ruangkanjanases

Faculty Publications

In addition to the rapid development of global information and communications technology (ICT) and the Internet, recent rapid growth in cloud computing technology represents another important trend. Individual continuance intention towards information technology is a critical area in which information systems research can be performed. This study aims to develop an integrated model designed to explain and predict an individual’s continuance intention towards personal cloud services based on the concepts of technology readiness (TR) and the unified theory of acceptance and use of technology 2 (UTAUT2), moderated by gender, age, and experience of personal cloud services. The key results of …

A State-Dependent Approximation Method For Estimating Truck Queue Length At Marine Terminals, Wenrui Qu, Tao Tao, Bo Xie, Yi Qi

Faculty Publications

As international trade and freight volumes increase, there is a growing port congestion problem, leading to the long truck queues at US marine terminal gates. To address this problem, some countermeasures have been proposed and implemented for reducing truck queue length at marine terminals. To assess the effectiveness of these countermeasures, a method for accurately estimating terminal gate truck queue length is needed. This study developed a new method, named the state-dependent approximation method, for estimating the truck queue length at marine terminals. Based on the simulation of the truck queuing system, it was found that it takes several hours …

Food Insecurity And Food Access During Covid-19 In The San Francisco Bay Area, Giselle Pignotti, Marcelle Dougan, Iris Tablas-Mejia, Adriana Telias, Ashnee Gounden

Faculty Publications

The coronavirus (COVID-19) pandemic impacted socio-economic stability and food systems in the U.S. and worldwide. To better understand food access challenges and needs of those significantly impacted by the pandemic, an online survey was distributed in the San Francisco Bay Area from August to November of 2020. A total of 726 participants completed the survey who were recruited through paid Facebook ads and community partners outreach. This report features key results from the survey regarding changes in food security rates, food access challenges, and coping strategies used during the pandemic. Some of the key findings include: 1) There was a …

Preparedness, Planning, And Advances In Operational Response, David G. Westerholm, Cameron H. Ainsworth, Christopher H. Barker, Peter G. Brewer, John W. Farrington, Dubravko Justić, Vassiliki H. Kourafalou, Steven A. Murawski, John G. Shepherd, Helena M. Solo-Gabriele

Faculty Publications

During the last 50 years, the numbers and sizes of oil spills have been significantly reduced through prevention. But spills still occur, and it is critical to prepare for these events through planning and exercises. Operational decisions are designed to expedite cleanup and minimize overall impacts, yet they often involve complex tradeoffs between a multitude of competing interests. It is imperative to apply the best technology and science when events occur. However, while planning and response tactics have evolved over time, determining what may be most at risk is often confounded by sparse background data, modeling limitations, scalability, or research …

Three-Dimensional Analysis Of The Effect Of Human Movement On Indoor Airflow Patterns, Arup Bhattacharya, Jovan Pantelic, Ali Ghahramani, Ehsan S. Mousavi

Faculty Publications

Human activity is known to leave significant effects on indoor airflow patterns. These patterns are carefully designed for many facilities such as cleanrooms, pharmaceutical settings, and healthcare environments, where human-induced wakes contribute to the transport of contaminants. Therefore, the knowledge about these wakes as it relates to indoor air quality is critical. As a result, a series of experiments were conducted in a controlled chamber to study the three-dimensional effects of true human walking on airflow. Experiments were designed to capture the effect of human walking under three different flow conditions, and for two different walking schemes. The results show …

Eight Strategies That Enhance Legal Writing, Douglas E. Abrams

Faculty Publications

A few years ago, I spoke about legal writing at an annual forum of Missouri’s appellate judges, held at the University of Missouri School of Law in Columbia. The hour-long presentation advanced eight strategies that enable judges and practicing lawyers to sharpen their writing. These eight strategies appear below in this article.

A Light In Students’ Lives: K-12 Teachers’ Experiences (Re)Building Caring Relationships During Remote Learning, Karyn E. Miller

Faculty Publications

This study illuminates the experiences of K-12 educators as they strove to (re)build caring relationships with students during the COVID-19 pandemic. The study was conducted during a graduate course for experienced K-12 teachers in the spring of 2020 at a four-year comprehensive university in the United States. Data was collected from reflective learning journals and asynchronous peer discussions, which captured educators’ experiences as they transitioned to remote learning in real-time. Qualitative content analysis was used to identify pertinent themes. Findings suggest that remote learning revealed relationships in need of repair. Educators practiced authentic care and cultivated connectedness by (a) acting …

A Reporting Format For Leaf-Level Gas Exchange Data And Metadata, Kim S. Ely, Alistair Rogers, Deborah A. Agarwal, Elizabeth A. Ainsworth, Loren P. Albert, Ashehad Ali, Jeremiah Anderson, Michael J. Aspinwall, Chandra Bellasio, Carl Bernacchi, Steve Bonnage, Thomas N. Buckley, James Bunce, Angela C. Burnett, Florian A. Busch, Amanda Cavanagh, Lucas A. Cernusak, Robert Crystal-Ornelas, Joan Damerow, Kenneth J. Davidson, Martin G. De Kauwe, Michael C. Dietze, Tomas F. Domingues, Mirindi Eric Dusenge, David S. Ellsworth, John R. Evans, Paul P.G. Gauthier, Bruno O. Gimenez, Elizabeth P. Gordon, Christopher M. Gough, Aud H. Halbritter, David T. Hanson, Mary Heskel, J. Aaron Hogan, Jason R. Hupp, Kolby Jardine, Jens Kattge, Trevor Keenan, Johannes Kromdijk, Dushan P. Kumarathunge, Julien Lamour, Andrew D.B. Leakey, David S. Lebauer, Qianyu Li, Marjorie R. Lundgren, Nate Mcdowell, Katherine Meacham-Hensold, Belinda E. Medlyn, David J.P. Moore, Robinson Negrón-Juárez, Ülo Niinemets, Colin P. Osborne, Alexandria L. Pivovaroff, Hendrik Poorter, Sasha C. Reed, Youngryel Ryu, Alvaro Sanz-Saez, Stephanie C. Schmiege, Shawn P. Serbin, Thomas D. Sharkey, Martijn Slot, Nicholas G. Smith, Balasaheb V. Sonawane, Paul F. South, Daisy C. Souza, Joseph Ronald Stinziano, Ellen Stuart-Haëntjens, Samuel H. Taylor, Mauricio D. Tejera, Johan Uddling, Vigdis Vandvik, Charuleka Varadharajan, Anthony P. Walker, Berkley J. Walker, Jeffrey M. Warren, Danielle A. Way, Brett T. Wolfe, Jin Wu, Stan D. Wullschleger, Chonggang Xu, Zhengbing Yan, Dedi Yang

Faculty Publications

© 2021 The Authors Leaf-level gas exchange data support the mechanistic understanding of plant fluxes of carbon and water. These fluxes inform our understanding of ecosystem function, are an important constraint on parameterization of terrestrial biosphere models, are necessary to understand the response of plants to global environmental change, and are integral to efforts to improve crop production. Collection of these data using gas analyzers can be both technically challenging and time consuming, and individual studies generally focus on a small range of species, restricted time periods, or limited geographic regions. The high value of these data is exemplified by …

A Facility For The Research, Development, And Translation Of Advanced Technologies For Ion-Beam Therapies, M. Lis, W. Newhauser, M. Donetti, M. Durante, U. Weber, B. Zipfel, C. Hartmann-Sauter, M. Wolf, C. Graeff

Faculty Publications

This article describes the updated GSI radiotherapy research facility (Cave M) located at the GSI Helmholtz Center for Heavy Ion Research in Darmstadt, Germany. This facility was upgraded by modernizing the beamline that supported a pilot project in carbon ion cancer therapy in Europe from 1997 to 2008. Descriptions are provided of the modernized beamline, related hardware components and treatment delivery system. The performance specifications and general characteristics for each major component are described, along with example pre-clinical test results of selected components. These upgrades to Cave M allow for investigating novel therapy methods. The radiotherapy research facility is located …

Spatial Mode Correction Of Single Photons Using Machine Learning, Narayan Bhusal, Sanjaya Lohani, Chenglong You, Mingyuan Hong, Joshua Fabre, Pengcheng Zhao, Erin M. Knutson, Ryan T. Glasser, Omar S. Magaña-Loaiza

Faculty Publications

Spatial modes of light constitute valuable resources for a variety of quantum technologies ranging from quantum communication and quantum imaging to remote sensing. Nevertheless, their vulnerabilities to phase distortions, induced by random media, impose significant limitations on the realistic implementation of numerous quantum-photonic technologies. Unfortunately, this problem is exacerbated at the single-photon level. Over the last two decades, this challenging problem has been tackled through conventional schemes that utilize optical nonlinearities, quantum correlations, and adaptive optics. In this article, the self-learning and self-evolving features of artificial neural networks are exploited to correct the complex spatial profile of distorted Laguerre–Gaussian modes …