Digital Commons Network^™

Clathrin-Mediated Endocytosis Facilitates The Internalization Of Magnaporthe Oryzae Effectors Into Rice Cells, Ely Oliveira-Garcia, Tej Man Tamang, Jungeun Park, Melinda Dalby, Magdalena Martin-Urdiroz, Clara Rodriguez Herrero, An Hong Vu, Sunghun Park, Nicholas J. Talbot, Barbara Valent

Faculty Publications

Fungi and oomycetes deliver effectors into living plant cells to suppress defenses and control plant processes needed for infection. Little is known about the mechanism by which these pathogens translocate effector proteins across the plasma membrane into the plant cytoplasm. The blast fungus Magnaporthe oryzae secretes cytoplasmic effectors into a specialized biotrophic interfacial complex (BIC) before translocation. Here, we show that cytoplasmic effectors within BICs are packaged into punctate membranous effector compartments that are occasionally observed in the host cytoplasm. Live cell imaging with fluorescently labeled proteins in rice (Oryza sativa) showed that these effector puncta colocalize with the plant …

A Modified-Herringbone Micromixer For Assessing Zebrafish Sperm (Mags), Jorge A. Belgodere, Mustafa Alam, Valentino E. Browning, Jason Eades, Jack North, Julie A. Armand, Yue Liu, Terrence R. Tiersch, W. Todd Monroe

Faculty Publications

Sperm motility analysis of aquatic model species is important yet challenging due to the small sample volume, the necessity to activate with water, and the short duration of motility. To achieve standardization of sperm activation, microfluidic mixers have shown improved reproducibility over activation by hand, but challenges remain in optimizing and simplifying the use of these microdevices for greater adoption. The device described herein incorporates a novel micromixer geometry that aligns two sperm inlet streams with modified herringbone structures that split and recombine the sample at a 1:6 dilution with water to achieve rapid and consistent initiation of motility. The …

Long-Term Capture Data Uncover Shifts In The Daily Activity Patterns Of Amazonian Birds, Cameron L. Rutt, Philip C. Stouffer, Bruna R. Amaral, David A. Luther

Faculty Publications

Although the duration of biological rhythms varies from milliseconds to decades, daily cycles are especially widespread for individual organisms. These circadian rhythms are synchronized by light–dark cycles, which govern predictable changes in other microclimate variables. Despite the fixed, regular nature of these abiotic cycles at low latitudes, little is known about how different animals structure activity along these gradients. We used 25 years of capture–recapture data and ~ 25 000 unique captures to characterize ‘activity' (time of capture) for 65 species of Amazonian birds in the lowest forest stratum (0–2.5 m). To quantify vertical niche breadths, we also measured foraging …

Gene Editing Provides A Tool To Investigate Genes Involved In Reproduction Of Pigs, Rodney D. Geisert, Destiny N. Johns, Caroline A. Pfeiffer, Riley M. Sullivan, Caroline G. Lucas, Constantine A. Simintiras, Bethany K. Redel, Kevin D. Wells, Thomas E. Spencer, Randall S. Prather

Faculty Publications

CRISPR-Cas9 gene editing technology provides a method to generate loss-of-function studies to investigate, in vivo, the specific role of specific genes in regulation of reproduction. With proper design and selection of guide RNAs (gRNA) designed to specifically target genes, CRISPR-Cas9 gene editing allows investigation of factors proposed to regulate biological pathways involved with establishment and maintenance of pregnancy. The advantages and disadvantages of using the current gene editing technology in a large farm species is discussed. CRISPR-Cas9 gene editing of porcine conceptuses has generated new perspectives for the regulation of endometrial function during the establishment of pregnancy. The delicate orchestration …

Medical Libraries And Their Complicated Past: An Exploration Of The Historical Connections Between Medical Collections And Racial Science, Raymond Pun, Patrice R. Green, Nicollette Davis

Faculty Publications

For over a millennium, libraries and library workers have advanced the knowledge of human science by building, preserving, and sharing collections and research. Historically, libraries have also aligned their institutional responsibilities to adhere to and support the values and virtues of oppressive and colonial practices. Library history has shown the mistreatments and denials of information access of marginalized groups. The history of libraries in the health and medical sciences reveals how these institutions and their workers have preserved and circulated research studies perpetuating racial science. This commentary highlights how such institutions shape and contribute to racial science in the field …

Multi-Functional Boron-Delivery Agents For Boron Neutron Capture Therapy Of Cancers, Sebastian O. Oloo, Kevin M. Smith, Maria Da Graça H. Vicente

Faculty Publications

Boron neutron capture therapy (BNCT) is a binary cancer treatment that involves the irradiation of ¹⁰B-containing tumors with low-energy neutrons (thermal or epithermal). The alpha particles and recoiling Li nuclei that are produced in the ¹⁰B-capture nuclear reaction are high-linear-energy transfer particles that destroy boron-loaded tumor cells; therefore, BNCT has the potential to be a localized therapeutic modality. Two boron-delivery agents have been used in clinical trials of BNCT in patients with malignant brain tumors, cutaneous melanoma, or recurrent tumors of the head and neck region, demonstrating the potential of BNCT in the treatment of difficult cancers. A …

Population-Specific Responses In Eastern Oysters Exposed To Low Salinity In The Northern Gulf Of Mexico, Kyle A. Sirovy, Sandra M. Casas, Jerome F. La Peyre, Morgan W. Kelly

Faculty Publications

Eastern oysters, Crassostrea virginica, are facing rapid environmental changes in the northern Gulf of Mexico and can respond to these changes via plasticity or evolution. Plastic responses can immediately buffer against environmental changes, although this buffering may impact the organism’s ability to evolve in subsequent generations. While plasticity and evolution are not mutually exclusive, the relative contribution and interaction between them remains unclear. In this study, we investigated the roles of plastic and evolved responses of C. virginica acclimated to low salinity using a common garden experiment with four populations exposed to two salinities. We used three transcriptomic analyses (edgeR, …

Effects Of Atlantic Butterfish (Peprilus Triacanthus) In Diets Of Common Terns (Sterna Hirundo): A Case Study Of Climate Change Effects In The Gulf Of Maine, Olivia A. Smith, Elizabeth C. Craig

Faculty Publications

Climate change and associated shifts in marine prey communities can alter food availability for foraging seabirds. This issue is illustrated in the Gulf of Maine by the northward shift of Atlantic butterfish (Peprilus triacanthus; hereafter butterfish) and their subsequent increase in seabird diets. Here, we examine effects of butterfish in diets of the Common Tern (Sterna hirundo), a threatened species in this region. Our objectives were to evaluate butterfish suitability for tern chick diet through observing handling time and feeding success, to examine effects of butterfish on tern chick growth, and to explore signs of adaptive foraging in adults. The …

Three-Dimensional Scaffolds For Bone Tissue Engineering, Harish Chinnasami, Mohan Kumar Dey, Ram Devireddy

Faculty Publications

Immobilization using external or internal splints is a standard and effective procedure to treat minor skeletal fractures. In the case of major skeletal defects caused by extreme trauma, infectious diseases or tumors, the surgical implantation of a bone graft from external sources is required for a complete cure. Practical disadvantages, such as the risk of immune rejection and infection at the implant site, are high in xenografts and allografts. Currently, an autograft from the iliac crest of a patient is considered the “gold standard” method for treating large-scale skeletal defects. However, this method is not an ideal solution due to …

Developing Sustainable Asphalt Mixtures Using High-Density Polyethylene Plastic Waste Material, Ibrahim Elnaml, Jun Liu, Louay N. Mohammad, Nazimuddin Wasiuddin, Samuel B. Cooper, Samuel B. Cooper

Faculty Publications

There is growing interest in sustainable road pavement technologies to protect the environment and provide economic benefits. Post-consumer recycled (PCR) plastics are considered for construction to address the threat of plastic waste materials (PWM) and to improve sustainability. Asphalt pavement construction is highly considered for PWM recycling due to its large daily production. The purpose of this study is to investigate the performance of asphalt mixture containing PWM, specifically high-density polyethylene (HDPE), and compare its performance with two conventional mixtures. Three asphalt mixtures were considered: (1) mixture with asphalt binder PG 76-22 (SBS-modified); (2) mixture with asphalt binder PG 70-22 …

Integrating Lipid Metabolism, Pheromone Production And Perception By Fruitless And Hepatocyte Nuclear Factor 4, Jie Sun, Wen Kan Liu, Calder Ellsworth, Qian Sun, Yufeng Pan, Yi Chun Huang, Wu Min Deng

Faculty Publications

Sexual attraction and perception are crucial for mating and reproductive success. In Drosophila melanogaster, the male-specific isoform of Fruitless (Fru), FruM, is a known master neuro-regulator of innate courtship behavior to control the perception of sex pheromones in sensory neurons. Here, we show that the non-sex-specific Fru isoform (FruCOM) is necessary for pheromone biosynthesis in hepatocyte-like oenocytes for sexual attraction. Loss of FruCOM in oenocytes resulted in adults with reduced levels of cuticular hydrocarbons (CHCs), including sex pheromones, and show altered sexual attraction and reduced cuticular hydrophobicity. We further identify Hepatocyte nuclear factor 4 (Hnf4) as a key target of …

Toward One Health: A Spatial Indicator System To Model The Facilitation Of The Spread Of Zoonotic Diseases, Daniel Jato-Espino, Fernando Mayor-Vitoria, Vanessa Moscardó, Fabio Capra-Ribeiro, Leticia Bartolome Del Pino

Faculty Publications

Recurrent outbreaks of zoonotic infectious diseases highlight the importance of considering the interconnections between human, animal, and environmental health in disease prevention and control. This has given rise to the concept of One Health, which recognizes the interconnectedness of between human and animal health within their ecosystems. As a contribution to the One Health approach, this study aims to develop an indicator system to model the facilitation of the spread of zoonotic diseases. Initially, a literature review was conducted using the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement to identify relevant indicators related to One Health. The …

Empowering Student Success: Unlocking The Potential Of Project-Based Steel Design Education, Aly Mousaad Aly

Faculty Publications

In the pursuit of student success, it is essential to acknowledge that a singular teaching style does not universally cater to all students. The educator's crucial role lies in creating an optimal learning environment that fosters students' endeavors to excel. This endeavor transcends mere classroom success or employment prospects, encompassing a broader impact on societal well-being. An experiential learning approach, where students actively engage in practical tasks, emerges as the most effective mode of instruction. Integrating project-based learning activities into the curriculum holds immense potential for enhancing student learning. Additionally, the utilization of analysis software tools like FTool and STAAD …

Effects Of Fucoidan Supplementation On Inflammatory And Immune Response After High-Intensity Exercise, Bridget A. Mcfadden, Caroline S. Vincenty, Akexa J. Chandler, Harry P. Cintineo, Blaine S. Lints, Gianna F. Mastrofini, Shawn M. Arent Ph.D., Cscs*D, Fissn, Facsm, Fnak

Faculty Publications

Introduction: High-intensity exercise (HIE) can damage the musculotendon complex and impact the immune response, resulting in post-exercise inflammation. Sufficient rest and recovery will improve muscular resilience against future damaging bouts; however, HIE with minimal durations of rest is common in athletic competitions that facilitate persistent inflammation and immune dysregulation. Fucoidans are fucose-rich sulfated polysaccharides with demonstrated anti-inflammatory and pro-immune responses. Fucoidans may improve inflammation and immune responses, which may prove beneficial for individuals who regularly engage in repeated HIE. The research purpose was to investigate the safety and efficacy of fucoidans on inflammatory and immune markers following HIE. Methods: Eight …

Relative Genetic Homogeneity Within A Phenotypically Diverse Group; A Case Of The Lake Tana Labeobarbus (Cyprinidae) Species Flock, Ethiopia, Kebede Beshera

Faculty Publications

The Lake Tana Labeobarbus species flock represents one of the world’s most famous examples of lacustrine species radiations. Previous studies of this group have resulted in the description of at least 15 species based on their differences in functional morphology and definition of two clades (lacustrine and riverine spawning clades) based on life history traits. A total of 166 fish representing 14 Labeobarbus species were genotyped using 10 lineage-specific hexaploid microsatellite loci. Six of these loci were developed for this study based on DNA sequence contigs derived from a microsatellite-enriched genomic library of Labeobarbus intermedius from Lake Tana; the remaining …

Active Colloids As Models, Materials, And Machines, Kyle J.M. Bishop, Sibani Lisa Biswal, Bhuvnesh Bharti

Faculty Publications

Active colloids use energy input at the particle level to propel persistent motion and direct dynamic assemblies. We consider three types of colloids animated by chemical reactions, time-varying magnetic fields, and electric currents. For each type, we review the basic propulsion mechanisms at the particle level and discuss their consequences for collective behaviors in particle ensembles. These microscopic systems provide useful experimental models of nonequilibrium many-body physics in which dissipative currents break time-reversal symmetry. Freed from the constraints of thermodynamic equilibrium, active colloids assemble to form materials that move, reconfigure, heal, and adapt. Colloidal machines based on engineered particles and …

Genome-Wide Coancestry Reveals Details Of Ancient And Recent Male-Driven Reticulation In Baboons, Erik F. Sørensen, R. Alan Harris, Liye Zhang, Muthuswamy Raveendran, Lukas F.K. Kuderna, Jerilyn A. Walker, Jessica M. Storer, Martin Kuhlwilm, Claudia Fontsere, Lakshmi Seshadri, Christina M. Bergey, Andrew S. Burrell, Juraj Bergman, Jane E. Phillips-Conroy, Fekadu Shiferaw, Kenneth L. Chiou, Idrissa S. Chuma, Julius D. Keyyu, Julia Fischer, Marie Claude Gingras, Sejal Salvi, Harshavardhan Doddapaneni, Mikkel H. Schierup, Mark A. Batzer, Clifford J. Jolly, Sascha Knauf, Dietmar Zinner, Kyle K.H. Farh, Tomas Marques-Bonet, Kasper Munch, Christian Roos, Jeffrey Rogers

Faculty Publications

Baboons (genus Papio) are a morphologically and behaviorally diverse clade of catarrhine monkeys that have experienced hybridization between phenotypically and genetically distinct phylogenetic species. We used high-coverage whole-genome sequences from 225 wild baboons representing 19 geographic localities to investigate population genomics and interspecies gene flow. Our analyses provide an expanded picture of evolutionary reticulation among species and reveal patterns of population structure within and among species, including differential admixture among conspecific populations. We describe the first example of a baboon population with a genetic composition that is derived from three distinct lineages. The results reveal processes, both ancient and recent, …

Black Soldier Fly Frass Supports Plant Growth And Reduces Nitrogen Leaching During Coleus Production, Jeffrey Beasley, Jeff Kuehny, Thanos Gentimis, Jeb Fields

Faculty Publications

Industrial insect rearing is expected to increase as a feedstock to meet growing global food demand. This will lead to greater production of insect excreta known as frass, a nutrient-dense organic material that has shown promise as a natural fertilizer source with potential environmental benefits. In this study, black soldier fly (Hermetia illucens) frass (BSFF) was compared with a synthetic fertilizer (SF) during production of containerized ornamentals grown under greenhouse conditions. Fertilizers were incorporated into a bark-based substrate at 0, 0.1, 0.2, or 0.3 kg.m–3 nitrogen (N) planted with coleus (Plectranthus scutellarioides) plugs. Growth index, shoot dry weight, and leaf …

Metal Transport In The Mixing Zone Of An Estuarine River To The Northern Gulf Of Mexico, Zhenwei Wu, Songjie He, Yi Jun Xu

Faculty Publications

To better understand the pollution potential of metals in estuaries heavily concentrated with petrochemical industries, we measured concentrations of total recoverable metals in the lower Calcasieu River in southwestern Louisiana that flows into the northern Gulf of Mexico. Water samples were collected at six sites along the last 88 km reach of the river monthly between May 2013 and November 2015, during which salinity ranged from 0.02 to 29.5 ppt from upstream to downstream. The samples were analyzed for a series of total recoverable metals, including aluminum (Al), arsenic (As), boron (B), cadmium (Cd), calcium (Ca), cobalt (Co), chromium (Cr), …

Effects Of Human And Nonhuman Predation Risk On Antipredator Movement Behaviors Of An Upland Game Bird, Patrick H. Wightman, James A. Martin, Michel T. Kohl, Bret A. Collier, Michael J. Chamberlain

Faculty Publications

Predators elicit antipredator behaviors such as proactive and reactive movements in prey, but both are rarely investigated simultaneously. Impacts of human predation risk on antipredator behaviors can be greater than those of nonhuman predators, resulting in increased effects on populations and community structure. We compared the influence of human and nonhuman predation risk on proactive and reactive antipredator movement behaviors of male Eastern wild turkeys (Meleagris gallopavo, hereafter turkey). We used simultaneously collected GPS locations from 31 turkeys and 36 coyotes (Canis latrans) to investigate the antipredator behavior of turkeys to coyotes. To assess antipredator behaviors of turkeys to hunters, …

Reproductive Asynchrony Within Social Groups Of Female Eastern Wild Turkeys, Erin E. Ulrey, Michael J. Chamberlain, Bret A. Collier

Faculty Publications

Coordination in timing of reproduction is driven by multiple ecological and sociobiological processes for a wide array of species. Eastern wild turkeys (Meleagris gallopavo silvestris) use a male dominance polygynous mating system, where males communicate with females via elaborate courtship displays and vocalizations at display sites. Most females prefer to mate with dominant males; therefore, asynchronous breeding and nesting may occur which can disproportionately influence individual fitness within breeding groups. For female wild turkeys, there are reproductive advantages associated with earlier nesting. As such, we evaluated reproductive asynchrony within and between groups of GPS-tagged female eastern wild turkeys based on …

Indirect Functional Effects Of Neighbors On Food Web Compartments Could Not Overcome Density-Dependent Limited Growth Of A Grazing Minnow, Garrett W. Hopper, Keith B. Gido, Caryn C. Vaughn

Faculty Publications

Ecosystems include diverse taxonomic and functional groups of animals with variable levels of niche overlap that can lead to direct and indirect interactions with positive or negative outcomes. Species feeding at low trophic positions might be sensitive to interactions with co-occurring functional groups (neighbors) that influence their food resources through various processes, such as indirect nutrient subsidies and trophic cascades. Employing a target-neighbor experimental design using large, outdoor mesocosms, we tested whether adding neighbors with different functional traits affected food web compartments relative to a control group that had grazing minnows, Campostoma anomalum (Central Stoneroller). Additionally, we tested whether growth …

A Simple Trail Camera Modification Reveals Red-Bellied Woodpeckers As Important Egg Predators Of Box-Nesting Wood Ducks, Dylan L. Bakner, Kevin M. Ringelman

Faculty Publications

Artificial nesting structures have been used to aid the recovery and maintenance of certain avian populations such as the wood duck (Aix sponsa). The success of nest boxes for wood ducks relies on excluding common nest predators such as raccoons (Procyon lotor) and rat snakes (Pantherophis spp.) via the use of predator guards; however, woodpeckers cannot be excluded. Red-bellied woodpeckers (Melanerpes carolinus) are foraging generalists and have been anecdotally observed preying on wood duck eggs where documenting predation events is difficult to accomplish through traditional nest box monitoring. Here, we used custom-modified trail cameras to document egg depredations and foraging …

Immune Genotypes, Immune Responses, And Survival In A Wild Bird Population, Martha J. Nelson-Flower, Leanne A. Grieves, Jane M. Reid, Ryan R. Germain, Savo Lazic, Sabrina S. Taylor, Elizabeth A. Macdougall-Shackleton, Peter Arcese

Faculty Publications

Individuals vary in their immune genotype, inbreeding coefficient f, immune responses, survival to adulthood, and adult longevity. However, whether immune genes predict survival or longevity, whether such relationships are mediated through immune responses, and how f affects immune genotype remain unclear. We use a wild song sparrow (Melospiza melodia) population in which survival to adulthood, adult longevity, and f were measured precisely, and in which immune responses have previously been assessed. We investigate four toll-like receptor (TLR) and the major histocompatibility complex (MHC) class IIB exon 2 genes. We test whether immune genes predict fitness (survival to adulthood or adult …

Effects Of Yogurt With Carao (Cassia Grandis) On Intestinal Barrier Dysfunction, Α-Glycosidase Activity, Lipase Activity, Hypoglycemic Effect, And Antioxidant Activity, Ricardo S. Aleman, Jhunior Marcia, Ryan Page, Shirin Kazemzadeh Pournaki, Daniel Martín-Vertedor, Víctor Manrique-Fernández, Ismael Montero-Fernández, Kayanush Aryana

Faculty Publications

Cell inflammation disrupts intestinal barrier functions and may cause disorders related to a leaky gut, possibly leading to diabetes. The objective of this study was to determine if carao (Cassia grandis) incorporated into yogurt enhances in vitro intestinal barrier function. To achieve this goal, Caco-2 cells were used as a model of intestinal barrier permeability. Caco-2 cells were treated with cytokines (interleukin-1β, tumor necrosis factor-α, interferon-γ, and lipopolysaccharide (LPS)) and yogurt with carao yogurt (CY) at different doses (1.3 g/L, 2.65 g/L, and 5.3 g/L). Real-time quantitative polymerase chain and immunofluorescence microscopy were applied to evaluate the expression and localization …

Combining Community Observations And Remote Sensing To Examine The Effects Of Roads On Wildfires In The East Siberian Boreal Forest, Vera Kuklina, Oleg Sizov, Victor Bogdanov, Natalia Krasnoshtanova, Arina Morozova, Andrey N. Petrov

Faculty Publications

The paper is aimed at assessing the associations between the road networks geography and dynamics of wildfire events in the East Siberian boreal forest. We examined the relationship between the function of roads, their use, and management and the wildfire ignition, propagation, and termination during the catastrophic fire season of 2016 in the Irkutsk Region of Russia. Document analysis and interviews were utilized to identify main forest users and road infrastructure functional types and examine wildfire management practices. We combined community observations and satellite remotely sensed data to assess relationships between the location, extent, and timing of wildfires and different …

User Guide For Urban Canopy Modeling In Wrf. Version 1.0, Corey L. Smithson, Natalie J. White, Hans R. Klomp, Eric C. Monson, Bradley R. Adams

Faculty Publications

Researchers at Brigham Young University (BYU) have developed this guide for running a WRF simulation using a single layer urban canopy model (UCM). This was developed specifically for the Greater Salt Lake Area but is adaptable to other urban areas. This guide includes information on running WRF simulations to study theoretical urban growth scenarios.

“And God Blessed The Seventh Day And Sanctified It”: The Sabbath At Creation, Dedications, And Christ’S Theophany In 3 Nephi, Dan L. Belnap

Faculty Publications

The Creation narrative, found in various places within the canon of scripture of The Church of Jesus Christ of Latter-day Saints, describes the institution of two different types of time. The first type of time is established in the “fourth day” with the placement of the astronomical bodies, which act as markers “for signs, and for seasons, and for days, and for years”—that is, common time (Genesis 1:14; Moses 2:14). The second type of time is established in the “seventh day,” when the Lord rests from his labors. Situated as it was at the conclusion of the physical creation and …

Misogynoir And The Public Woman: Analog And Digital Sexualization Of Women In Public From The Civil War To The Era Of Kamala Harris, Cecilia Cerja, Nicole D. Nave, Kelly L. Winfrey, Catherine Helen Palczewski, Leslie A. Hahner

Faculty Publications

This essay identifies how the very conception of public woman is infused with the opprobrium hurled against a wanton woman–a sexualized figure who has lost claims to moral standing or social worth. Our analysis begins diachronically by using thin description to trace the historical conflation of public woman in general, and Black woman in particular, with prostitute to outline the contours of the trope of public woman that have solidified across time. We document how the public woman became equated with prostitute, and then how the label prostitute was affixed to women in public to situate them as promiscuous or …

Ten‐Year Cardiovascular Disease Risk Score And Cognitive Function Among Older Adults: The National Health And Nutrition Examination Survey 2011 To 2014, Jingkai Wei, Hanzhang Xu, Angela D. Liese, Anwar T. Nerchant Sc.D, Mph, Dmd, Liang Wang, Chih-Hsiang Yang, Matthew C. Lohman, Monique J. Brown Ph.D., Mph, Tiansheng Wang, Daniela B. Friedman Ph.D.

Faculty Publications

BACKGROUND: The Framingham 10-year cardiovascular disease risk score, which is based on age, sex, smoking, total cholesterol, high-density lipoprotein-cholesterol, blood pressure, and diabetes, has been found to be associated with cognitive health, but these findings have not been validated in a representative sample in the United States. We aimed to examine the associations of Framingham risk score with cognitive function among older adults in a nationally representative sample, as well as by race or ethnicity, education, and family income.

METHODS AND RESULTS: A total of 2254 older adults ≥60years (57% female, 79% non-Hispanic White) in the National Health and Nutrition …