Digital Commons Network^™

Development And Evaluation Of A One-Step Multiplex Real-Time Taqman® Rt-Qpcr Assay For The Detection And Genotyping Of Equine G3 And G14 Rotaviruses In Fecal Samples, Mariano Carossino, Maria E. Barrandeguy, Erdal Erol, Yanqiu Li, Udeni B. R. Balasuriya

Faculty Publications

No abstract provided.

Plant-Mediated Interactions Among Above-Ground And Below-Ground Life Stages Of A Root-Feeding Weevil, Emily C. Kraus, Michael J. Stout

Faculty Publications

© 2019 The Royal Entomological Society 1. Interactions among herbivores mediated by plant responses to herbivore injury may have large impacts on herbivore population densities. Responses may persist for weeks after injury and may affect not only the initial (inducing) herbivore, but also herbivores that are spatially or temporally separated from the initial attacker. 2. In many plant–insect interactions, multiple life stages of the insect may be associated with the same plant, and these various stages may interact indirectly with one another via induced responses. The rice water weevil (RWW), Lissorhoptrus oryzophilus, a serious global pest of rice, is one …

Analysis Of Mrna Abundance For Histone Variants, Histone- And Dna-Modifiers In Bovine In Vivo And In Vitro Oocytes And Embryos, J. Duan, L. Zhu, H. Dong, X. Zheng, Z. Jiang, J. Chen, X. C. Tian

Faculty Publications

© 2019, The Author(s). Transcript abundance of histone variants, modifiers of histone and DNA in bovine in vivo oocytes and embryos were measured as mean transcripts per million (TPM). Six of 14 annotated histone variants, 8 of 52 histone methyl-transferases, 5 of 29 histone de-methylases, 5 of 20 acetyl-transferases, 5 of 19 de-acetylases, 1 of 4 DNA methyl-transferases and 0 of 3 DNA de-methylases were abundant (TPM >50) in at least one stage studied. Overall, oocytes and embryos contained more varieties of mRNAs for histone modification than for DNA. Three expression patterns were identified for histone modifiers: (1) transcription before …

Anti-Viral Immunity In The Tumor Microenvironment: Implications For The Rational Design Of Herpes Simplex Virus Type 1 Oncolytic Virotherapy, Paul J.F. Rider, Ifeanyi K. Uche, Larissa Sweeny, Konstantin G. Kousoulas

Faculty Publications

© 2019, Springer Nature Switzerland AG. Purpose of Review: The design of novel herpes simplex type I (HSV-1)–derived oncolytic virotherapies is a balancing act between safety, immunogenicity, and replicative potential. We have undertaken this review to better understand how these considerations can be incorporated into rational approaches to the design of novel herpesvirus oncolytic virotherapies. Recent Findings: Several recent papers have demonstrated that enhancing the potential of HSV-1 oncolytic viruses to combat anti-viral mechanisms present in the tumor microenvironment leads to greater efficacy than their parental viruses. Summary: It is not entirely clear how the immunosuppressive tumor microenvironment affects oncolytic …

One Week Of Continuous Corticosterone Exposure Impairs Hepatic Metabolic Flexibility, Promotes Islet Β-Cell Proliferation, And Reduces Physical Activity In Male C57bl/6 J Mice, Susan J. Burke, Heidi M. Batdorf, Tai Yu Huang, Joseph W. Jackson, Katarina A. Jones, Thomas M. Martin, Kristen E. Rohli, Michael D. Karlstad, Tim E. Sparer, David H. Burk, Shawn R. Campagna, Robert C. Noland, Paul L. Soto, J. Jason Collier

Faculty Publications

© 2019 Elsevier Ltd Clinical glucocorticoid use, and diseases that produce elevated circulating glucocorticoids, promote drastic changes in body composition and reduction in whole body insulin sensitivity. Because steroid-induced diabetes is the most common form of drug-induced hyperglycemia, we investigated mechanisms underlying the recognized phenotypes associated with glucocorticoid excess. Male C57BL/6 J mice were exposed to either 100ug/mL corticosterone (cort) or vehicle in their drinking water. Body composition measurements revealed an increase in fat mass with drastically reduced lean mass during the first week (i.e., seven days) of cort exposure. Relative to the vehicle control group, mice receiving cort had …

Male Dominance Status Regulates Odor-Evoked Processing In The Forebrain Of A Cichlid Fish, Alexandre A. Nikonov, Karen P. Maruska

Faculty Publications

© 2019, The Author(s). The ability to identify odors in the environment is crucial for survival and reproduction. However, whether olfactory processing in higher-order brain centers is influenced by an animal’s physiological condition is unknown. We used in vivo neuron and local field potential (LFP) recordings from the ventral telencephalon of dominant and subordinate male cichlids to test the hypothesis that response properties of olfactory neurons differ with social status. Dominant males had a high percentage of neurons that responded to several odor types, suggesting broad tuning or differential sensitivity when males are reproductively active and defending a territory. A …

Elevated Levels Of Type 2 Respiratory Innate Lymphoid Cells In Human Infants With Severe Respiratory Syncytial Virus Bronchiolitis, Luan D. Vu, David Siefker, Tamekia L. Jones, Dahui You, Ryleigh Taylor, John Devincenzo, Stephania A. Cormier

Faculty Publications

© 2019 by the American Thoracic Society. Rationale: Studies of the immune responses at the site of respiratory syncytial virus (RSV) infection are sparse despite nearly five decades of research into understanding RSV disease. Objectives: To investigate the role of mucosal innate immune responses to RSV and respiratory viral load in infants hospitalized with the natural disease. Methods: Cytokines, viral load, and type 2 innate lymphoid cell (ILC2) levels in nasal aspirates, collected within 24 hours of enrollment, from infants hospitalized with RSV infection were quantified. Measurements and Main Results: RSV severity in infants was categorized based on admission to …

Warnings Of An “Insect Apocalypse” Are Premature, Timothy D. Schowalter, Michael R. Willig, Stephen J. Presley, Manoj Pandey

Faculty Publications

No abstract provided.

A Review Of Interactions Between Insect Biological Control Agents And Semiochemicals, Anamika Sharma, Ramandeep Kaur Sandhi, Gadi V.P. Reddy

Faculty Publications

Biological control agents and semiochemicals have become essential parts of the integrated pest management of insect pests over recent years, as the incorporation of semiochemicals with natural enemies and entomopathogenic microbials has gained significance. The potential of insect pheromones to attract natural enemies has mainly been established under laboratory conditions, while semiochemicals from plants have been used to attract and retain natural enemies in field conditions using strategies such as trap crops and the push–pull mechanism. The best-known semiochemicals are those used for parasitoids–insect pest–plant host systems. Semiochemicals can also aid in the successful dispersal of entomopathogenic microbials. The use …

Early Animal Evolution And Highly Oxygenated Seafloor Niches Hosted By Microbial Mats, Weiming Ding, Lin Dong, Yuanlin Sun, Haoran Ma, Yihe Xu, Runyu Yang, Yongbo Peng, Chuanming Zhou, Bing Shen

Faculty Publications

© 2019, The Author(s). The earliest unambiguous evidence for animals is represented by various trace fossils in the latest Ediacaran Period (550–541 Ma), suggesting that the earliest animals lived on or even penetrated into the seafloor. Yet, the O2 fugacity at the sediment-water interface (SWI) for the earliest animal proliferation is poorly defined. The preferential colonization of seafloor as a first step in animal evolution is also unusual. In order to understand the environmental background, we employed a new proxy, carbonate associated ferrous iron (Fecarb), to quantify the seafloor oxygenation. Fecarb of the latest Ediacaran Shibantan limestone in South China, …

Adjective Learning In Young Typically Developing Children And Children With Developmental Language Disorder: A Retrieval-Based Approach, Laurence B. Leonard, Patricia Deevy, Jeffrey D. Karpicke, Sharon Christ, Christine Weber, Justin B. Kueser, Eileen Haebig

Faculty Publications

Purpose: There are strong retention benefits when learners frequently test themselves during the learning period. This practice of repeated retrieval has recently been applied successfully to children’s word learning. In this study, we apply a repeated retrieval procedure to the learning of novel adjectives by preschool-age children with developmental language disorder (DLD) and their typically developing (TD) peers. We ask whether the benefits of retrieval extend to children’s ability to apply the novel adjectives to newly introduced objects sharing the same characteristics as the objects used during the learning period. Method: Fourteen children with DLD (Mage = 62.64 months) and …

Spatiotemporal Variability Of Fire Characteristics Affect Animal Responses In Pyric Landscapes, Bradley S. Cohen, Thomas J. Prebyl, Bret A. Collier, Michael J. Chamberlain

Faculty Publications

Background: Behavioral responses are the most immediate ways animals interact with their environment, and are primary mechanisms by which individuals mitigate mortality risk while ensuring reproductive success. In disturbance-driven landscapes, animals must adjust behaviors both spatially and temporally to maximize individual fitness. Prescribed fire is an important ecosystem driver in many coniferous forests, as fire cycles nutrients, creates spatially heterogeneous distributions in quantity and quality of forage and cover, and provides opportunities for fire-adapted taxa. Because fire immediately shifts resource distribution, and fire characteristics may drive behavioral responses to recent burns, we examined behavioral responses of 105 Global Positioning System …

Effect Of Two Digestive Enzymes And Ph On The Dsrna Of Endornaviruses Of Bell Pepper And Melon Under In Vitro Conditions, Adair Mccanless, Allison Hultgren, Cesar Escalante, Alyssa Ardt, Rodrigo A. Valverde

Faculty Publications

Purpose: The objective of this investigation was to determine the in vitro effect of two common digestive enzymes, amylase and pepsin, and pH on the integrity of the RI dsRNA of bell pepper endornavirus (BPEV) and Cucumis melo endornavirus (CmEV) evaluated by gel electrophoresis and reverse-transcription PCR (RT-PCR). Methods: We conducted experiments on the in vitro effect of two common digestive enzymes, amylase and pepsin, and pH on the structural integrity of the replicative intermediate (RI) dsRNA of bell pepper endornavirus (BPEV) and Cucumis melo endornavirus (CmEV), evaluated by gel electrophoresis and reverse-transcription polymerase chain reaction. Result: The effect of …

Survival And Inactivation Of Salmonella Enterica Serovar Typhimurium On Food Contact Surfaces During Log, Stationary And Long-Term Stationary Phases, Dorra Djebbi-Simmons, Wenqing Xu, Marlene Janes, Joan King

Faculty Publications

One of the most important transmission routes of foodborne pathogens is through contaminated food contact surfaces. In this study, we investigated the survival and inactivation of Salmonella enterica serovar Typhimurium on frequently used food contact surfaces in household settings, including plastic cutting board (CB), formica laminate (LA), and stainless steel (SS) surfaces. S. Typhimurium at log (6 h), stationary (24 h), or long-term stationary (LTS) (14 days) phases were evaluated. Results showed that, at medium and high microbial loads, LTS phase cells had significantly higher survivor population compared to log and stationary phase cells at 24 h after inoculation (p < 0.05). Disinfection study showed that LTS phase cells were very resilient to sodium hypochlorite when the initial microbial load was high with disinfection efficacy ranging from 26 to 35%. Scanning electron microscopy of these surfaces at 24 h after inoculation with a high microbial load revealed an early biofilm structure.

Evaluation Of Detached Strawberry Leaves For Anthracnose Disease Severity Using Image Analysis And Visual Ratings, Melinda A. Miller-Butler, Barbara J. Smith, Kenneth J. Curry, Eugene K. Blythe

Faculty Publications

Inoculation of detached strawberry leaves with Colletotrichum species may provide an accurate, rapid, nondestructive method of identifying anthracnose-resistant germplasm. The purpose of this study was to statistically compare two methods (visual and image analysis) of evaluating disease severity of strawberry germplasm screened for anthracnose resistance. Detached leaves of 77 susceptible and resistant strawberry clones were inoculated with one Colletotrichum gloeosporioides (Penz.) Penz. & Sacc. and two C. fragariae A. N. Brooks isolates. Anthracnose disease symptoms on each leaf were assessed quantitatively via computer-based image analysis to determine percentage lesion area and qualitatively by two independent raters using a visual disease …

Distinguishing Anuran Species By High-Resolution Melting Analysis Fo The Coi Barcode (Coi-Hrm), Steven Everman, Shiao Y. Wang

Faculty Publications

Taxonomic identification can be difficult when two or more species appear morphologically similar. DNA barcoding based on the sequence of the mitochondrial cytochrome c oxidase 1 gene (COI) is now widely used in identifying animal species. High‐resolution melting analysis (HRM) provides an alternative method for detecting sequence variations among amplicons without having to perform DNA sequencing. The purpose of this study was to determine whether HRM of the COI barcode can be used to distinguish animal species. Using anurans as a model, we found distinct COI melting profiles among three congeners of both Lithobates spp. and Hyla spp. Sequence variations …

Pay Now, Play Later?: Youth And Adolescent Collision Sports, Vivian E. Hamilton

Faculty Publications

The routine and repeated head impacts experienced by athletes in a range of sports can inflict microscopic brain injuries that accumulate over time, even in the absence of concussion. Indeed, cumulative exposure to head impacts—not number of concussions—is the strongest predictor of sports-related degenerative brain disease in later life. The observable symptoms of disease appear years or decades after initial injury and resemble those of other mental-health conditions such as depression and dementia. The years-long interval between earlier, seemingly minor, head impacts and later brain disease has long obscured the connection between the two.

Risk of injury differs across demographics, …

Testing An Active Intervention To Deter Researchers' Use Of Questionable Research Practices, Samuel V. Bruton, M. Brown, Donald Sacco, R. Didlake

Faculty Publications

Introduction: In this study, we tested a simple, active “ethical consistency” intervention aimed at reducing researchers’ endorsement of questionable research practices (QRPs).

Methods: We developed a simple, active ethical consistency intervention and tested it against a control using an established QRP survey instrument. Before responding to a survey that asked about attitudes towards each of fifteen QRPs, participants were randomly assigned to either a consistency or control 3–5-min writing task. A total of 201 participants completed the survey: 121 participants were recruited from a database of currently funded NSF/NIH scientists, and 80 participants were recruited from a pool …

Alu Insertion Polymorphisms Shared By Papio Baboons And Theropithecus Gelada Reveal An Intertwined Common Ancestry, Jerilyn A. Walker, Vallmer E. Jordan, Jessica M. Storer, Cody J. Steely, Paulina Gonzalez-Quiroga, Thomas O. Beckstrom, Lydia C. Rewerts, Corey P. St. Romain, Catherine E. Rockwell, Jeffrey Rogers, Clifford J. Jolly, Miriam K. Konkel, Mark A. Batzer, R. Alan Harris, Muthuswamy Raveendran, Yue Liu, Shwetha Murali, Tauras P. Vilgalys, Gregg W.C. Thomas, Kymberleigh A. Pagel, Vikas Pejaver, Claudia R. Catacchio, Nicoletta Archidiacono, Mario Ventura, Alessia Marra-Campanale, Antonio Palazzo, Oronzo Capozzi, Archana Raja, John Huddleston, Veronica Searles Quick, Anis Karimpour-Fard, Dominik Schrempf, Marc De Manuel Montero, Konstantinos Billis

Faculty Publications

© 2019 The Author(s). Background: Baboons (genus Papio) and geladas (Theropithecus gelada) are now generally recognized as close phylogenetic relatives, though morphologically quite distinct and generally classified in separate genera. Primate specific Alu retrotransposons are well-established genomic markers for the study of phylogenetic and population genetic relationships. We previously reported a computational reconstruction of Papio phylogeny using large-scale whole genome sequence (WGS) analysis of Alu insertion polymorphisms. Recently, high coverage WGS was generated for Theropithecus gelada. The objective of this study was to apply the high-Throughput "poly-Detect" method to computationally determine the number of Alu insertion polymorphisms shared by T. …

@Houstonpolice: An Exploratory Case Of Twitter During Hurricane Harvey, Seungwon Yang, Brenton Stewart

Faculty Publications

Abstract

Purpose

The purpose of this paper is to examine the Houston Police Department (HPD)’s public engagement efforts using Twitter during Hurricane Harvey, which was a large-scale urban crisis event.

Design/methodology/approach

This study harvested a corpus of over 13,000 tweets using Twitter’s streaming API, across three phases of the Hurricane Harvey event: preparedness, response and recovery. Both text and social network analysis (SNA) techniques were employed including word clouds, n-gram analysis and eigenvector centrality to analyze data.

Findings

Findings indicate that departmental tweets coalesced around topics of protocol, reassurance and community resilience. Twitter accounts of governmental agencies, such as …

The Future Of Reef Ecosystems In The Gulf Of Mexico: Insights From Coupled Climate Model Simulations And Ancient Hot-House Reefs, Kristine L. Delong

Faculty Publications

emperatures (SST), salinity, carbonate chemistry, and acidity. Over the last half-century, some reef communities have been disappearing at an alarming pace. This study focuses on the Gulf of Mexico, where the majority of shallow coral reefs are reported to be in poor or fair condition. We analyze the RCP8.5 ensemble of the Community Earth System Model v1.2 to identify monthly-to-decadal trends in Gulf of Mexico SST. Secondly, we examine projected changes in ocean pH, carbonate saturation state, and salinity in the same coupled model simulations. We find that the joint impacts of predicted higher temperatures and changes in ocean acidification …

Simultaneous Enhancement Of Near-Infrared Emission And Dye Photodegradation In A Racemic Aspartic Acid Compound Via Metal-Ion Modification, Frank R. Fronczek, Jian Xu

Faculty Publications

Changing functionalities of materials using simple methods is an active area of research, as it is "green" and lowers the developing cost of new products for the enterprises. A new small molecule racemic N,N-dimethyl aspartic acid has been prepared. Its structure is determined by single-crystal X-ray diffraction. It is characterized by FTIR, XPS, 1 H NMR, and mass spectroscopy. Its near-infrared luminescence can be enhanced by the combination of metal ions, including Dy3+, Gd3+, Nd3+, Er3+, Sr3+, Y3+, Zn2+, Zr4+, Ho3+, Yb3+, La3+, Pr6+/Pr3+, and Sm3+ ions. An optical chemistry mechanism upon interaction between the sensitizer and activator is proposed. …

The Impact Of Msaabcr On Sara-Associated Phenotypes Is Different In Divergent Clinical Isolates Of Staphylococcus Aureus, Joseph S. Rom, Aura M. Ramirez, Karen E. Beenken, Gyan S. Sahukhal, Mohamed O. Elasri, Mark S. Smeltzer

Faculty Publications

The staphylococcal accessory regulator (sarA) plays an important role in Staphylococcus aureus infections including osteomyelitis, and the msaABCR operon has been implicated as an important factor in modulating expression of sarA. Thus, we investigated the contribution of msaABCR to sarA-associated phenotypes in the S. aureus clinical isolates LAC and UAMS-1. Mutation of msaABCR resulted in reduced production of SarA and a reduced capacity to form a biofilm in both strains. Biofilm formation was enhanced in a LAC msa mutant by restoring the production of SarA, but this was not true in a UAMS-1 msa mutant. Similarly, …

Evolution Of A Relativistic Electron Beam For Tracing Magnetospheric Field Lines, Andrew T. Powis, Peter Porazik, Michael Greklek-Mckeon, Kailas Amin, David Shaw, Igor D. Kaganovich, Jay R. Johnson, Ennio Sanchez

Faculty Publications

Tracing magnetic field-lines of the Earth's magnetosphere using beams of relativistic electrons will open up new insights into space weather and magnetospheric physics. Analytic models and a single-particle-motion code were used to explore the dynamics of an electron beam emitted from an orbiting satellite and propagating until impact with the Earth. The impact location of the beam on the upper atmosphere is strongly influenced by magnetospheric conditions, shifting up to several degrees in latitude between different phases of a simulated storm. The beam density cross-section evolves due to cyclotron motion of the beam centroid and oscillations of the beam envelope. …

Testing Predictability Of Disease Outbreaks With A Simple Model Of Pathogen Biogeography, Tad Dallas, Colin J. Carlson, Timothée Poisot

Faculty Publications

Predicting disease emergence and outbreak events is a critical task for public health professionals and epidemiologists. Advances in global disease surveillance are increasingly generating datasets that are worth more than their component parts for prediction-oriented work. Here, we use a trait-free approach which leverages information on the global community of human infectious diseases to predict the biogeography of pathogens through time. Our approach takes pairwise dissimilarities between countries’ pathogen communities and pathogens’ geographical distributions and uses these to predict country–pathogen associations. We compare the success rates of our model for predicting pathogen outbreak, emergence and re-emergence potential as a function …

Characterisation Of Ashes From Waste Biomass Power Plants And Phosphorus Recovery, Lijian Leng, Anna A. Bogush, Amitava Roy, Julia A. Stegemann

Faculty Publications

Biowastes, such as meat and bone meal (MBM), and poultry litter (PL), are used as energy sources for industrial combustion in the UK. However, the biomass ashes remaining after combustion, which contain nutrients such as phosphorus, are landfilled rather than utilised. To promote their utilisation, biomass ashes from industries were characterised in terms of their elemental and mineral compositions, phosphorus extractability, and pH-dependent leachability. These ashes were highly alkaline (pH as high as 13), and rich in calcium and phosphorus. The P bio-availabilities in the ash evaluated by Olsen's extraction were low. Hydroxyapatite and potassium sodium calcium phosphate were identified …

Characterisation Of Ashes From Waste Biomass Power Plants And Phosphorus Recovery, Lijian Leng, Anna A. Bogush, Amitava Roy, Julia A. Stegemann

Faculty Publications

Biowastes, such as meat and bone meal (MBM), and poultry litter (PL), are used as energy sources for industrial combustion in the UK. However, the biomass ashes remaining after combustion, which contain nutrients such as phosphorus, are landfilled rather than utilised. To promote their utilisation, biomass ashes from industries were characterised in terms of their elemental and mineral compositions, phosphorus extractability, and pH-dependent leachability. These ashes were highly alkaline (pH as high as 13), and rich in calcium and phosphorus. The P bio-availabilities in the ash evaluated by Olsen's extraction were low. Hydroxyapatite and potassium sodium calcium phosphate were identified …

Systemic Toxicity Reported For Cdk8/19 Inhibitors Cct251921 And Msc2530818 Is Not Due To Target Inhibition, Mengqian Chen, Jing Li, Jiaxin Liang, Zanshé S. Thompson, Katie Kathrein, Eugenia Broude, Igor Roninson

Faculty Publications

CDK8/19 kinases, which mediate transcriptional reprogramming, have become an active target for cancer drug discovery. Several small-molecule CDK8/19 inhibitors showed in vivo efficacy and two have entered clinical trials, with no significant toxicities reported. However, Clarke et al. (eLife 2016; 5; e20722) found severe systemic toxicity associated with two potent CDK8/19 inhibitors, Cmpd3 (CCT251921) and Cmpd4 (MSC2530818), and suggested that their toxicity was due to on-target effects. Here, we compared five CDK8/19 inhibitors: Cmpd3, Cmpd4, Senexin B, 16-didehydro-cortistatin A (dCA) and 15w, in different assays. Only Cmpd4 showed striking toxicity in developing zebrafish. In cell-based assays for CDK8 and CDK19 …

A Deda Family Membrane Protein Is Required For Burkholderia Thailandensis Colistin Resistance, Pradip R. Panta, Sujeet Kumar, Caroline F. Stafford, Caitlin E. Billiot, Martin V. Douglass, Carmen M. Herrera, M. Stephen Trent, William T. Doerrler

Faculty Publications

© Copyright © 2019 Panta, Kumar, Stafford, Billiot, Douglass, Herrera, Trent and Doerrler. Colistin is a “last resort” antibiotic for treatment of infections caused by some multidrug resistant Gram-negative bacterial pathogens. Resistance to colistin varies between bacterial species. Some Gram-negative bacteria such as Burkholderia spp. are intrinsically resistant to very high levels of colistin with minimal inhibitory concentrations (MIC) often above 0.5 mg/ml. We have previously shown DedA family proteins YqjA and YghB are conserved membrane transporters required for alkaline tolerance and resistance to several classes of dyes and antibiotics in Escherichia coli. Here, we show that a DedA family …

Gulf Of Mexico Hypoxia: Past, Present, And Future, Nancy N. Rabalais, R. Eugene Turner

Faculty Publications

One of the largest human-caused areas of bottom-water oxygen deficiency in the coastal ocean is on the northern Gulf of Mexico continental shelf adjacent to the Mississippi River, which discharges nitrogen and phosphorus loads into its surface waters. The beginnings of seasonal hypoxia (≤2 mg l−1 dissolved oxygen) in this area was in the 1950s with an acceleration in the worsening of severity during the 1970s. Currently, the bottom area of hypoxic areas can approach 23,000 km2, and the volume, 140 km3. Ecosystems, people, and economies are now at risk within the Mississippi River watershed and in the northern Gulf …