Digital Commons Network^™

Bird Strikes And Aircraft Fuselage Color: A Correlational Study, Esteban Fernández-Juricic, Jim Gaffney, Bradley F. Blackwell, Patrice Baumhardt

Human–Wildlife Interactions

Collisions between birds and aircraft (bird strikes) pose safety risks to the public, cost airports and airlines money, and result in liability issues. Recent research suggests that aircraft visibility could be enhanced to increase detection and avoidance by birds. We questioned whether aircraft color scheme might play a role in bird-strike frequency. We used public records of bird strikes along with information on flights that were gathered by federal agencies in the United States. We estimated the bird-strike rates and compared them among airline companies using different fuselage color schemes, while controlling for aircraft type. Using an avian vision modeling …

Increasing Trend Of Damaging Bird Strikes With Aircraft Outside The Airport Boundary: Implications For Mitigation Measures, Richard A. Dolbeer

Human–Wildlife Interactions

A basic tenet of programs to mitigate the risks of bird strikes with aircraft has been to focus management efforts at airports because various historical analyses of bird-strike data for civil aviation have indicated the majority of strikes occur in this environment during take-off and landing at (AGL). However, a trend analysis of birdstrike data involving commercial air carriers from the U.S. National Wildlife Strike Database for Civil Aviation, 1990 to 2009, indicates that this tenet should be revised. The percentage of all strikes that occurred at >500 feet AGL increased significantly from about 25% in 1990 to 30% in …

Using Radar Cross-Section To Enhance Situational Awareness Tools For Airport Avian Radars, Tim J. Nohara, Robert C. Beason, Peter Weber

Human–Wildlife Interactions

Digital avian radars can track bird movements continuously in the vicinity of airports without interruption. The result is a wealth of bird-track data that can be used in mitigation efforts to reduce bird strikes on and near airfields. To make the sheer volume of bird track data generated by digital avian radars accessible to users, we developed tools to transform these data into analytical and visualization products to improve situational awareness for wildlife and airfield personnel. In addition to the parameters traditionally associated with radar tracking (latitude, longitude, altitude, speed, and heading), we have implemented a procedure to estimate the …

Predator Cues Reduce American Beaver Use Of Foraging Trails, William J. Severud, Jerrold L. Belant, John G. Bruggink, Steve K. Windels

Human–Wildlife Interactions

Herbivores must balance energy needs with avoiding risks, using various cues to assess predation risk. The American beaver (Castor canadensis) is a semi-aquatic herbivore vulnerable to predation on land by wolves (Canis lupis). We tested the use of wolf urine as a potential tool to reduce human–beaver conflicts. We used infrared cameras to monitor use of terrestrial foraging trails by beavers during food cache construction in Seney National Wildlife Refuge, Michigan, from September to November 2008. Two foraging trails at 15 colonies (30 total trails) were monitored for 1 week to establish baseline use. One trail …

Cost-Benefit Analysis Of Managed Shotgun Hunts For Suburban White-Tailed Deer, Ryan D. Hubbard, Clayton K. Nielsen

Human–Wildlife Interactions

Deer managers often utilize managed hunts to curtail burgeoning white-tailed deer (Odocoileus virginianus) populations in suburban areas. Although several studies have used population modeling to focus management, these efforts generally provide only harvest numbers, without considering the spatial placement of hunters on the landscape. Further, few studies have modeled management effort as deer density changes during the hunt. We modeled 2 types of managed shotgun hunts, a replacement hunt, where the stand of each successful hunter would be filled the following day, thus, ensuring the same number of hunters would be present each day of the hunt, and …

Preference Of White-Tailed Deer For Corn Hybrids And Agricultural Husbandry Practices During The Growing Season, Joshua A. Delger, Kevin L. Monteith, Lowell E. Schmitz, Jonathan A. Jenks

Human–Wildlife Interactions

Damage to field corn (Zea mays) by white-tailed deer (Odocoileus virginianus) can be substantial, resulting in millions of dollars lost annually. Numerous methods exist to minimize deer depredation, but all have met with varying degrees of success. Currently, little information is available on preference of white-tailed deer for corn hybrids during the growing season and how that preference might affect depredation patterns. We used adult female white-tailed deer in captivity to study the effect of herbicide treatments on deer-use (treatment versus no treatment) of corn in 2005 and to document preference among specific corn hybrids in …

Feed Depredation By European Starlings In A Kansas Feedlot, Brandon E. Depenbusch, James S. Drouillard, Charles D. Lee

Human–Wildlife Interactions

Confinement cattle-feeding operations have been associated with large populations of starlings (Sturnus vulgaris) during the winter months. Starlings can eat nearly 1 kg each of feed per month (Besser et al. 1968). In the first of our 2 studies, we evaluated feed selection and feed depredation by starlings using 5 concentrate-based cattle finishing diets. Four diets evaluated were in traditional meal-type form, and 1 diet was an extruded pellet. We placed rations into a section of the feed trough that we made accessible to starlings but not to cattle. Of the original 13.6 kg of steam-flaked corn and …

Livestock And Domestic Dog Predations By Wolves In Michigan, Justin L. Edge, Dean E. Beyer Jr., Jerrold L. Belant, Mark J. Jordan, Brian J. Roell

Human–Wildlife Interactions

Wolves (Canis spp.) have recolonized the Great Lakes region and expanded into agricultural areas where there is increasing concern of conflict with livestock. We documented 121 wolf predation events on captive or domestic animals in the Upper Peninsula (UP) of Michigan between April 1996 and April 2009. We investigated the relationship between annual wolf abundance and predation events, seasonality of predations on livestock, and the association between previous winter severity and predations on livestock. The annual number of predations on livestock increased with wolf abundance, and overall, predations on cattle and calves increased during calving season. We observed a …

Too Many Hogs? A Review Of Methods To Mitigate Impact By Wild Boar And Feral Hogs, Giovanna Massei, Sugoto Roy, Richard Bunting

Human–Wildlife Interactions

Feral hogs (Sus scrofa) are among the most widely-distributed mammals in the world and have the highest reproductive output compared with other ungulates. Worldwide, feral hogs are increasing in range and numbers. Human–feral hog conflicts include impact on abundance and richness of plant and animal species, crop damage, predation on livestock, vehicle collisions, and disease transmission. We reviewed methods employed to mitigate the impact of feral hogs on human activities and discussed these methods in terms of effectiveness, feasibility, costs, and social acceptance. Traditional methods of control include trapping, angering, shooting, poisoning, and Judas hogs. Nonlethal methods of …

Good Fences Make Good Neighbors: Implementation Of Electric Fencing For Establishing Effective Livestock-Protection Dogs, Thomas M. Gehring, Kurt C. Vercauteren, Anna C. Cellar

Human–Wildlife Interactions

To be effective, livestock protection dogs (LPDs) must be carefully integrated with the livestock they will be protecting. Others have developed guidelines to assist producers in this training and assimilation process. In many areas fencing is necessary; however, guidelines for containing LPDs and their livestock behind electric fencing are lacking. We present results from larger projects involving LPDs where we encountered issues with fencing and preventing LPDs from roaming from their owner’s property. We found that ranging and escaping from pastures was exhibited by LPDs that were not properly introduced and trained to electric fencing at an early age. LPDs …

Public Perceptions Of Bears And Management Interventions In Japan, Ryo Sakurai, Susan K. Jacobson

Human–Wildlife Interactions

Conservation of bears is a challenge globally. In Japan, Asiatic black bears (Ursus thibetanus) and brown bears (Ursus arctos) are considered a nuisance because of agricultural and property damage and personal human danger due to occasional human casualties. Reduction of human–bear conflicts in Japan would improve long-term conservation of bears and reduce risks to human health and safety. To understand Japanese perceptions of and experience with bears, we analyzed results of 5 public surveys and reviewed 29 articles from the research and gray literature in Japan. We compared recommendations for interventions to reduce human–bear conflicts with …

Factors Governing Risk Of Cougar Attacks On Humans, David Mattson, Kenneth Logan, Linda Sweanor

Human–Wildlife Interactions

Since the 1980s wildlife managers in the United States and Canada have expressed increasing concern about the physical threat posed by cougars (Puma concolor) to humans. We developed a conceptual framework and analyzed 386 human– cougar encounters (29 fatal attacks, 171 instances of nonfatal contact, and 186 close-threatening encounters) to provide information relevant to public safety. We conceived of human injury and death as the outcome of 4 transitions affected by different suites of factors: (1) a human encountering a cougar: (2) given an encounter, odds that the cougar would be aggressive; (3) given aggression, odds that the …

Soap Box The Wildlife Society Responds To Cnn Report On Feral Horses, Laura Bies, Michael Hutchins, Thomas J. Ryder

Human–Wildlife Interactions

No abstract provided.

Estimation Of Dariy Particulate Matter Emission Rates By Lidar And Inverse Modeling, C. C. Marchant, Kori D. Moore, Michael D. Wojcik, Randy S. Martin, R L. Pfeiffer, K H. Prueger, J L. Hatfield

Civil and Environmental Engineering Faculty Publications

Particulate matter (PM) emissions from agricultural operations are an important issue for air quality and human health and a topic of interest to government regulators. PM emission rates from a dairy in the San Joaquin Valley of California were investigated during June 2008. The facility had 1,885 total animals, including 950 milking cows housed in free-stall pens with an open-lot exercise area, and 935 dry cows, steers, bulls, and heifers housed in open lots. Point sensors, including filter-based aerodynamic mass samplers and optical particle counters (OPC), were deployed at select points around the facility to measure optical and aerodynamic particulate …

Genetic Diversity In Proteolytic Enzymes And Amino Acid Metabolism Among Lactobacillushelveticus Strains, Jeff Broadbent, H. Cai, R. L. Larsen, J. E. Hughes, D. L. Welker, V. G. De Carvalho, T. A. Tompkins, Y. Ardo, F. Vogensen, A. Delorentiis, M. Gatti, E. Neviani, J. L. Steele

Nutrition, Dietetics, and Food Sciences Faculty Publications

Lactobacillus helveticus CNRZ 32 is recognized for its ability to decrease bitterness and accelerate flavor development in cheese, and has also been shown to release bioactive peptides in milk. Similar capabilities have been documented in other strains of Lb. helveticus, but the ability of different strains to affect these characteristics can vary widely. Because these attributes are associated with enzymes involved in proteolysis or AA catabolism, we performed comparative genome hybridizations to a CNRZ 32 microarray to explore the distribution of genes encoding such enzymes across a bank of 38 Lb. helveticus strains, including 2 archival samples of CNRZ 32. …

Dissimilatory Nitrate Reductionpathways In An Oligotrophic Aquatic Ecosystem: Spatial And Temporal Trends, I. J. Washbourne, C. L. Crenshaw, Michelle A. Baker

Biology Faculty Publications

Elevated nitrate (NO₃⁻) concentrations can cause eutrophication, which may lead to harmful algal blooms, loss of habitat and reduction in biodiversity. Denitrification, a dissimilatory process that removes NO₃⁻ mainly as dinitrogen gas (N₂), is believed to be the dominant NO₃⁻ removal pathway in aquatic ecosystems. Evidence suggests that a less well-studied process, dissimilatory nitrate reduction to ammonium (DNRA), which retains nitrogen (N) in the system, may also be important under favorable conditions. Using stable isotope tracers in sealed microcosms, we measured the potential for NO₃⁻ losses due to DNRA …

On The Use Of Log-Transformation Vs. Nonlinear Regression For Analyzing Biological Power-Laws, Xiao Xiao, Ethan P. White, M. B. Hooten, Susan L. Durham

Biology Faculty Publications

Power-law relationships are among the most well-studied functional relationships in biology. Recently the common practice of fitting power-laws using linear regression on log-transformed data (LR) has been criticized, calling into question the conclusions of hundreds of studies. It has been suggested that nonlinear regression (NLR) is preferable, but no rigorous comparison of these two methods has been conducted. Using Monte Carlo simulations we demonstrate that the error distribution determines which method performs better, with LR better characterizing data with multiplicative lognormal error and NLR better characterizing data with additive, homoscedastic, normal error. Analysis of 471 biological power-laws shows that both …

Simple Structural Differences Between Coding And Noncodingdna, Kenneth J. Locey, Ethan P. White

Biology Faculty Publications

Background

The study of large-scale genome structure has revealed patterns suggesting the influence of evolutionary constraints on genome evolution. However, the results of these studies can be difficult to interpret due to the conceptual complexity of the analyses. This makes it difficult to understand how observed statistical patterns relate to the physical distribution of genomic elements. We use a simpler and more intuitive approach to evaluate patterns of genome structure.

Methodology/Principal Findings

We used randomization tests based on Morisita's Index of aggregation to examine average differences in the distribution of purines and pyrimidines among coding and noncoding regions of 261 …

Species Compositionand Abundance Of Mammalian Communities, K. M. Thibault, S. R. Supp, M. Griffin, Ethan P. White, S.K. Morgan Ernest

Biology Faculty Publications

Ecologists have long sought to understand the mechanisms underlying the assembly and structure of communities. Such understanding is relevant to both basic science and conservation-related issues. The macroecological approach to this problem involves asking scientific questions using a large number of communities in order to elucidate generalities in pattern and process. Such analyses are typically conducted using a substantial amount of data from a particular taxonomic group across a diversity of systems. Large community databases are available for a number of taxa, but no publicly available database exists for mammals. Given the logistical challenges of collecting such data de novo, …

On The Use Of Log-Transformation Vs. Nonlinear Regression For Analyzing Biological Power-Laws, Xiao Xiao

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Power-law relationships are among the most well-studied functional relationships in biology . Recently the common practice of fitting power-laws using linear regression on log-transformed data (LR) has been criticized, calling into question the conclusions of hundreds of studies. It has been suggested that nonlinear regression (NLR) is preferable, but no rigorous comparison of these two methods has been conducted. Using Monte Carlo simulations we demonstrate that the error distribution determines which method performs better, with LR better characterizing data with multiplicative lognormal error and NLR better characterizing data with additive normal error. Analysis of 471 biological power-laws shows that both …

Relative Changes In Krillabundance Inferred From Antarctic Fur Seal, T. Huang, L. Sun, John M. Stark, Y. Wang, Z. Cheng, Q. Yang, S. Sun

Biology Faculty Publications

Antarctic krill Euphausia superba is a predominant species in the Southern Ocean, it is very sensitive to climate change, and it supports large stocks of fishes, seabirds, seals and whales in Antarctic marine ecosystems. Modern krill stocks have been estimated directly by net hauls and acoustic surveys; the historical krill density especially the long-term one in the Southern Ocean, however, is unknown. Here we inferred the relative krill population changes along the West Antarctic Peninsula (WAP) over the 20th century from the trophic level change of Antarctic fur seal Arctocephalus gazella using stable carbon (d13C) and nitrogen (d15N) isotopes of …

The Selaginella Genome Identifies Changes In Gene Content Associated With The Evolution Of Vascular Plants, J. A. Banks, T. Nishiyama, M. Hasebe, J. L. Bowman, M. Gribskov, C. Depamphilis, Paul G. Wolf

Biology Faculty Publications

Vascular plants appeared ~410 million years ago, then diverged into several lineages of which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes. We report here the genome sequence of the lycophyte Selaginella moellendorffii (Selaginella), the first nonseed vascular plant genome reported. By comparing gene content in evolutionarily diverse taxa, we found that the transition from a gametophyte- to a sporophyte-dominated life cycle required far fewer new genes than the transition from a nonseed vascular to a flowering plant, whereas secondary metabolic genes expanded extensively and in parallel in the lycophyte and angiosperm lineages. Selaginella differs in …

De Novo Characterization Of The Gametophyte Transcriptome In Bracken Fern, Pteridium Aquilinum, J. P. Der, M. S. Barker, N. J. Wickett, C. W. Depamphilis, Paul G. Wolf

Biology Faculty Publications

Because of their phylogenetic position and unique characteristics of their biology and life cycle, ferns represent an important lineage for studying the evolution of land plants. Large and complex genomes in ferns combined with the absence of economically important species have been a barrier to the development of genomic resources. However, high throughput sequencing technologies are now being widely applied to non-model species. We leveraged the Roche 454 GS-FLX Titanium pyrosequencing platform in sequencing the gametophyte transcriptome of bracken fern (Pteridium aquilinum) to develop genomic resources for evolutionary studies.

The Evolution Of Chloroplast Genes And Genomes In Ferns, Paul G. Wolf, J. P. Der, A. M. Duffy, J. B. Davidson, A. L. Grusz, K. M. Pryer

Biology Faculty Publications

Most of the publicly available data on chloroplast (plastid) genes and genomes come from seed plants, with relatively little information from their sister group, the ferns. Here we describe several broad evolutionary patterns and processes in fern plastid genomes (plastomes), and we include some new plastome sequence data. We review what we know about the evolutionary history of plastome structure across the fern phylogeny and we compare plastome organization and patterns of evolution in ferns to those in seed plants. A large clade of ferns is characterized by a plastome that has been reorganized with respect to the ancestral gene …

Linkages To Public Land Framework: Toward Embedding Humans In Ecosystem Analyses By Using “Inside-Out Social Assessment", Joanna Endter-Wada, D. J. Blahna

Environment and Society Faculty Publications

This article presents the ‘‘Linkages to Public Land’’ (LPL) Framework, a general but comprehensive data-gathering and analysis approach aimed at informing citizen and agency decision making about the social environment of public land. This social assessment and planning approach identifies and categorizes various types of linkages that people have to public land and guides the tasks of finding and using information on people in those linkages. Linkages are defined as the ‘‘coupling mechanisms’’ that explain how and why humans interact with ecosystems, while linkage analyses are empirical investigations contextualized both temporally and geographically. The conceptual, legal, and theoretical underpinnings of …

How A Lagoon Works For Livestock Wastewater Treatment, Rhonda Miller, Jennifer Major, Penny Trinca

All Current Publications

This publication discusses various types of lagoons and how they work as livestock wastewater treatment.

Russian Olive Control - Frill Cut Treatment, Ron Patterson

All Current Publications

The Russian olive (Elaeagnus angustifolia L.) is a small, thorny tree that is native to Europe. It tends to create a monoculture, reducing vegetative diversity. The encroachment of Russian olive into pastures, along ditches, and in fence lines, has made it critical for landowners to understand different options to control the spread of the trees.

Factors Affecting Greater Sage-Grouse (Centrocercus Urophasianus) Survival And Movement In South-Central Utah., Terry Messmer

All Current Publications

Greater sage-grouse (Centrocercus urophasianus) adult and juvenile survival have been identified as critical demographic parameters. However, little is known regarding the dynamics of juvenile sage-grouse. From 2008-2010, I used radio-telemetry and 2 transmitter types to monitor 91 juvenile sage-grouse. Program MARK was used to analyze survival data.

Best Management Practices Monitoring Guide For Stream Systems, Nancy Mesner

All Current Publications

Best Management Practices Monitoring Guide for Stream Systems provides guidance on establishing a water quality monitoring program that will demonstrate the effectiveness of Best Management Practices (BMPs) to reduce nonpoint source pollution in stream systems.

Oregon Aspen Project, Forest Restoration Partnership

Aspen Bibliography

The Oregon Aspen Project was initiated in response to the decline of aspen groves in Oregon and throughout the Western United States, and the lack of information to guide managers interested in stewardship to enhance this resource. There were three central goals and accompanying objectives for this project which are listed below. The project accomplishments are provided below each bulleted objective